Mock Version: 1.4.15
Mock Version: 1.4.15
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/lammps.spec'], chrootPath='/var/lib/mock/epel7-build-16475325-1180791/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff9564e128>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target aarch64 --nodeps /builddir/build/SPECS/lammps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
Wrote: /builddir/build/SRPMS/lammps-20190605-3.el7.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/lammps.spec'], chrootPath='/var/lib/mock/epel7-build-16475325-1180791/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff9564e128>timeout=172800uid=1000gid=425user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/SPECS/lammps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False
Building target platforms: aarch64
Building for target aarch64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.r4U85P
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf lammps-stable_5Jun2019
+ /usr/bin/gzip -dc /builddir/build/SOURCES/lammps-stable_5Jun2019.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd lammps-stable_5Jun2019
+ /usr/bin/gzip -dc /builddir/build/SOURCES/lammps-testing-827be7af84ca100d394ea1cf6d3bc49f6a8eef92.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find . -type f '(' -name '*.cpp' -or -name '*.h' ')' -exec sed -e '/#pragma omp/s/default(none)/default(shared)/' -e '/#pragma omp/s/shared([^)]\+)//' -i '{}' +
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.F7pFJV
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ . /etc/profile.d/modules.sh
BUILDSTDERR: ++++ /bin/ps -p 31042 -ocomm=
BUILDSTDERR: +++ /bin/basename sh
BUILDSTDERR: ++ shell=sh
BUILDSTDERR: ++ '[' -f /usr/share/Modules/init/sh ']'
BUILDSTDERR: ++ . /usr/share/Modules/init/sh
BUILDSTDERR: +++ MODULESHOME=/usr/share/Modules
BUILDSTDERR: +++ export MODULESHOME
BUILDSTDERR: +++ '[' '' = '' ']'
BUILDSTDERR: +++ LOADEDMODULES=
BUILDSTDERR: +++ export LOADEDMODULES
BUILDSTDERR: +++ '[' /usr/share/Modules/modulefiles:/etc/modulefiles = '' ']'
+ for mpi in ''\'''\''' mpich openmpi
+ test -n ''
+ mkdir -p serial
+ pushd serial
~/build/BUILD/lammps-stable_5Jun2019/serial ~/build/BUILD/lammps-stable_5Jun2019
+ cp -al ../lammps-testing-827be7af84ca100d394ea1cf6d3bc49f6a8eef92 tests/
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  '
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  '
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
BUILDSTDERR: ++ test -n ''
+ /usr/bin/cmake3 -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake -DBUILD_LIB=ON -DPKG_PYTHON=ON -DPKG_VORONOI=ON -DPKG_USER-ATC=ON -DPKG_USER-H5MD=ON -DPKG_KIM=ON -DENABLE_TESTING=ON -DPYTHON_INSTDIR=/usr/lib/python3.6/site-packages -DCMAKE_INSTALL_SYSCONFDIR=/etc -DPKG_GPU=ON -DGPU_API=OpenCL -DBUILD_OMP=ON -DFFT=FFTW3 -DPKG_USER-INTEL=OFF -DCMAKE_INSTALL_BINDIR=/usr/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64 -DLAMMPS_MACHINE= -DLAMMPS_LIB_SUFFIX= -DCMAKE_INSTALL_MANDIR=/usr/share/man -DLAMMPS_TESTING_SOURCE_DIR=/builddir/build/BUILD/lammps-stable_5Jun2019/serial/tests ../cmake
loading initial cache file ../cmake/presets/all_on.cmake
loading initial cache file ../cmake/presets/nolib.cmake
-- The CXX compiler identification is GNU 4.8.5
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Running check for auto-generated files from make-based build system
-- The C compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Running test discovery...
-- Found 53 tests.
-- Found OpenMP_C: -fopenmp (found version "3.1") 
-- Found OpenMP_CXX: -fopenmp (found version "3.1") 
-- Found OpenMP: TRUE (found version "3.1")  
-- Looking for C++ include omp.h
-- Looking for C++ include omp.h - found
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") 
-- Checking for module 'fftw3'
--   Found fftw3, version 3.3.3
-- Found FFTW3: /usr/lib64/libfftw3.so  
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libopenblas.so  
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found PythonLibs: /usr/lib64/libpython3.6m.so (found version "3.6.8") 
-- Found JPEG: /usr/lib64/libjpeg.so (found version "62") 
-- Found PNG: /usr/lib64/libpng.so (found version "1.5.13") 
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") 
-- Found GZIP: /usr/bin/gzip  
-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) 
-- Found VORO: /usr/lib64/libvoro++.so  
-- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) 
-- Checking for module 'libkim-api>=2.0'
--   Found libkim-api, version 2.0.2
-- Found KIM-API: kim-api  
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.12")  
-- Looking for CL_VERSION_2_2
-- Looking for CL_VERSION_2_2 - found
-- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") 
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/atom_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/beck_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/born_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/born_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/born_coul_long_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/born_coul_wolf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/born_coul_wolf_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/buck_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/buck_coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/buck_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/charmm_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/colloid_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/coul_debye_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/coul_dsf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/coul_long_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/device_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/dipole_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/dipole_lj_sf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/dipole_long_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/dpd_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/eam_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/ellipsoid_nbor_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/gauss_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj96_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_class2_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_coul_debye_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_coul_msm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_cubic_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_dsf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_expand_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_expand_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_gromacs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_sdk_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/lj_sdk_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/mie_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/morse_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/neighbor_cpu_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/neighbor_gpu_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/pppm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/soft_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/sw_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/table_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/ufm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/vashishta_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/yukawa_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/yukawa_colloid_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/zbl_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/gayberne_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/gayberne_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/re_squared_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/re_squared_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/tersoff_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/tersoff_zbl_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu/tersoff_mod_cl.h...
-- Generating style_angle.h...
-- Generating style_atom.h...
-- Generating style_body.h...
-- Generating style_bond.h...
-- Generating style_command.h...
-- Generating style_compute.h...
-- Generating style_dihedral.h...
-- Generating style_dump.h...
-- Generating style_fix.h...
-- Generating style_improper.h...
-- Generating style_integrate.h...
-- Generating style_kspace.h...
-- Generating style_minimize.h...
-- Generating style_nbin.h...
-- Generating style_npair.h...
-- Generating style_nstencil.h...
-- Generating style_ntopo.h...
-- Generating style_pair.h...
-- Generating style_reader.h...
-- Generating style_region.h...
-- Generating packages_angle.h...
-- Generating packages_atom.h...
-- Generating packages_body.h...
-- Generating packages_bond.h...
-- Generating packages_command.h...
-- Generating packages_compute.h...
-- Generating packages_dihedral.h...
-- Generating packages_dump.h...
-- Generating packages_fix.h...
-- Generating packages_improper.h...
-- Generating packages_integrate.h...
-- Generating packages_kspace.h...
-- Generating packages_minimize.h...
-- Generating packages_nbin.h...
-- Generating packages_npair.h...
-- Generating packages_nstencil.h...
-- Generating packages_ntopo.h...
-- Generating packages_pair.h...
-- Generating packages_reader.h...
-- Generating packages_region.h...
-- Generating lmpinstalledpkgs.h...
-- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.8") 
-- Building package: ASPHERE
-- Building package: BODY
-- Building package: CLASS2
-- Building package: COLLOID
-- Building package: CORESHELL
-- Building package: DIPOLE
-- Building package: GRANULAR
-- Building package: KSPACE
-- Building package: MANYBODY
-- Building package: MC
-- Building package: MESSAGE
-- Building package: MISC
-- Building package: MOLECULE
-- Building package: PERI
-- Building package: POEMS
-- Building package: QEQ
-- Building package: REPLICA
-- Building package: RIGID
-- Building package: SHOCK
-- Building package: SPIN
-- Building package: SNAP
-- Building package: SRD
-- Building package: KIM
-- Building package: PYTHON
-- Building package: VORONOI
-- Building package: USER-ATC
-- Building package: USER-BOCS
-- Building package: USER-CGDNA
-- Building package: USER-MESO
-- Building package: USER-CGSDK
-- Building package: USER-COLVARS
-- Building package: USER-DIFFRACTION
-- Building package: USER-DPD
-- Building package: USER-DRUDE
-- Building package: USER-EFF
-- Building package: USER-FEP
-- Building package: USER-H5MD
-- Building package: USER-MANIFOLD
-- Building package: USER-MEAMC
-- Building package: USER-MGPT
-- Building package: USER-MISC
-- Building package: USER-MOFFF
-- Building package: USER-PHONON
-- Building package: USER-PTM
-- Building package: USER-QTB
-- Building package: USER-REAXC
-- Building package: USER-SDPD
-- Building package: USER-SMTBQ
-- Building package: USER-SPH
-- Building package: USER-TALLY
-- Building package: USER-UEF
-- Building package: USER-YAFF
-- Building package: USER-OMP
-- Building package: OPT
-- Building package: GPU
-- The following packages have been found:
 * OpenMP
 * FFTW3
 * LAPACK
 * Threads
 * BLAS
 * PythonLibs
 * JPEG
 * PNG
 * ZLIB
 * VORO
 * PkgConfig
 * KIM-API
 * HDF5
 * OpenCL
 * PythonInterp
-- <<< Build configuration >>>
   Build type       
   Install path     /usr
   Compilers and Flags:
   C++ Compiler     /usr/bin/c++
       Type         GNU
       Version      4.8.5
   C++ Flags        -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp 
   Defines          LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_USER_OMP
-- C Compiler /usr/bin/cc
     Type     GNU
     Version  4.8.5
     C Flags  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp 
-- Linker flags:
   Executable      -Wl,-z,relro
-- Shared libraries  -Wl,-z,relro
-- Link libraries: mpi_stubs;/usr/lib64/libfftw3.so;/usr/lib64/libpython3.6m.so;/usr/lib64/libjpeg.so;/usr/lib64/libpng.so;/usr/lib64/libz.so;/usr/lib64/libvoro++.so;-lkim-api;cslib;m;poems;atc;colvars;h5md;gpu
-- GPU Api: OPENCL
-- OCL Tune: GENERIC
-- GPU Precision: MIXED
-- Using FFTW3 as FFT
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     LIB_SUFFIX
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/lammps-stable_5Jun2019/serial
+ /usr/bin/make -j4
/usr/bin/cmake3 -S/builddir/build/BUILD/lammps-stable_5Jun2019/cmake -B/builddir/build/BUILD/lammps-stable_5Jun2019/serial --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/depend
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/msi2lmp.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/mpi_stubs.dir/DependInfo.cmake --color=
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/poems.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/colvars.dir/DependInfo.cmake --color=
Scanning dependencies of target mpi_stubs
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  0%] Building C object CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c
Scanning dependencies of target msi2lmp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c
Scanning dependencies of target poems
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c
Scanning dependencies of target colvars
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp
[  0%] Linking C static library libmpi_stubs.a
/usr/bin/cmake3 -P CMakeFiles/mpi_stubs.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/mpi_stubs.dir/link.txt --verbose=1
/usr/bin/ar qc libmpi_stubs.a  CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o
/usr/bin/ranlib libmpi_stubs.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  0%] Built target mpi_stubs
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c: In function 'ReadCarFile':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:101:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAX_LINE_LENGTH,CarF); /* Read header line */
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:108:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF); /* Comment line */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:109:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF); /* Date stamp */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:110:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fscanf(CarF,"%*s %lf %lf %lf %lf %lf %lf %*s",
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:124:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH, CarF); /* Comment line */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:125:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH, CarF); /* Date Stamp */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:146:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:180:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:189:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(CarF,"%s %lf %lf %lf %*s %d %s %s %lf",
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:209:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:210:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
[  1%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp
[  1%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c
[  1%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c: In function 'SearchAndFill':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:114:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:119:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:121:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:223:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp
[  2%] Linking C executable msi2lmp
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/msi2lmp.dir/link.txt --verbose=1
/usr/bin/cc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro -rdynamic CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o  -o msi2lmp -lm 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  2%] Built target msi2lmp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h: In constructor 'TreeNode::TreeNode(const int&, TreeNode*, TreeNode*, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h:36:6: warning: 'TreeNode::data' will be initialized after [-Wreorder]
BUILDSTDERR:   int data;
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h:32:12: warning:   'TreeNode* TreeNode::left' [-Wreorder]
BUILDSTDERR:   TreeNode *left;
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp:22:1: warning:   when initialized here [-Wreorder]
BUILDSTDERR:  TreeNode::TreeNode (const int & item, TreeNode *lptr,TreeNode *rptr,
BUILDSTDERR:  ^
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/atc.dir/DependInfo.cmake --color=
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/cslib.dir/DependInfo.cmake --color=
Scanning dependencies of target cslib
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp: In member function 'void CSLIB_NS::CSlib::onefield(int, int, int&, int&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp:649:26: warning: 'bigbytes' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    nbytes = (int) bigbytes;
BUILDSTDERR:                           ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp:20:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp: In member function 'virtual void CSLIB_NS::MsgFile::recv(int&, int*&, int&, char*&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:125:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(lengths,sizeof(int),2,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:132:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(header,sizeof(int),nheader,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:135:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(buf,1,nbuf,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp
Scanning dependencies of target atc
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  3%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp: In member function 'void CSLIB_NS::MsgMPITwo::init(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp:60:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(port,MPI_MAX_PORT_NAME,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  3%] Linking CXX static library libcsnompi.a
/usr/bin/cmake3 -P CMakeFiles/cslib.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/cslib.dir/link.txt --verbose=1
/usr/bin/ar qc libcsnompi.a  CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o
/usr/bin/ranlib libcsnompi.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  3%] Built target cslib
[  3%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp
[  3%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp
[  4%] Linking CXX static library libpoems.a
/usr/bin/cmake3 -P CMakeFiles/poems.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/poems.dir/link.txt --verbose=1
/usr/bin/ar qc libpoems.a  CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o
/usr/bin/ranlib libpoems.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  4%] Built target poems
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/h5md.dir/DependInfo.cmake --color=
Scanning dependencies of target h5md
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  4%] Building C object CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c
[  4%] Linking C static library libh5md.a
/usr/bin/cmake3 -P CMakeFiles/h5md.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1
/usr/bin/ar qc libh5md.a  CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o
/usr/bin/ranlib libh5md.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  4%] Built target h5md
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
Scanning dependencies of target gitversion
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/cmake3 -DCMAKE_CURRENT_SOURCE_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles" -P /builddir/build/BUILD/lammps-stable_5Jun2019/cmake/Modules/generate_lmpgitversion.cmake
-- Generating lmpgitversion.h...
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  4%] Built target gitversion
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/gpu.dir/DependInfo.cmake --color=
Scanning dependencies of target gpu
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  4%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In member function 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:182:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (_ef_atom)
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:196:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (_vf_atom)
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In member function 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:231:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (_ef_atom)
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:250:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (_vf_atom)
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In instantiation of 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*, double&) [with numtyp = float; acctyp = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:313:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:224:7: warning: unused variable 'ii' [-Wunused-variable]
BUILDSTDERR:    int ii, vstart=0, iend=_inum;
BUILDSTDERR:        ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp
[  8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp: In instantiation of 'void LAMMPS_AL::EAM<numtyp, acctyp>::loop(bool, bool) [with numtyp = float; acctyp = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:533:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:448:14: warning: variable 'vflag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int eflag, vflag;
BUILDSTDERR:               ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
Scanning dependencies of target ocl_get_devices
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 10%] Building CXX object CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DUCL_OPENCL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp:25:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp
[ 10%] Linking CXX executable ocl_get_devices
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro -rdynamic CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o  -o ocl_get_devices -lOpenCL 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 10%] Built target ocl_get_devices
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'void Lepton::CompiledExpression::compileExpression(const Lepton::ExpressionTreeNode&, std::vector<std::pair<Lepton::ExpressionTreeNode, int> >&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:91:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < node.getChildren().size(); i++) {
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:113:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              for (int i = 1; i < args.size(); i++)
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'double Lepton::CompiledExpression::evaluate() const':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:170:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < variablesToCopy.size(); i++)
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:175:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int step = 0; step < operation.size(); step++) {
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:180:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              for (int i = 0; i < args.size(); i++)
BUILDSTDERR:                                            ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp
[ 13%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const std::vector<Lepton::ExpressionTreeNode>&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:40:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&, const Lepton::ExpressionTreeNode&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:47:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:53:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:58:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.h:9,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ParsedExpression Lepton::Parser::parse(const string&, const std::map<std::basic_string<char>, Lepton::CustomFunction*>&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:181:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (pos != tokens.size())
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:190:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos != tokens.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ExpressionTreeNode Lepton::Parser::parsePrecedence(const std::vector<Lepton::ParseToken>&, int&, const std::map<std::basic_string<char>, Lepton::CustomFunction*>&, const std::map<std::basic_string<char>, Lepton::ExpressionTreeNode>&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:201:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (pos == tokens.size())
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:227:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen)
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:241:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen)
BUILDSTDERR:                                 ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Linking CXX static library libcolvars.a
/usr/bin/cmake3 -P CMakeFiles/colvars.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/colvars.dir/link.txt --verbose=1
/usr/bin/ar qc libcolvars.a  CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o
/usr/bin/ranlib libcolvars.a
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 14%] Built target colvars
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_kernel.h:27:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Array.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Array2D.h:9,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Linking CXX static library libgpu.a
/usr/bin/cmake3 -P CMakeFiles/gpu.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/gpu.dir/link.txt --verbose=1
/usr/bin/ar qc libgpu.a  CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/ranlib libgpu.a
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 16%] Built target gpu
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp:2:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::string, ATC::RESTART_LIST*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp:164:42: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&myVal,sizeof(double),1,fp);
BUILDSTDERR:                                           ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseVector.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.h:11,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp
[ 19%] Linking CXX static library libatc.a
/usr/bin/cmake3 -P CMakeFiles/atc.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/atc.dir/link.txt --verbose=1
/usr/bin/ar qc libatc.a  CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/ranlib libatc.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 19%] Built target atc
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/lammps.dir/DependInfo.cmake --color=
Scanning dependencies of target lammps
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp.o
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:337:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:346:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:349:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp:132:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp: In member function 'void LAMMPS_NS::Atom::data_atoms(int, char*, LAMMPS_NS::tagint, LAMMPS_NS::tagint, int, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp:979:48: warning: 'iptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        imagedata = ((imageint) (atoi(values[iptr]) + IMGMAX) & IMGMASK) |
BUILDSTDERR:                                                 ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:338:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:347:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:350:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp:130:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp: In member function 'virtual void LAMMPS_NS::CommBrick::borders()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp:714:28: warning: 'nfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nsend,nrecv,sendflag,nfirst,nlast,ngroup;
BUILDSTDERR:                             ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp: In member function 'void LAMMPS_NS::CommTiled::box_drop_brick(int, double*, double*, int&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp:1500:17: warning: 'dir' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += dir;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp: In member function 'virtual void LAMMPS_NS::ComputeADF::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp:312:7: warning: 'x0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int x0;
BUILDSTDERR:        ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp: In member function 'virtual void LAMMPS_NS::CommTiled::borders()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp:818:9: warning: 'nlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          for (i = atom->nlocal; i < nlast; i++) {
BUILDSTDERR:          ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp: In member function 'int LAMMPS_NS::ComputeAngleLocal::compute_angles(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:301:25: warning: 'theta' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ptr[n] = 180.0*theta/MY_PI;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:309:17: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ivar++;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:247:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:245:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->angle_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp: In member function 'int LAMMPS_NS::ComputeBondLocal::compute_bonds(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:400:28: warning: 'engrot' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engrot;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:397:28: warning: 'engvib' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engvib;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:403:30: warning: 'engtrans' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engtrans;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:391:28: warning: 'engpot' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engpot;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:406:34: warning: 'omegasq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = sqrt(omegasq);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:409:26: warning: 'vvib' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = vvib;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:413:19: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ivar++;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:281:47: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          btype = onemols[imol]->bond_type[iatom][i];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:281:29: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          btype = onemols[imol]->bond_type[iatom][i];
BUILDSTDERR:                              ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp.o
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin1d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1512:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap < boxlo[idim]) xremap += prd[idim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1513:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap >= boxhi[idim]) xremap -= prd[idim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1512:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap < boxlo[idim]) xremap += prd[idim];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin2d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1614:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap < boxlo[jdim]) yremap += prd[jdim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1615:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap >= boxhi[jdim]) yremap -= prd[jdim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1614:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap < boxlo[jdim]) yremap += prd[jdim];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin3d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1747:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap < boxlo[kdim]) zremap += prd[kdim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1748:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap >= boxhi[kdim]) zremap -= prd[kdim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1747:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap < boxlo[kdim]) zremap += prd[kdim];
BUILDSTDERR:                               ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In constructor 'LAMMPS_NS::ComputeChunkAtom::ComputeChunkAtom(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:413:29: warning: 'scale' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          delta[idim] *= scale;
BUILDSTDERR:                              ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp: In member function 'int LAMMPS_NS::ComputeDihedralLocal::compute_dihedrals(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:321:17: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ivar++;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:245:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:244:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->dihedral_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp: In member function 'virtual void LAMMPS_NS::ComputeGlobalAtom::compute_peratom()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp:521:29: warning: 'vmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j >= 0 && j < vmax) array_atom[i][m] = source[j];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp:452:29: warning: 'vmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j >= 0 && j < vmax) array_atom[i][m] = source[j];
BUILDSTDERR:                              ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp: In member function 'int LAMMPS_NS::ComputeImproperLocal::compute_impropers(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:163:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:162:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->improper_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:218:17: warning: 'cbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            cbuf[n] = 180.0*acos(c)/MY_PI;
BUILDSTDERR:                  ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp: In member function 'virtual double LAMMPS_NS::ComputePressure::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp:205:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp: In member function 'virtual void LAMMPS_NS::ComputePressure::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp:243:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp: In member function 'void LAMMPS_NS::CreateAtoms::add_random()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:668:55: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              coord[1] < boxlo[1] || coord[1] >= boxhi[1] ||
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:668:31: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              coord[1] < boxlo[1] || coord[1] >= boxhi[1] ||
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp: In member function 'void LAMMPS_NS::CreateAtoms::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:229:46: warning: 'molseed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ranmol = new RanMars(lmp,molseed+comm->me);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:119:24: warning: 'iarg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (strcmp(arg[iarg],"basis") == 0) {
BUILDSTDERR:                         ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp: In member function 'void LAMMPS_NS::CreateBonds::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp:129:10: warning: 'style' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    } else if (style == SANGLE) {
BUILDSTDERR:           ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:322:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:331:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:334:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp: In member function 'void LAMMPS_NS::Domain::box_too_small_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:855:43: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:855:25: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                          ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp: In member function 'virtual void LAMMPS_NS::Dump::write()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:516:20: warning: 'vhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->v = vhold;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:515:20: warning: 'xhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->x = xhold;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:517:28: warning: 'imagehold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->image = imagehold;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp: In member function 'void LAMMPS_NS::Domain::image_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:756:43: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:756:25: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                          ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp: In member function 'virtual int LAMMPS_NS::DumpCustom::count()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:1032:30: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  (*ptr != 0.0 && value != 0.0))
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:529:13: warning: 'values' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      double *values;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:528:18: warning: 'ptrhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      double *ptr,*ptrhold;
BUILDSTDERR:                   ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp: In member function 'void LAMMPS_NS::DumpImage::create_image()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1033:66: warning: 'color2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              image->draw_cylinder(xmid,x[atom2],color2,diameter,3);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1027:66: warning: 'color1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              image->draw_cylinder(x[atom1],xmid,color1,diameter,3);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:968:59: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            btype = atom->map(onemols[imol]->bond_type[iatom][m]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:968:41: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            btype = atom->map(onemols[imol]->bond_type[iatom][m]);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:831:55: warning: 'color' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        image->draw_cylinder(pt1,pt2,color,ldiamvalue,3);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1036:72: warning: 'diameter' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          } else image->draw_cylinder(x[atom1],x[atom2],color,diameter,3);
BUILDSTDERR:                                                                         ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp: In member function 'void LAMMPS_NS::Finish::end(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp:777:33: warning: 'nneighfull' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      tmp = MAX(nneigh,nneighfull);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp:777:33: warning: 'nneigh' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp:537:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp:1057:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp:854:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp:482:34: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      values[lastindex][i] = scalar;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp:499:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:700:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:911:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'int LAMMPS_NS::FixAveTime::column_length(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:971:9: warning: 'lengthone' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (lengthone != nrows)
BUILDSTDERR:          ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:629:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else vector[i] += scalar;
BUILDSTDERR:                              ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp: In member function 'void LAMMPS_NS::FixBalance::rebalance()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp:299:67: warning: 'sendproc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (lbstyle == BISECTION) irregular->migrate_atoms(0,1,sendproc);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In constructor 'LAMMPS_NS::FixAveTime::FixAveTime(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:411:9: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (value == -1)
BUILDSTDERR:          ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp: In constructor 'LAMMPS_NS::FixDeform::FixDeform(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp:184:18: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          set[index].style = VARIABLE;
BUILDSTDERR:                   ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp: In member function 'virtual void LAMMPS_NS::FixMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:847:61: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:817:61: warning: 'dy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:787:61: warning: 'dx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx;
BUILDSTDERR:                                                              ^
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp: In member function 'virtual void LAMMPS_NS::FixRecenter::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp:182:41: warning: 'bboxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ztarget = bboxlo[2] + zcom*(bboxhi[2] - bboxlo[2]);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp:182:53: warning: 'bboxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ztarget = bboxlo[2] + zcom*(bboxhi[2] - bboxlo[2]);
BUILDSTDERR:                                                      ^
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp: In member function 'void LAMMPS_NS::FixRestrain::restrain_dihedral(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp:566:33: warning: 'ddf1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    df1 = df1*cos_target[m] - ddf1*sin_target[m];
BUILDSTDERR:                                  ^
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp: In constructor 'LAMMPS_NS::FixVector::FixVector(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp:149:26: warning: 'finalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      extarray = finalvalue;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp: In member function 'void LAMMPS_NS::FixTMD::readfile(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp:457:7: warning: 'imageflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (imageflag)
BUILDSTDERR:        ^
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp: In constructor 'LAMMPS_NS::FixWall::FixWall(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp:77:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp: In constructor 'LAMMPS_NS::FixWallReflect::FixWallReflect(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp:68:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:739:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&ngroup,sizeof(int),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:751:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:755:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(names[i],sizeof(char),n,fp);
BUILDSTDERR:                                                      ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp: In member function 'void LAMMPS_NS::Image::draw_cube(double*, double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp:516:31: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            tdir[2] = camDir[2] * t;
BUILDSTDERR:                                ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:319:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:328:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:331:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp: In function 'void MathExtra::no_squish_rotate(int, double*, double*, double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:52: warning: 'kq[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:39: warning: 'kq[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:26: warning: 'kq[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:13: warning: 'kq[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:271:28: warning: 'kp[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[3] = c_phi*p[3] + s_phi*kp[3];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:270:28: warning: 'kp[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[2] = c_phi*p[2] + s_phi*kp[2];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:269:28: warning: 'kp[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[1] = c_phi*p[1] + s_phi*kp[1];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:268:28: warning: 'kp[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[0] = c_phi*p[0] + s_phi*kp[0];
BUILDSTDERR:                             ^
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1363:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1380:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1383:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1386:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1389:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1392:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1395:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1405:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1422:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1425:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1428:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1431:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1434:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp: In member function 'int LAMMPS_NS::Neighbor::choose_stencil(LAMMPS_NS::NeighRequest*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp:1675:5: warning: 'newtflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (newtflag) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp: In member function 'int LAMMPS_NS::Neighbor::choose_pair(LAMMPS_NS::NeighRequest*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp:1783:5: warning: 'newtflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (newtflag) {
BUILDSTDERR:      ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp: In member function 'virtual void LAMMPS_NS::NPairFullBin::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:104:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:102:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:102:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairFullBinGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:110:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:108:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:108:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp: In member function 'virtual void LAMMPS_NS::NPairFullMulti::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:111:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:109:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:109:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp: In member function 'virtual void LAMMPS_NS::NPairFullNsq::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:105:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:103:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:103:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:89:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairFullNsqGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:104:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:102:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:102:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:108:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:106:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:106:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtoffGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:116:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:114:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:114:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:140:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:138:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:138:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:115:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:113:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:113:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:148:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:146:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:146:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:123:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:121:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:121:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:106:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:104:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:104:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:90:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewtoffGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:115:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:113:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:113:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:127:39: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                        ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:123:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:121:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:121:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:91:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:174:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:132:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:130:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:130:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:152:41: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:72:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:220:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:178:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:176:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:176:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:153:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:71:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:220:45: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:221:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:219:29: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[inum] = i;
BUILDSTDERR:                              ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:182:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:140:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:138:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:138:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:160:41: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:72:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:169:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:130:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:128:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:128:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:148:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:76:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:114:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:189:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:149:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:147:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:147:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:168:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:78:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:117:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfSizeNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp:79:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfSizeNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp:82:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp: In member function 'virtual void LAMMPS_NS::NPairSkipRespa::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:152:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:153:36: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:223:67: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (posix_memalign(&ptr, LAMMPS_MEMALIGN, pagesize*sizeof(T)))
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:64:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp: In member function 'void LAMMPS_NS::Pair::write_file(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:1677:5: warning: 'rsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (rsq < cutsq[itype][jtype]) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:1688:32: warning: 'q_hold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (atom->q) atom->q = q_hold;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp: In member function 'virtual void LAMMPS_NS::Pair::init_tables(double, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:414:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (msmflag) ftable[i] = qqrd2e/r * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:401:30: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          etable[i] = qqrd2e/r * egamma;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:405:30: warning: 'derfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          etable[i] = qqrd2e/r * derfc;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:415:61: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            else ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:415:56: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            else ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2);
BUILDSTDERR:                                                         ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:281:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:285:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&AA[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:286:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&BB[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:287:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&aa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:288:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:289:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&beta[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:290:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:320:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:321:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:333:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:337:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:338:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:339:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:340:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:341:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:342:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:373:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:374:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:375:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:376:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:365:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:369:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:370:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:371:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:372:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:373:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:374:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:406:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:407:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:409:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:410:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:167:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:163:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:164:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:168:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:163:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:488:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:489:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        + d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:483:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:484:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:483:37: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:364:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:368:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:369:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:370:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:371:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:372:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:373:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:405:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:406:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:407:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:409:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulWolf::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:486:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:487:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        + d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:481:33: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:482:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:481:41: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:170:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:167:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:171:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:311:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:315:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:316:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:317:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:318:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:347:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:348:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:349:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:350:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:367:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:371:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:372:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:373:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:374:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:375:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:406:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:407:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:409:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:410:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:468:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:468:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:147:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:147:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:248:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:251:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:275:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:276:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:277:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:152:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:153:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:154:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:155:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:256:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:281:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:282:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:283:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:253:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:277:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:278:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:279:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual double LAMMPS_NS::PairCoulWolf::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:317:33: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:318:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:317:41: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                          ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:318:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:322:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:323:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:324:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:352:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:353:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:354:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:355:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:233:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:237:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:238:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:266:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_start,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:267:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_stop,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:268:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:269:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:270:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:284:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:288:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:289:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:290:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:317:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:318:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:319:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:674:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:697:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:700:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:706:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:710:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(special_lj[m],sizeof(double),4,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:713:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:717:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(special_coul[m],sizeof(double),4,fp);
BUILDSTDERR:                                                               ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp: In member function 'virtual void LAMMPS_NS::PairHybridOverlay::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp:47:7: warning: 'multflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int multflag;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:399:7: warning: 'multflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int multflag;
BUILDSTDERR:        ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:610:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:614:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:615:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:616:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:645:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:646:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:647:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:648:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:392:44: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_lj*forcelj*r2inv;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:396:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:282:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:286:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:287:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:288:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:289:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:316:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual double LAMMPS_NS::PairLJCubic::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:348:32: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:345:66: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:133:40: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:130:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:604:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:608:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:609:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:610:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:639:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:640:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:641:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:642:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:356:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:360:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:361:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:362:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:363:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:393:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:394:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:395:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:396:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:397:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:452:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:139:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:386:44: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_lj*forcelj*r2inv;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:390:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:173:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:174:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:175:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:176:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:177:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulDebye::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:215:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:211:71: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:211:53: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:109:72: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:109:54: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:112:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:379:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:383:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:384:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:385:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:415:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:416:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:417:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:418:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:419:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:420:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:167:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:168:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:161:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:167:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:37: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:458:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:375:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:379:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:380:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:381:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:412:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:413:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:414:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:415:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:416:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:417:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:171:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:164:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:327:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:331:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:332:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:333:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:334:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:363:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:364:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:365:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:366:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:344:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:348:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:349:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:350:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:351:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:381:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:382:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:383:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:384:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual double LAMMPS_NS::PairLJGromacs::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:438:65: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:140:71: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:382:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:386:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:387:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:416:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:417:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:418:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_inner,sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:419:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:420:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:421:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual double LAMMPS_NS::PairLJGromacsCoulGromacs::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:503:51: warning: 'tlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:499:66: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:492:38: warning: 'tc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tc*tc*tc * (coulsw3 + coulsw4*tc);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:159:58: warning: 'tc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoulswitch = tc*tc*tc * (coulsw3 + coulsw4*tc);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:169:59: warning: 'tlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:165:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:165:46: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:355:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:359:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:360:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:361:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:362:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:392:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:393:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:394:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:395:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual double LAMMPS_NS::PairLJSmooth::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:453:30: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:452:60: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:448:19: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]) -
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:143:38: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:142:68: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:138:27: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:                            ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:286:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:290:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:291:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:292:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:319:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:320:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:631:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:635:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:636:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:637:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamR[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:638:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamA[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:639:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:670:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:671:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:672:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:673:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:268:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:272:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:273:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:274:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:275:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:303:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:304:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:305:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:394:46: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_mie*forcemie*r2inv;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:398:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:249:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:253:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&prefactor[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:254:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:279:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:978:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:979:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:980:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewaldflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:981:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&pppmflag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:982:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&msmflag,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:983:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dispersionflag,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:984:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tip4pflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual double LAMMPS_NS::PairTable::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1043:41: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1043:14: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1040:35: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phi = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:177:49: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:177:22: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:174:45: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:289:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:293:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:294:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:295:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:323:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:324:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:325:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:255:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:259:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:260:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:287:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:288:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:289:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:290:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp: In member function 'virtual void LAMMPS_NS::PairZBL::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp:141:53: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp: In member function 'virtual double LAMMPS_NS::PairZBL::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp:289:45: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                              ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:175:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:179:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:204:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:205:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&coeffflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp: In member function 'void LAMMPS_NS::ProcMap::output(char*, int*, int***)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:687:16: warning: 'kme' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[5] = kme + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:686:16: warning: 'jme' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[4] = jme + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:685:16: warning: 'ime' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[3] = ime + 1;
BUILDSTDERR:                 ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp: In member function 'int LAMMPS_NS::ProcMap::best_factors(int, int**, int*, int, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:881:10: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return index;
BUILDSTDERR:           ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp: In member function 'void LAMMPS_NS::RCB::compute(int, int, double**, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:559:73: warning: 'procpartner2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world);
BUILDSTDERR:                                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:487:29: warning: 'valuehalf_select' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else lo[dim] = valuehalf;
BUILDSTDERR:                              ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp: In member function 'void LAMMPS_NS::RCB::compute_old(int, int, double**, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:1051:73: warning: 'procpartner2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world);
BUILDSTDERR:                                                                          ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp: In member function 'LAMMPS_NS::bigint LAMMPS_NS::ReadDump::seek(LAMMPS_NS::bigint, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:289:10: warning: 'ntimestep' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bigint ntimestep;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp: In member function 'LAMMPS_NS::bigint LAMMPS_NS::ReadDump::next(LAMMPS_NS::bigint, LAMMPS_NS::bigint, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:429:5: warning: 'eofflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (eofflag) ntimestep = -1;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:384:10: warning: 'ntimestep' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bigint ntimestep;
BUILDSTDERR:           ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:307:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:311:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&procsperfile,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:314:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:318:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:324:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(buf,sizeof(double),n,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:384:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:387:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&procsperfile,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:396:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:400:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:406:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(buf,sizeof(double),n,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::file_layout()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1106:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(all_written_send_sizes,sizeof(int),nprocs_file,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'char* LAMMPS_NS::ReadRestart::read_string()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1288:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(value,sizeof(char),n,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1300:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(vec,sizeof(int),n,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1311:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(vec,sizeof(double),n,fp);
BUILDSTDERR:                                               ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp: In member function 'int LAMMPS_NS::Region::surface(double, double, double, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:191:34: warning: 'xorig[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].delz = xorig[2] - zs;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:190:34: warning: 'xorig[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].dely = xorig[1] - ys;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:189:34: warning: 'xorig[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].delx = xorig[0] - xs;
BUILDSTDERR:                                   ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp: In member function 'virtual int LAMMPS_NS::RegBlock::surface_exterior(double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'zp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    add_contact(0,x,xp,yp,zp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'yp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'xp' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp: In member function 'virtual int LAMMPS_NS::RegCylinder::surface_exterior(double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'zp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      add_contact(0,x,xp,yp,zp);
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'yp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'xp' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp: In member function 'void LAMMPS_NS::Run::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp:173:41: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (stopflag) update->endstep = stop;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp:171:45: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (startflag) update->beginstep = start;
BUILDSTDERR:                                              ^
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp: In member function 'void LAMMPS_NS::Set::setrandom(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp:1152:24: warning: 'quat' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            quat[1] = 0.0;
BUILDSTDERR:                         ^
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp: In member function 'void LAMMPS_NS::Universe::reorder(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp:149:38: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    MPI_Comm_split(uorig,0,key,&uworld);
BUILDSTDERR:                                       ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:684:33: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(fp,"%d",&nextindex);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp: In member function 'void LAMMPS_NS::Velocity::set(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:548:63: warning: 'zvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(zvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:543:63: warning: 'yvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(yvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:538:63: warning: 'xvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(xvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:461:17: warning: 'vz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vz *= zscale;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:457:17: warning: 'vy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vy *= yscale;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:453:17: warning: 'vx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vx *= xscale;
BUILDSTDERR:                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:34:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.h: In member function 'void LAMMPS_NS::Velocity::create(double, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.h:172:5: warning: 'vhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sfree(array[0]);
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:169:12: note: 'vhold' was declared here
BUILDSTDERR:    double **vhold;
BUILDSTDERR:             ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::group_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3933:39: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    } else argstack[nargstack++] = value;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'double LAMMPS_NS::Variable::evaluate_boolean(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4703:7: warning: 'op' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int op,opprevious,flag1,flag2;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp: In member function 'void LAMMPS_NS::LAMMPS::init_pkg_lists()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:899:6: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without
BUILDSTDERR:  void LAMMPS::init_pkg_lists()
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::special_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4007:20: warning: 'nstride' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      int index,nvec,nstride;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4150:7: warning: 'nvec' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        for (int i = 0; i < nvec; i++) {
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'double LAMMPS_NS::Variable::evaluate(char*, LAMMPS_NS::Variable::Tree**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:1185:7: warning: 'op' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int op,opprevious;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp: In constructor 'LAMMPS_NS::LAMMPS::LAMMPS(int, char**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:163:14: warning: 'wlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int wfirst,wlast;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:163:7: warning: 'wfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int wfirst,wlast;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'void LAMMPS_NS::Variable::compute_atom(int, int, double*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:1007:53: warning: 'vstore' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (mask[i] & groupbit) result[m] = vstore[i];
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp: In member function 'virtual double LAMMPS_NS::ComputeERotateAsphere::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:139:35: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertia[0] = tbonus[tri[i]].inertia[0];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:130:32: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          length = lbonus[line[i]].length;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:109:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::math_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3685:37: warning: 'value2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        double value = value1 + value2*(1.0-cos(omega*delta*update->dt));
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3382:42: warning: 'value1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        argstack[nargstack++] = sqrt(value1);
BUILDSTDERR:                                           ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp: In member function 'virtual void LAMMPS_NS::FixNVEAsphereNoforce::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp:94:33: warning: 'bonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = bonus[ellipsoid[i]].shape;
BUILDSTDERR:                                  ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:466:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:469:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:473:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:477:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:478:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:479:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:511:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamma,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:512:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&upsilon,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:513:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:514:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:515:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:516:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:444:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:447:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:451:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:455:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:456:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:457:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:485:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:486:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp: In member function 'virtual void LAMMPS_NS::PairLineLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp:307:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'double LAMMPS_NS::PairGayBerne::gayberne_analytic(int, int, double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double*, double, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:36: warning: 'deta2[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:36: warning: 'deta2[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:36: warning: 'deta2[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:21: warning: 'dchi2[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:21: warning: 'dchi2[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:21: warning: 'dchi2[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:51: warning: '*((void*)& dUr2 +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:51: warning: '*((void*)& dUr2 +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:51: warning: 'dUr2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp: In member function 'virtual void LAMMPS_NS::PairTriLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp:381:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:219:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:194:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::BodyRoundedPolyhedron::data_body(int, int, int, int*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp:213:7: warning: 'nedges' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nedges,nentries;
BUILDSTDERR:        ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp: In member function 'virtual void LAMMPS_NS::FixWallBodyPolygon::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp:341:60: warning: 'wall_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                            contact_list, num_contacts, facc);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp:303:9: warning: 'eradi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (delr > eradi) dz = cylradius;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolygon::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:245:11: warning: variable 'interact' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        int interact, num_contacts, done;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:14: warning: variable 'rsqinv' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:33: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:39: warning: variable 'eradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:45: warning: variable 'rradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:51: warning: variable 'rradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'void LAMMPS_NS::PairBodyRoundedPolygon::sphere_against_sphere(int, int, double, double, double, double, double, double, double**, double**, double**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:602:10: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double eradi,eradj,rradi,rradj;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:602:16: warning: variable 'eradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double eradi,eradj,rradi,rradj;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:604:32: warning: variable 'fn' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rij,rsqinv,R,fx,fy,fz,fn[3],ft[3],fpair,shift,energy;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:604:38: warning: variable 'ft' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rij,rsqinv,R,fx,fy,fz,fn[3],ft[3],fpair,shift,energy;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'int LAMMPS_NS::PairBodyRoundedPolygon::vertex_against_edge(int, int, double, double, double**, double**, double**, LAMMPS_NS::tagint*, LAMMPS_NS::PairBodyRoundedPolygon::Contact*, int&, double&, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:707:24: warning: variable 'nei' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ni, npi, ifirst, nei, iefirst;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:707:29: warning: variable 'iefirst' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ni, npi, ifirst, nei, iefirst;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:708:11: warning: variable 'npj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int nj, npj, jfirst, nej, jefirst;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:709:32: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double xpi[3], xpj[3], dist, eradi, eradj, rradi, rradj;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::FixWallBodyPolyhedron::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp:361:58: warning: 'wall_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                          contact_list, num_contacts, facc);
BUILDSTDERR:                                                           ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp: In member function 'virtual void LAMMPS_NS::PairBodyNparticle::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp:327:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolyhedron::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:277:11: warning: variable 'interact' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        int interact, num_contacts;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'void LAMMPS_NS::PairBodyRoundedPolyhedron::sanity_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:2347:22: warning: variable 'x3' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x1[3],x2[3],x3[3],x4[3],h_a[3],h_b[3],d_a,d_b;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:2347:28: warning: variable 'x4' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x1[3],x2[3],x3[3],x4[3],h_a[3],h_b[3],d_a,d_b;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:375:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:376:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:377:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:378:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:380:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:381:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:382:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:384:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:385:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:386:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:387:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolygon::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:107:15: warning: 'iefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nei,nej,iefirst,jefirst;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:107:7: warning: 'nei' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nei,nej,iefirst,jefirst;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:106:21: warning: 'ifirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:106:13: warning: 'npi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:186:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:187:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:188:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:189:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:839:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:840:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:841:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:842:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:843:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:844:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:846:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:847:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:848:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:849:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:851:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:852:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:853:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:854:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:856:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:857:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:858:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:859:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:861:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:862:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:863:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:864:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:866:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:867:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:868:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:869:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:871:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:872:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:873:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:875:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:876:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:877:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:608:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:609:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:611:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:612:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:613:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:614:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:615:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:616:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:310:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:314:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:315:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:316:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:345:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:346:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:347:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:348:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp: In member function 'void LAMMPS_NS::ImproperClass2::angleangle(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:824:58: warning: 'eimproper' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                 delxBD-delxBC,delyBD-delyBC,delzBD-delzBC);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolyhedron::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:221:21: warning: 'eradi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r > eradi + eradj + cut_inner) continue;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:43: warning: 'iefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:35: warning: 'nei' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:21: warning: 'ifirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:13: warning: 'npi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:              ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:366:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:372:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:373:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:406:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:407:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:464:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:464:37: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:144:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:144:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:406:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:410:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:411:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:412:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:443:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:444:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:445:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:446:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:447:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:448:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:449:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:538:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:538:37: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:531:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:531:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:534:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:529:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:176:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:181:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:184:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:184:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:178:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:178:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:609:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:613:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:614:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:649:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:650:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:651:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagfld,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:652:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:653:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:654:42: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_target, sizeof(double),1,fp);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:655:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed, sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:656:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:657:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:658:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:659:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:308:42: warning: 'a_pu' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_pu);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:240:42: warning: 'a_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_sh);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:400:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:404:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a12[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:405:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:406:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:407:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:408:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:438:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:439:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:440:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp: In member function 'virtual void LAMMPS_NS::PairBrownianPoly::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp:295:42: warning: 'a_pu' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_pu);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp:244:42: warning: 'a_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_sh);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual double LAMMPS_NS::PairColloid::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:543:20: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return factor_lj*phi;
BUILDSTDERR:                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:194:22: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        f[i][2] += delz*fpair;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:689:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:693:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:694:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:727:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:728:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:729:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagfld,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:730:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:731:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:732:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:733:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:734:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:735:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1916:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1920:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1921:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1953:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1954:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1955:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1956:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1957:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1958:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1959:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1960:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSFCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:147:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:143:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:144:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:148:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:143:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:188:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:180:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:185:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:189:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:182:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:182:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolfCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:149:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:146:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:150:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:186:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:178:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:183:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:186:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:180:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:180:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:168:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:173:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:170:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:170:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:440:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:444:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:476:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:516:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:546:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:543:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:239:34: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:237:35: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:235:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:235:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:239:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:244:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:183:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:188:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:192:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:185:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:185:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:498:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:528:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:70: warning: 'd2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:62: warning: 'd1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:54: warning: 'd0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:47: warning: 'b2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:39: warning: 'b1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:31: warning: 'b0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:70: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:62: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:54: warning: 'g0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:301:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp: In member function 'virtual void LAMMPS_NS::FixPour::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:680:42: warning: 'natom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ninserted_mols = ninserted_atoms / natom;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:696:35: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        atom->nbonds += onemols[imol]->nbonds * ninserted_mols;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:654:65: warning: 'denstmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            atom->rmass[n] = 4.0*MY_PI/3.0 * radtmp*radtmp*radtmp * denstmp;
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:503:30: warning: 'radtmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          coords[0][3] = radtmp;
BUILDSTDERR:                               ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp: In member function 'void LAMMPS_NS::FixWallGran::granular(double, double, double, double, double*, double, double*, double*, double*, double*, double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:49: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:36: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:23: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1174:55: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    damp_normal_prefactor = normal_coeffs[1]*damp_normal;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1205:23: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      F_pulloff = 4*M_PI*coh*Reff;
BUILDSTDERR:                        ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:546:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:572:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kn,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:573:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kt,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:574:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamman,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:575:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gammat,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:576:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&xmu,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:577:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dampflag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1254:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1258:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&normal_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1259:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&damping_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1260:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&tangential_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1261:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&roll_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1262:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&twist_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1263:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&normal_coeffs[i][j],sizeof(double),4,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1264:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&tangential_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1265:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&roll_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1266:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&twist_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1267:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual double LAMMPS_NS::PairGranular::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1645:27: warning: 'magtortwist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[8] = magtortwist;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1643:19: warning: 'fr3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[6] = fr3;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1642:19: warning: 'fr2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[5] = fr2;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1641:19: warning: 'fr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[4] = fr1;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1644:18: warning: 'fr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[7] = fr;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:49: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:36: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:23: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1627:55: warning: 'history' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtortwist = -k_twist*history[twist_history_index] - damp_twist*magtwist;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1462:69: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    damp_normal_prefactor = normal_coeffs[itype][jtype][1]*damp_normal;
BUILDSTDERR:                                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1437:40: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sqrt3 = MAX(0, 4*dR - t5 + SIXROOT6*coh*MY_PI*R2/(E*t6));
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1437:50: warning: 'R2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sqrt3 = MAX(0, 4*dR - t5 + SIXROOT6*coh*MY_PI*R2/(E*t6));
BUILDSTDERR:                                                   ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:385:49: warning: 'allhistory' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            history = &allhistory[size_history*jj];
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:455:71: warning: 'history' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              shrmag = sqrt(history[0]*history[0] + history[1]*history[1] +
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:171:8: warning: 'touch' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *touch,**firsttouch;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:392:30: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            F_pulloff = 4*MY_PI*coh*Reff;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:55: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:42: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:29: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:356:75: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          damp_normal_prefactor = normal_coeffs[itype][jtype][1]*damp_normal;
BUILDSTDERR:                                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:229:34: warning: 'firsthistory' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        allhistory = firsthistory[i];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:228:27: warning: 'firsttouch' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        touch = firsttouch[i];
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp: In function 'void fft_3d(double (*)[2], double (*)[2], int, fft_plan_3d*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:9: warning: variable 'total' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:15: warning: variable 'length' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:22: warning: unused variable 'offset' [-Wunused-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:                       ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:921:79: warning: 'normal_coeffs_one[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          normal_coeffs[i][j][0] = normal_coeffs[j][i][0] = normal_coeffs_one[0];
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:913:61: warning: 'normal_coeffs_one[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        normal_coeffs[i][j][1] = normal_coeffs[j][i][1] = damp;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:919:60: warning: 'normal_coeffs_one[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                      poiss[i][j],poiss[i][j]);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:924:79: warning: 'normal_coeffs_one[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          normal_coeffs[i][j][3] = normal_coeffs[j][i][3] = normal_coeffs_one[3];
BUILDSTDERR:                                                                                ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual double LAMMPS_NS::PairGranular::init_one(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1214:10: warning: 'cutoff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return cutoff;
BUILDSTDERR:           ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:426:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:430:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:431:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:432:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:433:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:434:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:435:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:469:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:470:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:471:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:472:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:473:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:474:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:475:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:567:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:568:28: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:560:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:560:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:563:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:558:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:190:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:182:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:187:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:191:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:184:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:184:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:188:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:185:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:184:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:189:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:247:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:248:28: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:243:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:242:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:403:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:407:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:408:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:409:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:410:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:442:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:443:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:444:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:445:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:446:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:447:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:448:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:538:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:538:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:531:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:531:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:534:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:529:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:183:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:175:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:180:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:183:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:177:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:177:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:184:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:181:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:180:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:184:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:242:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:242:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:238:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:237:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:360:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:364:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_a_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:365:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_rho_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:366:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_c_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:367:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_buck_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:399:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_buck_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:400:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:401:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:402:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:403:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:404:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:405:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:296:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:299:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&scale[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:325:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:326:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:327:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:328:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:329:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:376:29: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:378:26: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:378:38: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:376:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:160:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:165:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:162:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:162:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp: In member function 'virtual void LAMMPS_NS::MSM::direct(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1642:47: warning: 'v5sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v5sum += v5_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1641:47: warning: 'v4sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v4sum += v4_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1640:47: warning: 'v3sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v3sum += v3_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1639:47: warning: 'v2sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v2sum += v2_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1638:47: warning: 'v1sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v1sum += v1_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1637:47: warning: 'v0sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v0sum += v0_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:151:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:146:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:148:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:148:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:206:31: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:208:26: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:208:38: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:206:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp: In member function 'void LAMMPS_NS::MSM::direct_top(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1997:50: warning: 'v5sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v5sum += v5_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1996:50: warning: 'v4sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v4sum += v4_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1995:50: warning: 'v3sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v3sum += v3_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1994:50: warning: 'v2sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v2sum += v2_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1993:50: warning: 'v1sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v1sum += v1_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1992:50: warning: 'v0sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v0sum += v0_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:828:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:832:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:833:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:867:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:868:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switche/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
s -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:385:39: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:413:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:385:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:419:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:416:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:972:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:964:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:964:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:967:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:962:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:896:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:901:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:902:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:903:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:935:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:936:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:937:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:938:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:522:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:514:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:514:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:517:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:512:33: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*egamma;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:216:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:211:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:220:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:213:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:213:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:220:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:519:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:553:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:550:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmfswCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1049:34: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        philj6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1044:16: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1032:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1032:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1035:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1030:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:196:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:201:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:205:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:198:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:198:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:205:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:571:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:614:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:611:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:798:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:802:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:803:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:804:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:835:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:836:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:837:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:838:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:839:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:840:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:841:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:218:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:223:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:239:42: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:220:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:220:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:237:47: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl12 = r6inv*lj3[itype][jtype]*r6inv -
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:932:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:924:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:924:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:927:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:922:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulMSM::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:364:39: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:388:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:364:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:394:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:391:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:511:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:541:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:538:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:474:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:466:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:466:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:469:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:464:33: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*egamma;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:208:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:203:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:212:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:205:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:182:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:205:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:187:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:191:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:184:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:184:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:536:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:542:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:414:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:419:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:416:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:409:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:408:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:336:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:332:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:416:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:360:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:364:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:365:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:366:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:397:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:398:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:399:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:400:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:401:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:402:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:403:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1547:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1548:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1554:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:475:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:476:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:477:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:478:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:479:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:382:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:387:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:384:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:377:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:376:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:304:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:300:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:384:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_middle()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:979:18: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:975:18: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:948:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:944:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:450:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:455:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:452:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:445:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:444:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:372:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:368:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:452:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_inner()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:718:18: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:714:18: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:687:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:683:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1420:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1419:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1321:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1317:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp: In member function 'virtual void LAMMPS_NS::FixQEQComb::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp:166:32: warning: 'ilist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,ii,iloop,loopmax,inum,*ilist;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp:166:26: warning: 'inum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,ii,iloop,loopmax,inum,*ilist;
BUILDSTDERR:                           ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3398:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3399:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:312:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:315:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:340:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:341:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_triple,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp:629:66: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fp,filename,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                                   ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::TORSION(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:1241:64: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ev_tally4(i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl);
BUILDSTDERR:                                                                 ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4981:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);  // skip first comment line
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4982:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4987:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5016:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5084:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);  // skip first comment line
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5086:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5088:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5092:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5097:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5101:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5103:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5105:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5114:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5121:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5125:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5129:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5131:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5135:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5137:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5141:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5143:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5147:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5149:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5153:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5155:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5159:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5161:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5163:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5172:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLINE,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5179:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5187:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5195:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5203:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5210:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5214:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5231:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLINE,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::Spbicubic(double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:4175:49: warning: 'yn1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (j > 0) df[1] += c * ((double) j) * xn * yn1;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::Sptricubic(double, double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:4215:46: warning: 'zn1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (k > 0) df[2] += c * kr * xn * yn * zn1;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::piRCSpline(double, double, double, int, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3283:10: warning: 'piRC' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return piRC;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5222:5: warning: 'nws' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(nws==3) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4967:13: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,k,n,m;
BUILDSTDERR:              ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:326:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:327:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:338:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:350:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:358:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:366:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:375:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLIB,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:384:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:391:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLIB,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:404:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:422:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:431:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:               fgets(s,MAXLIB,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:446:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:464:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:473:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                fgets(s,MAXLIB,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:488:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:506:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:515:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                fgets(s,MAXLIB,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::comb_zetaterm_d(double, double, double, double, double, double*, double, double*, double, double*, double*, double*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2309:44: warning: 'com6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              {com6+=prefac_ij2*pcrossk*dfc_k;}
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::FLJ(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:811:21: warning: 'dwij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair = dC*dwij / rij;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:32: warning: 'dwmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:33: warning: 'wmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:27: warning: 'dwkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:27: warning: 'wkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:826:27: warning: 'dwkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:822:28: warning: 'wkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkjS / rikS;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:845:22: warning: 'dwikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:22: warning: 'wikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:45: warning: 'rmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:45: warning: 'rkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:826:40: warning: 'rkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:845:45: warning: 'rikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:881:76: warning: 'atomm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              v_tally4(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS);
BUILDSTDERR:                                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:881:76: warning: 'atomk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::force_zeta(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double, double, double, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, int, double&, double, double, int, int, int, double, double, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:1794:48: warning: 'prady' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       prady  += 1.0 *  btor[2] * bbtor * att_eng;
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:1793:48: warning: 'pradx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       pradx  += 1.0 *  btor[1] * bbtor * att_eng;
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp: In member function 'double LAMMPS_NS::PairBOP::sigmaBo(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    ,ftmp[2],xtmp[0],xtmp[1],xtmp[2]);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1763:42: warning: 'dis_jk[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1]
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1763:62: warning: 'dis_jk[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1]
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1764:35: warning: 'dis_jk[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                          +dis_ik[2]*dis_jk[2])/(r_ik*r_jk);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1775:51: warning: 'r_jk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      dcA_ikj[2][1]=(-dis_ik[2]*r_ik*r_jk-cosAng_ikj
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1500:38: warning: 'temp_jk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              bt_sg[nb_jk].temp=temp_jk;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3641:30: warning: 'temp_ji' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                else if(temp_kk==temp_ji&&setting==0) {
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::direct(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, int, int, int, double, double, double, double, double, double, double, double, double&, double&, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2799:20: warning: 'dcurlji' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     smf1n += dcurlji*iq*(afbn-fafbnl)*esucon/r;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2802:20: warning: 'dcurlij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     smf1j += dcurlij*jq*(afbj-fafbnl)*esucon/r;
BUILDSTDERR:                     ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:469:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:470:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:472:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:787:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:192:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:205:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:194:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp: In member function 'virtual void LAMMPS_NS::PairEAMCD::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp:387:24: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair += D_i * rhojp * t1;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:210:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp:970:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp:974:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                    ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp: In member function 'void LAMMPS_NS::PairLCBOP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:987:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:993:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:994:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:995:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&gamma_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:996:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&A);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:997:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&B_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:998:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&B_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:999:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&alpha);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1000:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&beta_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1001:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&beta_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1002:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&d);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1003:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1004:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_4);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1005:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_6);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1006:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&L);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1007:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&kappa);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1008:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&R_0);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1009:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&R_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1010:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_0);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1011:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_1_LR);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1012:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_2_LR);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1013:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&v_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1014:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&v_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1015:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1016:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1017:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&lambda_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1018:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&lambda_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1019:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1020:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&delta);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1023:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1032:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(s,MAXLINE,fp);
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1039:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; }
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1046:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1052:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:579:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:580:60: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      while (line == strchr(line,'#')) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:596:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:614:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:650:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:881:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:262:7: warning: 'emb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (emb > epsilon) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally(i,i,nlocal,newton_pair,evdwl,0.0,0.0,delx,dely,delz);
BUILDSTDERR:                                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp.o
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp: In member function 'int LAMMPS_NS::FixAtomSwap::attempt_semi_grand()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp:391:54: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          atom->v[i][0] *= sqrt_mass_ratio[itype][jtype];
BUILDSTDERR:                                                       ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp: In member function 'virtual void LAMMPS_NS::FixBondSwap::post_integrate()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:629:44: warning: 'jlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jangle = 0; jangle < num_angle[jlast]; jangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:607:44: warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jangle = 0; jangle < num_angle[jprev]; jangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:202:25: warning: 'jnext' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:618:44: warning: 'ilast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (iangle = 0; iangle < num_angle[ilast]; iangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:491:39: warning: 'iprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (iprev >= 0) iprevtag = tag[iprev];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:202:7: warning: 'inext' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:414:53: warning: 'jnextangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(jnextangletype,i,jnext,jlast) +
BUILDSTDERR:                                                      ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:419:49: warning: 'jangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(jangletype,jprev,j,jnext) -
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:418:53: warning: 'inextangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(inextangletype,i,inext,ilast) -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:413:56: warning: 'iangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              delta += angle_eng(iangletype,iprev,i,jnext) +
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:457:37: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jbond = 0; jbond < num_bond[j]; jbond++)
BUILDSTDERR:                                      ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp: In member function 'virtual void LAMMPS_NS::FixTFMC::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp:255:36: warning: 'masstotal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      group->xcm(igroup,masstotal,cm);
BUILDSTDERR:                                     ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp: In member function 'void LAMMPS_NS::Message::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp:64:3: warning: 'clientserver' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (clientserver == 1) {
BUILDSTDERR:    ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:350:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:354:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:355:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:383:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:384:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&max_cell_size,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:385:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:386:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:387:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp: In member function 'void LAMMPS_NS::Server::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp:43:3: warning: 'protocol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (protocol == MD) {
BUILDSTDERR:    ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp: In member function 'double LAMMPS_NS::FixGCMC::energy_full()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp:2297:11: warning: 'imolecule' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (imolecule == molecule[j]) continue;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp: In member function 'void LAMMPS_NS::ServerMC::loop()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:116:28: warning: 'xold[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][2] = xold[2];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:115:28: warning: 'xold[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][1] = xold[1];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:114:28: warning: 'xold[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][0] = xold[0];
BUILDSTDERR:                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:15:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.h:300:57: warning: 'atomid' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else if (map_style == 2) return map_find_hash(global);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:42:10: note: 'atomid' was declared here
BUILDSTDERR:    tagint atomid;
BUILDSTDERR:           ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int sizeofint(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:559:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    while (size >= num && num_of_bits < 32) {
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int sizeofints(int, unsigned int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:600:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    while (bytes[num_of_bytes] >= num) {
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'void sendints(int*, int, int, unsigned int*, unsigned int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:654:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (num_of_bits >= num_of_bytes * 8) {
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:655:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (i = 0; i < num_of_bytes; i++) {
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:660:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (i = 0; i < num_of_bytes-1; i++) {
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int receivebits(int*, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:695:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (lastbits < num_of_bits) {
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int xdr3dfcoord(XDR*, float*, int*, float*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:397:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define LASTIDX (sizeof(magicints) / sizeof(int) - 1 )
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:935:23: note: in expansion of macro 'LASTIDX'
BUILDSTDERR:      while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:46:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MYMIN(a,b) ((a) < (b) ? (a) : (b))
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:939:14: note: in expansion of macro 'MYMIN'
BUILDSTDERR:      maxidx = MYMIN(LASTIDX, smallidx + 8) ;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:46:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MYMIN(a,b) ((a) < (b) ? (a) : (b))
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1115:14: note: in expansion of macro 'MYMIN'
BUILDSTDERR:      maxidx = MYMIN(LASTIDX, smallidx + 8) ;
BUILDSTDERR:               ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1141:54: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[2] = receivebits(buf, bitsizeint[2]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1140:54: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[1] = receivebits(buf, bitsizeint[1]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1139:54: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[0] = receivebits(buf, bitsizeint[0]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp: In member function 'virtual void LAMMPS_NS::FixDeposit::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp:529:56: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else atom->avec->create_atom(ntype+onemols[imol]->type[m],coords[m]);
BUILDSTDERR:                                                         ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp: In member function 'virtual void LAMMPS_NS::FixEvaporate::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp:324:31: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          } else if (me == proc && i == iatom) {
BUILDSTDERR:                                ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:322:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:326:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:327:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:328:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:329:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:330:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:360:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:361:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:362:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:363:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:373:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:377:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:378:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:379:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:380:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:381:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:382:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:414:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:415:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:416:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:417:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:418:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairNMCutCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:478:65: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) -
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:150:58: warning: 'rninv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                          r0n[itype][jtype]*rninv -
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:152:58: warning: 'rminv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                          r0m[itype][jtype]*rminv) -
BUILDSTDERR:                                                           ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:420:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:424:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:425:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:426:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:427:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:428:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:461:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:462:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:463:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:464:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:465:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:466:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:467:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairNMCutCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:553:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:553:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:556:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:551:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:563:65: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) -
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:186:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:191:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:196:50: warning: 'rninv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (mm[itype][jtype]*r0n[itype][jtype]*rninv -
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:197:50: warning: 'rminv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                 nn[itype][jtype]*r0m[itype][jtype]*rminv) - offset[itype][jtype];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:188:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:188:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:248:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:249:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:250:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k_ub[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:251:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r_ub[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp:196:70: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                                       ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp: In member function 'virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:249:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:250:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:251:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp:218:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp:219:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp: In member function 'virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp:218:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp:219:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp:292:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp:293:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:219:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:220:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:221:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:222:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp: In member function 'virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:228:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:229:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:230:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:231:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:232:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp:171:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp:172:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp:171:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp:172:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp: In member function 'virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:170:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp: In member function 'virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:175:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&d0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:176:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:177:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:171:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:172:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&lamda[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp: In member function 'virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:280:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:281:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:282:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:283:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&rc[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:284:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&u0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp.o
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp:236:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp:237:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:471:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:428:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:429:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:430:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:431:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:432:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weightflag,sizeof(int),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:472:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:473:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:474:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:475:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weightflag,sizeof(int),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:332:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:333:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:334:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:327:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:328:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:329:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:322:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:334:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:323:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:324:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:325:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:326:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:335:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:336:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:337:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:338:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:339:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sign[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:340:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:208:15: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:207:18: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp:279:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp:280:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:320:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:321:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:322:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:378:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:382:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:439:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_inner,sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingMorse::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:301:9: warning: 'donor_flag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (donor_flag == 0) type2param[i][j][k] = nparams;
BUILDSTDERR:          ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulCharmm::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:501:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:152:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:167:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingMorse::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:122:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual double LAMMPS_NS::PairHbondDreidingLJ::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:511:41: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual double LAMMPS_NS::PairHbondDreidingMorse::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:414:41: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingLJ::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:374:9: warning: 'donor_flag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (donor_flag == 0) type2param[i][j][k] = nparams;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:200:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:133:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:133:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:436:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:440:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:473:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:620:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:624:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:662:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:533:34: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        philj6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:528:16: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:668:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:479:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:506:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:507:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:508:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:509:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:510:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:512:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:195:42: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:193:47: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl12 = r6inv*lj3[itype][jtype]*r6inv -
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:337:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:336:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:264:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:260:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:377:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:376:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:304:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:300:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp: In member function 'virtual void LAMMPS_NS::ComputeDilatationAtom::compute_peratom()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp:116:52: warning: 'theta' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (mask[i] & groupbit) dilatation[i] = theta[i];
BUILDSTDERR:                                                     ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:569:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:573:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:574:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:575:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:576:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:577:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:578:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_yieldstress[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:498:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:499:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:500:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:501:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:502:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:423:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:427:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kspring[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:428:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:429:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:430:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp.o
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:551:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:555:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:556:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:557:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:558:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:559:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:560:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_lambdai[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:561:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_taubi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp: In member function 'virtual int LAMMPS_NS::FixQEq::pack_forward_comm(int, int*, double*, int, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp:490:10: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return m;
BUILDSTDERR:           ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp: In member function 'void LAMMPS_NS::FixPOEMS::readfile(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp:987:26: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (me == 0) fclose(fp);
BUILDSTDERR:                           ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp.o
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp: In member function 'virtual void LAMMPS_NS::FixHyperGlobal::pre_reverse(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:307:20: warning: 'r0max' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fbiasr = fbias / r0max / rmax;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:307:34: warning: 'rmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fbiasr = fbias / r0max / rmax;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:228:18: warning: 'jmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,m,imax,jmax;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:228:13: warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,m,imax,jmax;
BUILDSTDERR:              ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp: In member function 'virtual void LAMMPS_NS::FixHyperLocal::pre_reverse(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp:480:27: warning: 'ijhalf' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      maxhalf[iold] = ijhalf;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp: In member function 'virtual void LAMMPS_NS::FixNEB::min_post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:45: warning: 'lenuntilIm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:45: warning: 'idealPos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:58: warning: 'meanDist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist);
BUILDSTDERR:                                                           ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp: In member function 'virtual void LAMMPS_NS::FixEHEX::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp:203:48: warning: 'id_shake' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       fshake = ((FixShake*) modify->fix[id_shake]);
BUILDSTDERR:                                                 ^
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In constructor 'LAMMPS_NS::FixRigid::FixRigid(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:580:51: warning: 'seed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (langflag) random = new RanMars(lmp,seed + me);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:397:30: warning: 'zflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][2] = zflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:396:30: warning: 'yflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][1] = yflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:395:30: warning: 'xflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][0] = xflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:359:34: warning: 'zflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (domain->dimension == 2 && zflag == 1.0)
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:365:30: warning: 'yflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fflag[m-1][1] = yflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:364:30: warning: 'xflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fflag[m-1][0] = xflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:225:32: warning: 'molecule' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (custom_flag) delete [] molecule;
BUILDSTDERR:                                 ^
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1483:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1478:23: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1462:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1406:50: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1405:60: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1405:50: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                   ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1628:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1615:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1577:40: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1 = x[i][1] + ybox*yprd + zbox*yz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1576:50: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1576:40: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                         ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::setup_bodies_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2224:34: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            radone = lbonus[line[i]].length;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::readfile(int, double*, double**, double**, double**, LAMMPS_NS::imageint*, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2297:67: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::setup_bodies_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2123:31: warning: 'inbody' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (infile && inbody[ibody]) continue;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2104:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2021:38: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          orient[i][0] = lbonus[line[i]].theta - theta_body;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2086:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2659:26: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (me == 0) fclose(fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1394:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1389:23: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1374:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1532:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1519:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In constructor 'LAMMPS_NS::FixRigidSmall::FixRigidSmall(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:515:57: warning: 'seed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (langflag) random = new RanMars(lmp,seed + comm->me);
BUILDSTDERR:                                                          ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::setup_bodies_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2380:34: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            radone = lbonus[line[i]].length;
BUILDSTDERR:                                   ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::readfile(int, double**, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2466:67: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer);
BUILDSTDERR:                                                                    ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::setup_bodies_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2264:31: warning: 'inbody' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (infile && inbody[ibody]) continue;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2242:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2157:38: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          orient[i][0] = lbonus[line[i]].theta - theta_body;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2224:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp: In member function 'virtual void LAMMPS_NS::PairSpinDmi::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:539:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:543:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&DM[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:544:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmx[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:545:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmy[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:546:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmz[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:547:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmx[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:548:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmy[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:549:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmz[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:550:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_dmi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp: In member function 'virtual void LAMMPS_NS::PairSpinDmi::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:584:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_dmi_global,sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:585:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:586:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp: In member function 'virtual void LAMMPS_NS::PairSpinExchange::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:506:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:510:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J1_mag[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:511:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:512:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:513:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:514:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_exchange[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp: In member function 'virtual void LAMMPS_NS::PairSpinExchange::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:545:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_exchange_global,sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:546:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:547:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp: In member function 'virtual void LAMMPS_NS::PairSpinMagelec::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:523:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:527:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&ME[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:528:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mex[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:529:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mey[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mez[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:531:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_magelec[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp: In member function 'virtual void LAMMPS_NS::PairSpinMagelec::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:561:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_magelec_global,sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:562:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:563:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp: In member function 'virtual void LAMMPS_NS::PairSpinNeel::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:695:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:699:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:700:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:701:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:702:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:703:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:704:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:705:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:706:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:707:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_neel[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp: In member function 'virtual void LAMMPS_NS::PairSpinNeel::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:741:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_neel_global,sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:742:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:743:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp: In constructor 'LAMMPS_NS::FixWallSRD::FixWallSRD(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp:67:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:477:9: warning: 'ielem' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      int ielem;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:723:53: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (time_guided) schedule_time_guided = endtime - starttime;
BUILDSTDERR:                                                      ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:521:12: note: 'starttime' was declared here
BUILDSTDERR:      double starttime, endtime;
BUILDSTDERR:             ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp: In member function 'void LAMMPS_NS::KimQuery::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:9: warning: variable 'varname' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:19: warning: variable 'function' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:30: warning: unused variable 'value' [-Wunused-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:                               ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::big_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2966:25: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        c1 = tbonus[tri[i]].c1;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2954:30: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        length = lbonus[line[i]].length;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2938:34: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                   ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::big_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3049:30: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        inertia = tbonus[tri[i]].inertia;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3036:40: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        biglist[k].theta = lbonus[line[i]].theta;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3024:34: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp: In member function 'virtual void LAMMPS_NS::FixPythonInvoke::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp:91:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject((PyObject*)pFunc, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp: In member function 'virtual void LAMMPS_NS::FixPythonInvoke::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp:108:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject((PyObject*)pFunc, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::reset_velocities()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1017:33: warning: 'dof_tstat' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        tbin = vbin[i].value[0]/(n-dof_tstat) * tfactor;
BUILDSTDERR:                                  ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:146:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_init, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:164:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_initial_integrate, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::final_integrate()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:182:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_final_integrate, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::initial_integrate_respa(int, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:200:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_initial_integrate_respa, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::final_integrate_respa(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:219:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_final_integrate_respa, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::reset_dt()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:237:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_reset_dt, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::parameterize()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2683:37: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double *c1 = tbonus[tri[i]].c1;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2703:41: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double length = lbonus[line[i]].length;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2700:46: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double *shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                               ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp: In member function 'int LAMMPS_NS::PythonImpl::create_entry(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp:410:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    else if (format && strlen(format) != ninput+noutput)
BUILDSTDERR:                                                ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp: In member function 'virtual void LAMMPS_NS::PythonImpl::invoke_function(int, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp:320:36: warning: 'pValue' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      PyTuple_SetItem(pArgs,i,pValue);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp: In member function 'void LAMMPS_NS::ComputeVoronoi::processCell(voro::voronoicell_neighbor&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:516:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        for (j=0; j<narea.size(); ++j)
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:531:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (neighs != narea.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:548:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          for( j=0; j<vlist.size(); j+=vlist[j]+1 ) {
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:592:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (neighs != narea.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::collisions_multi()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1548:33: warning: 'xbcollfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[2] = xbcollfirst[2];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1547:33: warning: 'xbcollfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[1] = xbcollfirst[1];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1546:33: warning: 'xbcollfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[0] = xbcollfirst[0];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1545:33: warning: 'xscollfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[2] = xscollfirst[2];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1544:33: warning: 'xscollfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[1] = xscollfirst[1];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1543:33: warning: 'xscollfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[0] = xscollfirst[0];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1551:29: warning: 'normfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[2] = normfirst[2];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1550:29: warning: 'normfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[1] = normfirst[1];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1549:29: warning: 'normfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[0] = normfirst[0];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1576:32: warning: 'typefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (collidestyle == SLIP && type == SPHERE)
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1581:33: warning: 'jfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          force_wall(v[i],vsnew,j);
BUILDSTDERR:                                  ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'double LAMMPS_NS::ComputePressureBocs::get_cg_p_corr(double**, int, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:249:10: warning: 'correction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return correction;
BUILDSTDERR:           ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'virtual double LAMMPS_NS::ComputePressureBocs::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:346:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'virtual void LAMMPS_NS::ComputePressureBocs::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:384:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function 'virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:295:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:296:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&Delta[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:297:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:685:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:832:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:837:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_cxst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:839:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:840:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:841:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:842:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:847:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:853:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:859:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:865:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:871:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&AA_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&BB_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:936:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:937:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:938:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:371:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:457:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:462:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa_dh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&qeff_dh_pf[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_dh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_dh_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_dh_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:499:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:831:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:991:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:996:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_cxst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1006:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1012:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1018:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1024:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1030:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst3p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst3p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1107:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:575:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:717:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:722:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:723:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:724:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_ss_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:725:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:726:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_ss_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:727:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:728:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:729:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_sb_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:730:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:731:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_sb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:732:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:733:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:734:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_bb_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:735:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:736:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_bb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:779:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:780:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:781:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:799:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:978:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:983:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:995:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1001:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb2_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1007:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb3_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1013:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1019:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb7_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1025:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb8_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1104:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:833:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:995:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1000:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1012:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1018:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1024:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1030:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1103:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:785:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:950:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:955:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_xst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:965:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:971:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst2_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:977:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst3_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:983:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:989:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst7_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:995:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst8_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1072:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:457:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:461:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:462:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:463:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&power[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:464:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:465:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:466:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&powerT[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:467:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cutT[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:470:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&sc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:474:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&kc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:512:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:513:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:514:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:34: warning: 'dQr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Q[j]    -= ( dQc - dQd + dQr );
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:28: warning: 'dQd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Q[j]    -= ( dQc - dQd + dQr );
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:28: warning: 'dQc' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:352:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:356:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&A_att[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:357:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&B_rep[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:358:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:359:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:360:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_r[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:390:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:391:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:392:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:393:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:400:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:404:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:405:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:406:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&power[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:407:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:408:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cutcc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:410:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&kappa[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:411:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&epsilon[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:412:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&powercc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:448:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:449:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:450:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:451:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:335:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:336:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:337:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&repscale[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:383:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:387:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lj_type[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:388:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:389:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:390:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:420:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:421:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:422:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:423:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:474:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:478:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lj_type[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:479:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:513:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:514:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp: In function 'void write_group(FILE*, int, LAMMPS_NS::Atom*, LAMMPS_NS::Group*, int, int, int, FILE*, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp:133:25: warning: 'recvlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (num > 0) delete[] recvlist;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp: In member function 'virtual void LAMMPS_NS::FixColvars::setup(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp:543:33: warning: unused variable 'id' [-Wunused-variable]
BUILDSTDERR:      std::vector<int>           &id = *(proxy->modify_atom_ids());
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp: In member function 'void LAMMPS_NS::Group2Ndx::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp:167:80: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        write_group(fp,gid,atom,group,comm->me,comm->nprocs,world,screen,logfile);
BUILDSTDERR:                                                                                 ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp: In member function 'void LAMMPS_NS::Ndx2Group::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp:130:37: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          name = find_section(fp,NULL);
BUILDSTDERR:                                      ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:216:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:218:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:219:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:225:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:235:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:237:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp: In member function 'void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:435:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:437:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:438:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:444:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:472:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:474:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.h:17:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp: In member function 'virtual void LAMMPS_NS::FixRX::post_constructor()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pointers.h:35:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MAX(A,B) ((A) > (B) ? (A) : (B))
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:324:24: note: in expansion of macro 'MAX'
BUILDSTDERR:          tmpmaxstrlen = MAX(tmpmaxstrlen,strlen(word));
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp: In member function 'void LAMMPS_NS::FixRX::initSparse()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:549:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (sparseKinetics_inu[i][idx] >= nu_bin.size())
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:567:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (sparseKinetics_inu[i][idx] >= nu_bin.size())
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:583:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 1; i < nu_bin.size(); ++i)
BUILDSTDERR:                                      ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtonSSA::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:209:54: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                         tag[j]-tagprev);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:207:68: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:207:52: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                     ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:319:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:381:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:385:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:386:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:387:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:416:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:417:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:418:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:419:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:412:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:482:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:486:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:519:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:973:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:977:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1003:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1004:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1005:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1006:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:365:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:367:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:368:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:374:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:387:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:389:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:708:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:709:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:510:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:512:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:513:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:519:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:532:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:534:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:853:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:854:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'void LAMMPS_NS::PairExp6rx::getMixingWeights(int, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&) const':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1223:32: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1237:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1216:32: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1230:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1223:5: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1237:5: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1216:5: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1230:5: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:177:24: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          f[i][2] += delz*fpair;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:189:52: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (rho[i]*rho[i] < tb->innersq || rho[j]*rho[j] < tb->innersq)
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp: In member function 'void LAMMPS_NS::PairTableRX::getMixingWeights(int, double&, double&, double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:579:29: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = nMolecules2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:578:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = nMoleculesOld2;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:574:27: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = fraction2;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:573:33: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = fractionOld2;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:577:29: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = nMolecules1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:576:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = nMoleculesOld1;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:572:27: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = fraction1;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:571:33: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = fractionOld1;
BUILDSTDERR:                                  ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::getMixingWeights(int, double&, double&, double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1015:29: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = nMolecules2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1014:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = nMoleculesOld2;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1010:27: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = fraction2;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1009:33: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = fractionOld2;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1013:29: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = nMolecules1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1012:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = nMoleculesOld1;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1008:27: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = fraction1;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1007:33: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = fractionOld1;
BUILDSTDERR:                                  ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp: In member function 'int LAMMPS_NS::FixDrudeTransform<inverse>::pack_forward_comm(int, int*, double*, int, int*) [with bool inverse = false]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp:293:13: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              buf[m++] = x[j][2] + dz;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp: In member function 'int LAMMPS_NS::FixDrudeTransform<inverse>::pack_forward_comm(int, int*, double*, int, int*) [with bool inverse = true]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp:293:13: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:363:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:498:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&polar[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&thole[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:503:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:539:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&thole_global,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutTholeLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:671:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:664:78: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (drudetype[type[i]] != NOPOL_TYPE && drudetype[type[j]] != NOPOL_TYPE &&
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:666:27: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul += factor_e * dcoul;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:666:27: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:660:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:660:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:663:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:658:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:229:50: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  drudetype[type[j]] != NOPOL_TYPE && j != di_closest){
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:230:33: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:193:30: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:230:33: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:222:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:227:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:224:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:235:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:225:25: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:224:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:315:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:319:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&polar[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:320:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&thole[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:321:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:351:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&thole_global,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:352:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:353:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:354:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp.o
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:969:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:972:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:996:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:997:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:998:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:276:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:280:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:281:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:310:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:311:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:313:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:314:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:315:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairCoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:363:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                 ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:300:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:304:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:331:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:332:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:334:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:335:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:336:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:375:82: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:376:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:841:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:845:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:846:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:884:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:885:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:889:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:384:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:388:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:389:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:390:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:391:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:392:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:427:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:428:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:429:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:431:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:432:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:433:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:434:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:435:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:500:37: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (2.0/(denlj*sqrt(denlj)) - 3.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:495:78: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e *lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:143:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:982:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:974:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:975:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:528:71: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:44: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:550:66: warning: 'fprefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:58: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:53: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:77:10: warning: unused variable 'fraction' [-Wunused-variable]
BUILDSTDERR:    double fraction;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:493:10: warning: unused variable 'fraction' [-Wunused-variable]
BUILDSTDERR:    double fraction,forcecoul,forcelj,phicoul,philj;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:401:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:405:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:406:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:188:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:181:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:182:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:407:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:408:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:442:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:443:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:444:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:446:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:447:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:448:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:449:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:450:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:524:37: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (2.0/(denlj*sqrt(denlj)) - 3.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:518:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:517:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:160:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:161:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2Soft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:323:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:327:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:328:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:329:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:330:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2Soft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:362:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:363:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:364:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:365:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:366:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:367:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:380:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:384:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:423:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:427:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:497:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:492:79: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:148:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:144:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                                 ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:797:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:801:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:802:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:838:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:839:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:843:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:658:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:662:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:663:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:664:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:665:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:928:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:920:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:921:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:698:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:699:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:701:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:702:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:703:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:704:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:756:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:524:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:530:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:493:71: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:44: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:510:66: warning: 'fprefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:58: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:53: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:396:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:395:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:323:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:319:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:176:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:169:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:170:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:413:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:316:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:320:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:321:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:322:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:323:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:324:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp.o
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:461:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:462:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:463:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:464:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:465:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:364:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:363:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:291:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:287:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp:63:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for( int i = 0; i < parts.size(); ++i ){
BUILDSTDERR:                                     ^
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp: In constructor 'LAMMPS_NS::MEAM::MEAM(LAMMPS_NS::Memory*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp:46:156: warning: operation on '((LAMMPS_NS::MEAM*)this)->LAMMPS_NS::MEAM::Ec_meam[i][j]' may be undefined [-Wsequence-point]
BUILDSTDERR:        Ec_meam[i][j] = re_meam[i][j] = alpha_meam[i][j] = delta_meam[i][j] = Ec_meam[i][j] = ebound_meam[i][j] = attrac_meam[i][j] = repuls_meam[i][j] = 0.0;
BUILDSTDERR:                                                                                                                                                             ^
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp: In member function 'double LAMMPS_NS::MEAM::phi_meam(double, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp:446:21: warning: 'rho0_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rhobar2 = rho02 / rho_bkgd2 * G2;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp:445:21: warning: 'rho0_1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rhobar1 = rho01 / rho_bkgd1 * G1;
BUILDSTDERR:                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp.o
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:394:13: warning: variable 'dp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:     double f,dp;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:375:18: warning: variable 'alm' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   double alp = al,alm = al;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:158:19: warning: variable 'dr' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x0,x1,dx,dr;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:187:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:203:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:246:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:306:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:329:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:331:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:334:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:343:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:345:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:358:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:109:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:119:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:123:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp: In member function 'void LAMMPS_NS::PairMEAMC::read_files(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp:589:69: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      meam_inst->meam_setup_param(which,value,nindex,index,&errorflag);
BUILDSTDERR:                                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::compute_x(const int*, const int* const*, double*, double*, double*, double*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:24: warning: unused variable 'mx' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:27: warning: unused variable 'itag' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:32: warning: unused variable 'jtag' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:10: warning: unused variable 'nbc' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:20: warning: unused variable 'tbl' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:                     ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:30: warning: unused variable 'tbm' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:                               ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:600:13: warning: unused variable 'lmax_local' [-Wunused-variable]
BUILDSTDERR:    const int lmax_local = lmax;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:609:10: warning: variable 't0' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double t0,t1;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:609:13: warning: variable 't1' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double t0,t1;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:618:18: warning: unused variable 'tsort' [-Wunused-variable]
BUILDSTDERR:    double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:618:42: warning: unused variable 'tlookup' [-Wunused-variable]
BUILDSTDERR:    double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:620:10: warning: unused variable 'ntsort' [-Wunused-variable]
BUILDSTDERR:    double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:620:36: warning: unused variable 'ntlookup' [-Wunused-variable]
BUILDSTDERR:    double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'virtual void LAMMPS_NS::PairMGPT::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:1838:9: warning: variable 'volpres_tag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      int volpres_tag = 0,precision_tag = 0,nbody_tag = 0;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:1838:25: warning: variable 'precision_tag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      int volpres_tag = 0,precision_tag = 0,nbody_tag = 0;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::hamltn_5_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::hamltn_7_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:227:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:228:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&kcost[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:229:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&ksint[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:230:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&theta[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:259:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&umin[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:260:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&a[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:261:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&cost[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:262:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&sint[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:263:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp:208:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp:209:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamma0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:234:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:235:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:236:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:237:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:240:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:241:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:242:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&N[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:235:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:236:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:237:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:238:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:180:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:181:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:182:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:182:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp: In member function 'virtual double LAMMPS_NS::ComputePressureGrem::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp:97:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:329:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:330:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                             ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:370:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:385:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(k[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:386:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(multiplicity[i],sizeof(int),nterms[i],fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:387:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp:322:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp:332:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(a[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp:329:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp:330:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:761:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:781:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(Ccoeff[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:782:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:783:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:784:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:785:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:786:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:787:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:788:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:789:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:790:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:576:13: warning: 'void tr_count(const double*, const double*, double*, const double*, double*, const double*, double*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void tr_count(const double * restrict A,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp:1026:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp:1027:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp: In member function 'virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp:1019:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp:1020:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp:506:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::read(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:2763:22: warning: variable 'edgeflag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int equivflag = 0, edgeflag = 0, bondflag = 0, customedgesflag = 0;
BUILDSTDERR:                       ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::dedup_mega_gloves(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1836:27: warning: 'dedup_size' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (int i = dedup_size-1; i > 0; --i) { //dedup_size
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::limit_bond(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1997:79: warning: 'i_statted_tags' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (stabilization_flag == 1) i_statted_tags[atom->map(temp_limit_glove[i])] = 0;
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1974:15: warning: 'temp_limit_glove' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      delete [] temp_limit_glove;
BUILDSTDERR:                ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::unlimit_bond()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:2032:57: warning: 'i_statted_tags' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (stabilization_flag == 1) i_statted_tags[i] = 1;
BUILDSTDERR:                                                          ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:123:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:124:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:128:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:129:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:133:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:134:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:138:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:144:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:148:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:149:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:153:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:154:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:158:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:159:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:163:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:164:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:169:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:173:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:174:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:178:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:179:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:183:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:184:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:188:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:189:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:193:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:194:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:198:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:199:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:203:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:204:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:208:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:209:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:213:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:214:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:218:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:219:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:223:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:224:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:228:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:229:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp:306:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp:307:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp:252:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp:253:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:331:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:332:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:333:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:334:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:335:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&all[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp:331:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp:332:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:308:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:312:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:313:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:314:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:315:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:344:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:345:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:346:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:347:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp: In member function 'virtual void LAMMPS_NS::PairAGNI::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (evflag) ev_tally_xyz_full(i,0.0,0.0,fxtmp,fytmp,fztmp,delx,dely,delz);
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp: In member function 'void LAMMPS_NS::PairAGNI::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:462:70: warning: 'wantdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      } else if (params && (wantdata >=0) && (nwords == params[wantdata].numeta+3)) {
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:432:26: warning: 'curparam' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      } else if ((curparam >=0) && (nwords == 1) && (strcmp(words[0],"endVar") == 0)) {
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:304:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmae[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:305:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:331:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:332:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:333:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:287:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rme[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:288:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmae[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:289:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:316:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:317:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:318:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp: In member function 'void LAMMPS_NS::PairE3B::presetParam(int, bool&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp:619:17: warning: 'lconv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bondL *= lconv*BOND_DELTA;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp:613:14: warning: 'econv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    e2 *= econv;
BUILDSTDERR:               ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:308:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:312:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&hgauss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:313:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rmh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:314:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmah[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:315:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:344:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:345:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:346:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:307:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:311:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&aparm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:312:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bparm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:313:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:314:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:341:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:833:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:837:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:838:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:872:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:873:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:315:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:319:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:320:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:321:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:322:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:349:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJExpandCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:969:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:961:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:961:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:964:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:959:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:489:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:493:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&scale[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:526:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:531:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:561:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:558:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:280:25: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:279:18: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rsq*rcutlj2inv+
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:37: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:270:38: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:29: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:45: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:270:46: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:37: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:49: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:29: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:277:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:                           ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:444:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:450:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:480:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:644:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:647:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:653:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:660:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:664:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:188:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:193:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:197:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:190:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:190:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual double LAMMPS_NS::PairLJSFDipoleSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:625:17: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:624:10: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        rsq*rcutlj2inv+
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:622:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:29: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:615:30: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:21: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:21: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:37: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:615:38: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:473:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:605:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:611:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:617:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:621:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(line, MAXLINE, fp);
BUILDSTDERR:                                          ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:311:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:315:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:316:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:317:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:318:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:319:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rr[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:320:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:352:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:353:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sscale,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:354:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dscale,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:355:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:356:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:277:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:281:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:282:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:283:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:284:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:311:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:312:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:699:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:704:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:705:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:733:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:734:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bptype,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:735:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&btype,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:736:33: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&min,sizeof(int),1,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:737:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&midpoint,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:738:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&exclude,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:388:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:389:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:390:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:391:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:392:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k5[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:393:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k6[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:395:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:396:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:397:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:399:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:400:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:401:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:402:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:336:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&th0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:180:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:165:33: warning: 'r32inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fpair = forcebuck6d * r32inv;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp:319:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:419:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:423:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha_ij[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:461:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&vdwl_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:452:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:456:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha_ij[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:495:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&vdwl_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&coul_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:193:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] -
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:195:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:188:51: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairBuck6dCoulGaussDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:558:63: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   rsq*f_shift_ij[itype][jtype]);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:557:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] -
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:552:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck6d = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairBuck6dCoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:71: warning: 'ealpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:66: warning: 'erfa' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:608:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck6d = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:72: warning: 'erfa' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:77: warning: 'ealpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:207:51: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp: In member function 'void LAMMPS_NS::FixPhonon::GaussJordan(int, std::complex<double>*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp:788:14: warning: 'irow' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,icol,irow,j,k,l,ll,idr,idc;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp:827:22: warning: 'icol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      idr = icol*n+icol;
BUILDSTDERR:                       ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp: In function 'int get_neighbours(void*, size_t, size_t, int, size_t*, int32_t*, double (*)[3])':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp:191:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (atom_index < data->nlocal) {
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp:205:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (j == atom_index)
BUILDSTDERR:               ^
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReax::pertype_parameters(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp:219:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(pf,"%d %lg %lg %lg",&itype,&v1,&v2,&v3);
BUILDSTDERR:                                                      ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReax::pre_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp:513:22: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      qeq_time = t_end - t_start;
BUILDSTDERR:                       ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp: In member function 'virtual void LAMMPS_NS::PairReaxC::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp:543:31: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      data->timing.nbrs = t_end - t_start;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp: In function 'char Read_Control_File(char*, control_params*, output_controls*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp:119:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp: In function 'char Read_Force_Field(FILE*, reax_interaction*, control_params*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:54:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:57:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:76:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:88:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:93:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:94:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:95:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:148:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:174:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:193:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:212:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:232:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( s, MAX_LINE, fp );
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:317:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:327:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:331:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:358:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAX_LINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:479:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:484:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:540:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:545:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:598:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:603:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:669:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:679:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Tridiagonal_Solve(const double*, const double*, double*, double*, double*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:40:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for(i = 1; i < n; i++){
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Natural_Cubic_Spline(LAMMPS_NS::Error*, const double*, const double*, cubic_spline_coef*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:67:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 2; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:71:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:75:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-2; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:79:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:86:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i ){
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Complete_Cubic_Spline(LAMMPS_NS::Error*, const double*, const double*, double, double, cubic_spline_coef*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:117:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:121:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:125:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 0; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:130:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:135:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i ){
BUILDSTDERR:                    ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp: In member function 'void LAMMPS_NS::FixRigidMeso::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:337:50: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:336:60: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:336:50: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp: In member function 'void LAMMPS_NS::FixRigidMeso::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:457:40: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1 = x[i][1] + ybox*yprd + zbox*yz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:456:50: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:456:40: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                         ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp: In member function 'virtual void LAMMPS_NS::FixMesoMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:709:61: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:678:61: warning: 'dy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:647:61: warning: 'dx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx;
BUILDSTDERR:                                                              ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:435:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:438:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:489:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);  if (verbose) printf ("%s",ptr);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:493:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:501:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:510:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:528:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:542:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:565:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);  if (verbose) printf ("%s",ptr);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:568:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:621:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:633:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:655:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:668:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:675:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:695:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:698:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:708:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:719:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:722:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:727:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:735:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:738:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:745:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:748:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:758:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:761:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:766:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:792:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:795:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:803:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:813:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp: In constructor 'LAMMPS_NS::FixMesoMove::FixMesoMove(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:174:24: warning: 'iarg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (strcmp(arg[iarg],"units") == 0) {
BUILDSTDERR:                         ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:694:3: warning: 'test' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (test == 0) {
BUILDSTDERR:    ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'void LAMMPS_NS::PairSMTBQ::tabqeq()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:1458:70: warning: 'bCoeff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:1458:37: warning: 'aCoeff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r);
BUILDSTDERR:                                      ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'void LAMMPS_NS::PairSMTBQ::Charge()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:2594:61: warning: 'gp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      QOxInit=max(QOxInit, -0.98* params[1].qform *nQEqcall[gp]/nQEqaall[gp])   ;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:2813:24: warning: 't_init' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      dt = t_end - t_init;
BUILDSTDERR:                         ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp: In member function 'virtual void LAMMPS_NS::ComputePressureUef::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp:141:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp.o
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp: In member function 'virtual void LAMMPS_NS::AngleCross::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:282:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kss[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:283:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kbs0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:284:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kbs1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:285:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r00[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:286:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r01[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:287:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp: In member function 'virtual void LAMMPS_NS::AngleMM3::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp:229:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp:230:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp: In member function 'virtual void LAMMPS_NS::BondMM3::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp:182:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp:183:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistHarm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp:261:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp:262:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp: In member function 'virtual void LAMMPS_NS::ImproperSQDistHarm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp:261:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp:262:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:525:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:529:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:531:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:532:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:565:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:566:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:567:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&truncw,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:568:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:569:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:570:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:571:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:572:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:525:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:529:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:531:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:532:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:565:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:566:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:567:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&truncw,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:568:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:569:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:570:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:571:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:572:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJSwitch3CoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:660:19: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      forcelj = expb*lj1[itype][jtype]*r-6.0*lj4[itype][jtype]*r6inv;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:694:36: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    fforce = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:677:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:668:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:668:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:671:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:666:32: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc1;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:684:7: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:        ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairMM3Switch3CoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:679:17: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:695:36: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    fforce = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:679:35: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:670:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:670:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:673:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:668:32: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc1;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:685:7: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:195:30: warning: 'erfc2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:186:36: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc1;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:195:30: warning: 'prefactor2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:191:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:213:41: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:196:24: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:203:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:188:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:188:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:199:23: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:198:30: warning: 'erfc2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:189:36: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc1;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:198:30: warning: 'prefactor2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:194:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:215:41: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:199:41: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:205:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:191:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:191:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp.o
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp.o
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp: In member function 'void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp:140:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type];
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp: In member function 'void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp:144:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type];
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp: In member function 'void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp:140:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp: In member function 'void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp:144:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp: In member function 'void LAMMPS_NS::BondQuarticOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp:152:26: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (rsq < TWO_1_3) ebond += 4.0*sr6*(sr6-1.0) + 1.0;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp: In member function 'void LAMMPS_NS::BondQuarticOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp:152:26: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp.o
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp.o
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReaxOMP::pre_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp:351:22: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      qeq_time = t_end - t_start;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:235:7: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:        ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:235:7: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:        ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:50:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:49:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:49:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:120:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:118:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:51:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:118:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:51:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:122:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:120:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:50:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:120:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:50:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:114:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:112:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:51:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:112:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:51:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:51:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:51:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:118:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:116:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:50:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:116:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:50:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:127:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:125:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:54:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:125:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:54:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:120:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:149:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:50:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:149:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:50:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:124:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:50:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:122:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:49:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:122:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:49:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:125:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:123:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:123:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:121:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:156:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:50:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:156:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:50:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:114:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:53:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:112:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:52:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:112:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:52:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:134:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:132:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:132:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:122:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:56:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:120:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:55:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:120:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:55:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:132:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:130:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,which,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:130:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,which,imol,iatom;
BUILDSTDERR:                                          ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:149:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:56:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:147:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:147:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:166:55: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:191:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:58:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:95:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:192:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:190:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:151:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:193:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:193:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:167:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:237:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:57:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:94:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:238:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:236:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:156:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:154:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:154:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:173:55: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:198:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:57:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:94:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:81:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:146:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:57:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:144:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:47: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:144:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:42: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:161:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:33: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:185:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:59:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:98:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:186:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:184:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:164:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:58:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:162:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:57: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:162:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:52: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:180:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:43: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:204:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:60:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:99:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:205:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:203:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:177:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:177:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp: In member function 'void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:147:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = epsilon[itype][jtype]*
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:145:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp: In member function 'void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:147:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = epsilon[itype][jtype]*
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:145:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:157:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:154:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv;
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:157:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:154:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv;
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:160:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:160:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:181:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:174:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:180:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:181:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:174:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:180:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp: In member function 'void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:147:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp: In member function 'void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:147:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp: In member function 'void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a * tb->e[itable] + b * tb->e[itable+1] +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:185:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp: In member function 'void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a * tb->e[itable] + b * tb->e[itable+1] +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:185:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp: In member function 'void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t *
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp: In member function 'void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:170:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:171:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:170:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:171:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:211:19: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR,
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fztmp += delz*fpair;
BUILDSTDERR:        ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:211:19: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR,
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fztmp += delz*fpair;
BUILDSTDERR:        ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:252:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:259:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:252:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:259:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:179:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:179:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:174:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:169:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:174:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:169:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:186:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:191:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:195:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:186:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:191:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:195:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:186:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:181:15: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:190:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:186:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:181:15: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:190:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:461:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:466:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:461:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:466:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:415:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:411:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:438:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:443:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:438:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:443:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:415:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:411:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_inner(int, int, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1335:28: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1331:28: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1304:28: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1300:28: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_middle(int, int, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1597:28: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1593:28: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1566:28: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1562:28: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp: In member function 'void LAMMPS_NS::PairAIREBOOMP::TORSION_thr(int, int, int, int, double*, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:999:77: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ev_tally4_thr(this,i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl,thr);
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp: In member function 'void LAMMPS_NS::PairAIREBOOMP::FLJ_thr(int, int, int, int, int, double*, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:569:21: warning: 'dwij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair = dC*dwij / rij;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:32: warning: 'dwmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:33: warning: 'wmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:27: warning: 'dwkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:27: warning: 'wkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:584:27: warning: 'dwkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:580:28: warning: 'wkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkjS / rikS;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:603:22: warning: 'dwikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:22: warning: 'wikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:45: warning: 'rmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:45: warning: 'rkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:584:40: warning: 'rkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:603:45: warning: 'rikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:639:84: warning: 'atomm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              v_tally4_thr(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS,thr);
BUILDSTDERR:                                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:639:84: warning: 'atomk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:167:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:187:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:200:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair += D_i * rhojp * t1;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:167:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:189:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:205:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:404:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:400:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:375:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:371:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:243:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (drudetype[type[i]] != NOPOL_TYPE &&
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:240:15: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:237:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:242:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:250:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:243:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (drudetype[type[i]] != NOPOL_TYPE &&
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:240:15: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:237:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:242:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:250:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:157:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:154:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:157:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:154:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:179:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:173:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:179:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:173:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp: In member function 'void LAMMPS_NS::PairAGNIOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (EVFLAG) ev_tally_xyz_full_thr(this,i,0.0,0.0,
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:419:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:415:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:390:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:386:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp: In member function 'virtual void LAMMPS_NS::PairReaxCOMP::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp:226:31: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      data->timing.nbrs = t_end - t_start;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp: In function 'int Init_ListsOMP(reax_system*, control_params*, simulation_data*, storage*, reax_list**, mpi_datatypes*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp:56:12: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    MPI_Comm comm;
BUILDSTDERR:             ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  ecoul = prefactor*erfc;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:17: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:40: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  ecoul = prefactor*erfc;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:17: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:40: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:409:23: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:405:23: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:432:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:437:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:432:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:437:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:409:23: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:405:23: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp: In member function 'void LAMMPS_NS::PairBeckGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp:240:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp: In member function 'void LAMMPS_NS::PairBornGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp:242:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:281:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:278:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:278:72: warning: 'v_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:282:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp:237:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp:249:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp:249:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp: In member function 'void LAMMPS_NS::PairDPDGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp:405:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp: In member function 'void LAMMPS_NS::PairGaussGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp:230:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJ96CutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp:226:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCubicGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:234:40: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:231:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:238:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp:236:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp:248:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:252:72: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:252:54: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:255:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:282:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:269:28: warning: 'forcecoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:276:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:282:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp: In member function 'void LAMMPS_NS::PairLJExpandGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp:239:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp: In member function 'void LAMMPS_NS::PairLJGromacsGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp:235:71: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp:241:74: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairMIECutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp:225:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp: In member function 'void LAMMPS_NS::PairMorseGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp:221:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp: In member function 'void LAMMPS_NS::PairSoftGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp:232:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp: In member function 'void LAMMPS_NS::PairTableGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:333:49: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:333:22: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:330:45: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:338:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp: In member function 'void LAMMPS_NS::PairUFMGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp:235:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp: In member function 'void LAMMPS_NS::PairYukawaGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp:224:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp: In member function 'void LAMMPS_NS::PairZBLGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp:232:59: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp:237:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp: In member function 'void LAMMPS_NS::PairGayBerneGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp:335:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp:338:63: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                        -r12[0],-r12[1],-r12[2]);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp: In member function 'void LAMMPS_NS::PairRESquaredGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp:310:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp:313:73: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                        fforce[2],-r12[0],-r12[1],-r12[2]);
BUILDSTDERR:                                                                          ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp: In member function 'void LAMMPS_NS::PairLJClass2GPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp:223:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:272:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:273:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:276:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:276:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp: In member function 'void LAMMPS_NS::PairColloidGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp:302:22: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        f[i][2] += delz*fpair;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp:298:36: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (eflag) evdwl *= factor_lj;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp: In member function 'void LAMMPS_NS::PairYukawaColloidGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp:235:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:325:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:326:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:330:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:329:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:284:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:281:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:281:72: warning: 'v_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:285:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairCoulLongCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:306:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:311:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:308:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:308:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:353:34: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:351:35: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:349:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:349:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:353:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:358:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:70: warning: 'd2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:62: warning: 'd1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:54: warning: 'd0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:47: warning: 'b2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:39: warning: 'b1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:31: warning: 'b0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:70: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:62: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:54: warning: 'g0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:417:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:282:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:287:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:286:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:274:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:275:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:279:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:279:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:281:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:286:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:283:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:283:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:317:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:322:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:326:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:319:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:319:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:326:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:305:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:310:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:314:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:307:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:307:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:278:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:287:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:280:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:293:70: warning: 'ecoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,ecoul,fpair,delx,dely,delz);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:293:70: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:280:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:376:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:377:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:378:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:379:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:404:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:426:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp:433:55: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (me == 0) grab(fptr,file->nr,&file->rhor[i][1]);
BUILDSTDERR:                                                        ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:442:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJExpandCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:311:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:316:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:320:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:313:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:313:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:388:25: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:387:18: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rsq*rcutlj2inv +
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:35: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:378:36: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv * pqfac * pidotr;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:29: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:43: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:378:44: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv * pqfac * pidotr;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:37: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:49: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:385:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) +
BUILDSTDERR:                           ^
[100%] Linking CXX shared library liblammps.so
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/lammps.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -Wl,-z,relro -shared -Wl,-soname,liblammps.so.0 -o liblammps.so.0 @CMakeFiles/lammps.dir/objects1.rsp libmpi_stubs.a -lfftw3 -lpython3.6m -ljpeg -lpng -lz -lvoro++ -lkim-api libcsnompi.a -lm libpoems.a libatc.a libcolvars.a libh5md.a libgpu.a -lopenblas -lhdf5 -lsz -lz -ldl -lm -lOpenCL 
/usr/bin/cmake3 -E cmake_symlink_library liblammps.so.0 liblammps.so.0 liblammps.so
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[100%] Built target lammps
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/lmp.dir/DependInfo.cmake --color=
Scanning dependencies of target lmp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[100%] Building CXX object CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp
[100%] Linking CXX executable lmp
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro -rdynamic CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o  -o lmp -Wl,-rpath,/builddir/build/BUILD/lammps-stable_5Jun2019/serial: liblammps.so.0 libmpi_stubs.a -lfftw3 -lpython3.6m -ljpeg -lpng -lvoro++ -lkim-api libcsnompi.a -lm libpoems.a libatc.a -lopenblas libcolvars.a libh5md.a -lhdf5 -lsz -lz -ldl -lm libgpu.a -lOpenCL 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[100%] Built target lmp
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles 0
+ popd
~/build/BUILD/lammps-stable_5Jun2019
+ test -n ''
+ for mpi in ''\'''\''' mpich openmpi
+ test -n mpich
+ module load mpi/mpich-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh load mpi/mpich-aarch64
+ eval LD_LIBRARY_PATH=/usr/lib64/mpich/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/mpich-aarch64' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/mpich:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/mpich/bin' ';export' 'MPI_BIN;MPI_COMPILER=mpich-aarch64' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich-aarch64' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/mpich' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/mpich-aarch64' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/mpich/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/mpich' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_mpich' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/mpich-aarch64' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:/usr/lib64/pkgconfig:/usr/share/pkgconfig' ';export' 'PKG_CONFIG_PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/mpich' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/mpich-aarch64' ';export' '_LMFILES_;'
BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
BUILDSTDERR: ++ export LD_LIBRARY_PATH
BUILDSTDERR: ++ LOADEDMODULES=mpi/mpich-aarch64
BUILDSTDERR: ++ export LOADEDMODULES
BUILDSTDERR: ++ MANPATH=/usr/share/man/mpich:/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ MPI_BIN=/usr/lib64/mpich/bin
BUILDSTDERR: ++ export MPI_BIN
BUILDSTDERR: ++ MPI_COMPILER=mpich-aarch64
BUILDSTDERR: ++ export MPI_COMPILER
BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich-aarch64
BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ MPI_HOME=/usr/lib64/mpich
BUILDSTDERR: ++ export MPI_HOME
BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/mpich-aarch64
BUILDSTDERR: ++ export MPI_INCLUDE
BUILDSTDERR: ++ MPI_LIB=/usr/lib64/mpich/lib
BUILDSTDERR: ++ export MPI_LIB
BUILDSTDERR: ++ MPI_MAN=/usr/share/man/mpich
BUILDSTDERR: ++ export MPI_MAN
BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich
BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ MPI_SUFFIX=_mpich
BUILDSTDERR: ++ export MPI_SUFFIX
BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/mpich-aarch64
BUILDSTDERR: ++ export MPI_SYSCONFIG
BUILDSTDERR: ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:/usr/lib64/pkgconfig:/usr/share/pkgconfig
BUILDSTDERR: ++ export PKG_CONFIG_PATH
BUILDSTDERR: ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/mpich
BUILDSTDERR: ++ export PYTHONPATH
BUILDSTDERR: ++ _LMFILES_=/etc/modulefiles/mpi/mpich-aarch64
BUILDSTDERR: ++ export _LMFILES_
+ mkdir -p mpich
~/build/BUILD/lammps-stable_5Jun2019/mpich ~/build/BUILD/lammps-stable_5Jun2019
+ pushd mpich
+ cp -al ../lammps-testing-827be7af84ca100d394ea1cf6d3bc49f6a8eef92 tests/
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  '
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  '
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
BUILDSTDERR: ++ test -n mpich
BUILDSTDERR: ++ echo -DBUILD_MPI=OFF -DPKG_MPIIO=OFF
+ /usr/bin/cmake3 -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake -DBUILD_LIB=ON -DPKG_PYTHON=ON -DPKG_VORONOI=ON -DPKG_USER-ATC=ON -DPKG_USER-H5MD=ON -DPKG_KIM=ON -DENABLE_TESTING=ON -DPYTHON_INSTDIR=/usr/lib/python3.6/site-packages -DCMAKE_INSTALL_SYSCONFDIR=/etc -DPKG_GPU=ON -DGPU_API=OpenCL -DBUILD_OMP=ON -DFFT=FFTW3 -DPKG_USER-INTEL=OFF -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DLAMMPS_MACHINE=mpich -DLAMMPS_LIB_SUFFIX=mpich -DCMAKE_INSTALL_MANDIR=/usr/share/man/mpich -DBUILD_MPI=ON -DPKG_MPIIO=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags' '-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags' -DBUILD_MPI=OFF -DPKG_MPIIO=OFF -DLAMMPS_TESTING_SOURCE_DIR=/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/tests ../cmake
loading initial cache file ../cmake/presets/all_on.cmake
loading initial cache file ../cmake/presets/nolib.cmake
-- The CXX compiler identification is GNU 4.8.5
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Running check for auto-generated files from make-based build system
-- The C compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Running test discovery...
-- Found 53 tests.
-- Found OpenMP_C: -fopenmp (found version "3.1") 
-- Found OpenMP_CXX: -fopenmp (found version "3.1") 
-- Found OpenMP: TRUE (found version "3.1")  
-- Looking for C++ include omp.h
-- Looking for C++ include omp.h - found
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") 
-- Checking for module 'fftw3'
--   Found fftw3, version 3.3.3
-- Found FFTW3: /usr/lib64/libfftw3.so  
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libopenblas.so  
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found PythonLibs: /usr/lib64/libpython3.6m.so (found version "3.6.8") 
-- Found JPEG: /usr/lib64/libjpeg.so (found version "62") 
-- Found PNG: /usr/lib64/libpng.so (found version "1.5.13") 
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") 
-- Found GZIP: /usr/bin/gzip  
-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) 
-- Found VORO: /usr/lib64/libvoro++.so  
-- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) 
-- Checking for module 'libkim-api>=2.0'
--   Found libkim-api, version 2.0.2
-- Found KIM-API: kim-api  
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.12")  
-- Looking for CL_VERSION_2_2
-- Looking for CL_VERSION_2_2 - found
-- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") 
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/atom_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/beck_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/born_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/born_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/born_coul_long_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/born_coul_wolf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/born_coul_wolf_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/buck_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/buck_coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/buck_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/charmm_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/colloid_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/coul_debye_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/coul_dsf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/coul_long_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/device_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/dipole_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/dipole_lj_sf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/dipole_long_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/dpd_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/eam_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/ellipsoid_nbor_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/gauss_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj96_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_class2_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_coul_debye_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_coul_msm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_cubic_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_dsf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_expand_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_expand_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_gromacs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_sdk_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/lj_sdk_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/mie_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/morse_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/neighbor_cpu_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/neighbor_gpu_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/pppm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/soft_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/sw_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/table_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/ufm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/vashishta_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/yukawa_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/yukawa_colloid_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/zbl_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/gayberne_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/gayberne_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/re_squared_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/re_squared_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/tersoff_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/tersoff_zbl_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu/tersoff_mod_cl.h...
-- Generating style_angle.h...
-- Generating style_atom.h...
-- Generating style_body.h...
-- Generating style_bond.h...
-- Generating style_command.h...
-- Generating style_compute.h...
-- Generating style_dihedral.h...
-- Generating style_dump.h...
-- Generating style_fix.h...
-- Generating style_improper.h...
-- Generating style_integrate.h...
-- Generating style_kspace.h...
-- Generating style_minimize.h...
-- Generating style_nbin.h...
-- Generating style_npair.h...
-- Generating style_nstencil.h...
-- Generating style_ntopo.h...
-- Generating style_pair.h...
-- Generating style_reader.h...
-- Generating style_region.h...
-- Generating packages_angle.h...
-- Generating packages_atom.h...
-- Generating packages_body.h...
-- Generating packages_bond.h...
-- Generating packages_command.h...
-- Generating packages_compute.h...
-- Generating packages_dihedral.h...
-- Generating packages_dump.h...
-- Generating packages_fix.h...
-- Generating packages_improper.h...
-- Generating packages_integrate.h...
-- Generating packages_kspace.h...
-- Generating packages_minimize.h...
-- Generating packages_nbin.h...
-- Generating packages_npair.h...
-- Generating packages_nstencil.h...
-- Generating packages_ntopo.h...
-- Generating packages_pair.h...
-- Generating packages_reader.h...
-- Generating packages_region.h...
-- Generating lmpinstalledpkgs.h...
-- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.8") 
-- Building package: ASPHERE
-- Building package: BODY
-- Building package: CLASS2
-- Building package: COLLOID
-- Building package: CORESHELL
-- Building package: DIPOLE
-- Building package: GRANULAR
-- Building package: KSPACE
-- Building package: MANYBODY
-- Building package: MC
-- Building package: MESSAGE
-- Building package: MISC
-- Building package: MOLECULE
-- Building package: PERI
-- Building package: POEMS
-- Building package: QEQ
-- Building package: REPLICA
-- Building package: RIGID
-- Building package: SHOCK
-- Building package: SPIN
-- Building package: SNAP
-- Building package: SRD
-- Building package: KIM
-- Building package: PYTHON
-- Building package: VORONOI
-- Building package: USER-ATC
-- Building package: USER-BOCS
-- Building package: USER-CGDNA
-- Building package: USER-MESO
-- Building package: USER-CGSDK
-- Building package: USER-COLVARS
-- Building package: USER-DIFFRACTION
-- Building package: USER-DPD
-- Building package: USER-DRUDE
-- Building package: USER-EFF
-- Building package: USER-FEP
-- Building package: USER-H5MD
-- Building package: USER-MANIFOLD
-- Building package: USER-MEAMC
-- Building package: USER-MGPT
-- Building package: USER-MISC
-- Building package: USER-MOFFF
-- Building package: USER-PHONON
-- Building package: USER-PTM
-- Building package: USER-QTB
-- Building package: USER-REAXC
-- Building package: USER-SDPD
-- Building package: USER-SMTBQ
-- Building package: USER-SPH
-- Building package: USER-TALLY
-- Building package: USER-UEF
-- Building package: USER-YAFF
-- Building package: USER-OMP
-- Building package: OPT
-- Building package: GPU
-- The following packages have been found:
 * OpenMP
 * FFTW3
 * LAPACK
 * Threads
 * BLAS
 * PythonLibs
 * JPEG
 * PNG
 * ZLIB
 * VORO
 * PkgConfig
 * KIM-API
 * HDF5
 * OpenCL
 * PythonInterp
-- <<< Build configuration >>>
   Build type       
   Install path     /usr
   Compilers and Flags:
   C++ Compiler     /usr/bin/c++
       Type         GNU
       Version      4.8.5
   C++ Flags        -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp 
   Defines          LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_USER_OMP
-- C Compiler /usr/bin/cc
     Type     GNU
     Version  4.8.5
     C Flags  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp 
-- Linker flags:
   Executable      -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags
-- Shared libraries  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags
-- Link libraries: mpi_stubs;/usr/lib64/libfftw3.so;/usr/lib64/libpython3.6m.so;/usr/lib64/libjpeg.so;/usr/lib64/libpng.so;/usr/lib64/libz.so;/usr/lib64/libvoro++.so;-lkim-api;cslib;m;poems;atc;colvars;h5md;gpu
-- GPU Api: OPENCL
-- OCL Tune: GENERIC
-- GPU Precision: MIXED
-- Using FFTW3 as FFT
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     LIB_SUFFIX
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/lammps-stable_5Jun2019/mpich
+ /usr/bin/make -j4
/usr/bin/cmake3 -S/builddir/build/BUILD/lammps-stable_5Jun2019/cmake -B/builddir/build/BUILD/lammps-stable_5Jun2019/mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/depend
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/msi2lmp.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/mpi_stubs.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/poems.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/colvars.dir/DependInfo.cmake --color=
Scanning dependencies of target mpi_stubs
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  0%] Building C object CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o
Scanning dependencies of target msi2lmp
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c
Scanning dependencies of target poems
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c
Scanning dependencies of target colvars
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp
[  0%] Linking C static library libmpi_stubs.a
/usr/bin/cmake3 -P CMakeFiles/mpi_stubs.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/mpi_stubs.dir/link.txt --verbose=1
/usr/bin/ar qc libmpi_stubs.a  CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o
/usr/bin/ranlib libmpi_stubs.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  0%] Built target mpi_stubs
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c: In function 'ReadCarFile':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:101:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAX_LINE_LENGTH,CarF); /* Read header line */
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:108:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF); /* Comment line */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:109:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF); /* Date stamp */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:110:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fscanf(CarF,"%*s %lf %lf %lf %lf %lf %lf %*s",
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:124:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH, CarF); /* Comment line */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:125:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH, CarF); /* Date Stamp */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:146:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:180:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:189:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(CarF,"%s %lf %lf %lf %*s %d %s %s %lf",
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:209:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:210:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
[  1%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp
[  1%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c: In function 'SearchAndFill':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:114:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:119:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:121:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:223:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c
[  2%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c
[  2%] Linking C executable msi2lmp
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/msi2lmp.dir/link.txt --verbose=1
/usr/bin/cc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -rdynamic CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o  -o msi2lmp -lm 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  2%] Built target msi2lmp
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/atc.dir/DependInfo.cmake --color=
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp
Scanning dependencies of target atc
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  2%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h: In constructor 'TreeNode::TreeNode(const int&, TreeNode*, TreeNode*, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h:36:6: warning: 'TreeNode::data' will be initialized after [-Wreorder]
BUILDSTDERR:   int data;
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h:32:12: warning:   'TreeNode* TreeNode::left' [-Wreorder]
BUILDSTDERR:   TreeNode *left;
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp:22:1: warning:   when initialized here [-Wreorder]
BUILDSTDERR:  TreeNode::TreeNode (const int & item, TreeNode *lptr,TreeNode *rptr,
BUILDSTDERR:  ^
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp
[  3%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  3%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp
[  4%] Linking CXX static library libpoems.a
/usr/bin/cmake3 -P CMakeFiles/poems.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/poems.dir/link.txt --verbose=1
/usr/bin/ar qc libpoems.a  CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o
/usr/bin/ranlib libpoems.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Built target poems
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/cslib.dir/DependInfo.cmake --color=
Scanning dependencies of target cslib
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp: In member function 'void CSLIB_NS::CSlib::onefield(int, int, int&, int&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp:649:26: warning: 'bigbytes' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    nbytes = (int) bigbytes;
BUILDSTDERR:                           ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp:20:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp: In member function 'virtual void CSLIB_NS::MsgFile::recv(int&, int*&, int&, char*&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:125:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(lengths,sizeof(int),2,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:132:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(header,sizeof(int),nheader,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:135:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(buf,1,nbuf,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp: In member function 'void CSLIB_NS::MsgMPITwo::init(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp:60:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(port,MPI_MAX_PORT_NAME,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp
[  4%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Linking CXX static library libcsnompi.a
/usr/bin/cmake3 -P CMakeFiles/cslib.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/cslib.dir/link.txt --verbose=1
/usr/bin/ar qc libcsnompi.a  CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o
/usr/bin/ranlib libcsnompi.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Built target cslib
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/h5md.dir/DependInfo.cmake --color=
Scanning dependencies of target h5md
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Building C object CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c
[  4%] Linking C static library libh5md.a
/usr/bin/cmake3 -P CMakeFiles/h5md.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1
/usr/bin/ar qc libh5md.a  CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o
/usr/bin/ranlib libh5md.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Built target h5md
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
Scanning dependencies of target gitversion
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/cmake3 -DCMAKE_CURRENT_SOURCE_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles" -P /builddir/build/BUILD/lammps-stable_5Jun2019/cmake/Modules/generate_lmpgitversion.cmake
-- Generating lmpgitversion.h...
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Built target gitversion
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/gpu.dir/DependInfo.cmake --color=
[  4%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp
Scanning dependencies of target gpu
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In member function 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:182:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (_ef_atom)
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:196:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (_vf_atom)
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In member function 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:231:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (_ef_atom)
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:250:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (_vf_atom)
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In instantiation of 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*, double&) [with numtyp = float; acctyp = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:313:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:224:7: warning: unused variable 'ii' [-Wunused-variable]
BUILDSTDERR:    int ii, vstart=0, iend=_inum;
BUILDSTDERR:        ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
Scanning dependencies of target ocl_get_devices
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  5%] Building CXX object CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DUCL_OPENCL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp:25:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp
[  5%] Linking CXX executable ocl_get_devices
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -rdynamic CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o  -o ocl_get_devices -lOpenCL 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Built target ocl_get_devices
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp
[  7%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp
[  8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp: In instantiation of 'void LAMMPS_AL::EAM<numtyp, acctyp>::loop(bool, bool) [with numtyp = float; acctyp = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:533:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:448:14: warning: variable 'vflag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int eflag, vflag;
BUILDSTDERR:               ^
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp
[ 11%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp
[ 11%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp
[ 11%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp
[ 12%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'void Lepton::CompiledExpression::compileExpression(const Lepton::ExpressionTreeNode&, std::vector<std::pair<Lepton::ExpressionTreeNode, int> >&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:91:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < node.getChildren().size(); i++) {
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:113:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              for (int i = 1; i < args.size(); i++)
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'double Lepton::CompiledExpression::evaluate() const':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:170:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < variablesToCopy.size(); i++)
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:175:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int step = 0; step < operation.size(); step++) {
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:180:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              for (int i = 0; i < args.size(); i++)
BUILDSTDERR:                                            ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const std::vector<Lepton::ExpressionTreeNode>&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:40:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&, const Lepton::ExpressionTreeNode&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:47:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:53:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:58:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.h:9,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_kernel.h:27:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ParsedExpression Lepton::Parser::parse(const string&, const std::map<std::basic_string<char>, Lepton::CustomFunction*>&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:181:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (pos != tokens.size())
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:190:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos != tokens.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ExpressionTreeNode Lepton::Parser::parsePrecedence(const std::vector<Lepton::ParseToken>&, int&, const std::map<std::basic_string<char>, Lepton::CustomFunction*>&, const std::map<std::basic_string<char>, Lepton::ExpressionTreeNode>&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:201:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (pos == tokens.size())
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:227:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen)
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:241:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen)
BUILDSTDERR:                                 ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp
[ 15%] Linking CXX static library libcolvars.a
/usr/bin/cmake3 -P CMakeFiles/colvars.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/colvars.dir/link.txt --verbose=1
/usr/bin/ar qc libcolvars.a  CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
/usr/bin/ranlib libcolvars.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 15%] Built target colvars
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp
[ 16%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp
[ 16%] Linking CXX static library libgpu.a
/usr/bin/cmake3 -P CMakeFiles/gpu.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/gpu.dir/link.txt --verbose=1
/usr/bin/ar qc libgpu.a  CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/ranlib libgpu.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 16%] Built target gpu
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Array.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Array2D.h:9,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp:2:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::string, ATC::RESTART_LIST*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp:164:42: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&myVal,sizeof(double),1,fp);
BUILDSTDERR:                                           ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseVector.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.h:11,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp
[ 19%] Linking CXX static library libatc.a
/usr/bin/cmake3 -P CMakeFiles/atc.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/atc.dir/link.txt --verbose=1
/usr/bin/ar qc libatc.a  CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/ranlib libatc.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 19%] Built target atc
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/lammps.dir/DependInfo.cmake --color=
Scanning dependencies of target lammps
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp
[ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp.o
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:337:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:346:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:349:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp:132:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp: In member function 'void LAMMPS_NS::Atom::data_atoms(int, char*, LAMMPS_NS::tagint, LAMMPS_NS::tagint, int, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp:979:48: warning: 'iptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        imagedata = ((imageint) (atoi(values[iptr]) + IMGMAX) & IMGMASK) |
BUILDSTDERR:                                                 ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:338:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:347:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:350:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp:130:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp: In member function 'virtual void LAMMPS_NS::CommBrick::borders()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp:714:28: warning: 'nfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nsend,nrecv,sendflag,nfirst,nlast,ngroup;
BUILDSTDERR:                             ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp: In member function 'virtual void LAMMPS_NS::ComputeADF::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp:312:7: warning: 'x0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int x0;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp: In member function 'void LAMMPS_NS::CommTiled::box_drop_brick(int, double*, double*, int&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp:1500:17: warning: 'dir' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += dir;
BUILDSTDERR:                  ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp: In member function 'virtual void LAMMPS_NS::CommTiled::borders()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp:818:9: warning: 'nlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          for (i = atom->nlocal; i < nlast; i++) {
BUILDSTDERR:          ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp: In member function 'int LAMMPS_NS::ComputeAngleLocal::compute_angles(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:301:25: warning: 'theta' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ptr[n] = 180.0*theta/MY_PI;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:309:17: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ivar++;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:247:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:245:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->angle_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp: In member function 'int LAMMPS_NS::ComputeBondLocal::compute_bonds(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:400:28: warning: 'engrot' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engrot;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:397:28: warning: 'engvib' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engvib;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:403:30: warning: 'engtrans' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engtrans;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:391:28: warning: 'engpot' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engpot;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:406:34: warning: 'omegasq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = sqrt(omegasq);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:409:26: warning: 'vvib' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = vvib;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:413:19: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ivar++;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:281:47: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          btype = onemols[imol]->bond_type[iatom][i];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:281:29: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          btype = onemols[imol]->bond_type[iatom][i];
BUILDSTDERR:                              ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin1d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1512:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap < boxlo[idim]) xremap += prd[idim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1513:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap >= boxhi[idim]) xremap -= prd[idim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1512:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap < boxlo[idim]) xremap += prd[idim];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin2d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1614:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap < boxlo[jdim]) yremap += prd[jdim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1615:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap >= boxhi[jdim]) yremap -= prd[jdim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1614:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap < boxlo[jdim]) yremap += prd[jdim];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin3d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1747:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap < boxlo[kdim]) zremap += prd[kdim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1748:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap >= boxhi[kdim]) zremap -= prd[kdim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1747:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap < boxlo[kdim]) zremap += prd[kdim];
BUILDSTDERR:                               ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In constructor 'LAMMPS_NS::ComputeChunkAtom::ComputeChunkAtom(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:413:29: warning: 'scale' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          delta[idim] *= scale;
BUILDSTDERR:                              ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp: In member function 'int LAMMPS_NS::ComputeDihedralLocal::compute_dihedrals(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:321:17: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ivar++;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:245:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:244:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->dihedral_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp: In member function 'virtual void LAMMPS_NS::ComputeGlobalAtom::compute_peratom()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp:521:29: warning: 'vmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j >= 0 && j < vmax) array_atom[i][m] = source[j];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp:452:29: warning: 'vmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j >= 0 && j < vmax) array_atom[i][m] = source[j];
BUILDSTDERR:                              ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp: In member function 'int LAMMPS_NS::ComputeImproperLocal::compute_impropers(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:163:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:162:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->improper_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:218:17: warning: 'cbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            cbuf[n] = 180.0*acos(c)/MY_PI;
BUILDSTDERR:                  ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp: In member function 'virtual double LAMMPS_NS::ComputePressure::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp:205:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp: In member function 'virtual void LAMMPS_NS::ComputePressure::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp:243:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp: In member function 'void LAMMPS_NS::CreateAtoms::add_random()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:668:55: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              coord[1] < boxlo[1] || coord[1] >= boxhi[1] ||
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:668:31: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              coord[1] < boxlo[1] || coord[1] >= boxhi[1] ||
BUILDSTDERR:                                ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp: In member function 'void LAMMPS_NS::CreateAtoms::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:229:46: warning: 'molseed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ranmol = new RanMars(lmp,molseed+comm->me);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:119:24: warning: 'iarg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (strcmp(arg[iarg],"basis") == 0) {
BUILDSTDERR:                         ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp: In member function 'void LAMMPS_NS::CreateBonds::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp:129:10: warning: 'style' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    } else if (style == SANGLE) {
BUILDSTDERR:           ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:322:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:331:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:334:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp: In member function 'virtual void LAMMPS_NS::Dump::write()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:516:20: warning: 'vhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->v = vhold;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:515:20: warning: 'xhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->x = xhold;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:517:28: warning: 'imagehold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->image = imagehold;
BUILDSTDERR:                             ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp: In member function 'void LAMMPS_NS::Domain::box_too_small_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:855:43: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:855:25: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                          ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp: In member function 'void LAMMPS_NS::Domain::image_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:756:43: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:756:25: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                          ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp: In member function 'virtual int LAMMPS_NS::DumpCustom::count()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:1032:30: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  (*ptr != 0.0 && value != 0.0))
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:529:13: warning: 'values' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      double *values;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:528:18: warning: 'ptrhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      double *ptr,*ptrhold;
BUILDSTDERR:                   ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp: In member function 'void LAMMPS_NS::DumpImage::create_image()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1033:66: warning: 'color2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              image->draw_cylinder(xmid,x[atom2],color2,diameter,3);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1027:66: warning: 'color1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              image->draw_cylinder(x[atom1],xmid,color1,diameter,3);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:968:59: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            btype = atom->map(onemols[imol]->bond_type[iatom][m]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:968:41: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            btype = atom->map(onemols[imol]->bond_type[iatom][m]);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:831:55: warning: 'color' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        image->draw_cylinder(pt1,pt2,color,ldiamvalue,3);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1036:72: warning: 'diameter' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          } else image->draw_cylinder(x[atom1],x[atom2],color,diameter,3);
BUILDSTDERR:                                                                         ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp: In member function 'void LAMMPS_NS::Finish::end(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp:777:33: warning: 'nneighfull' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      tmp = MAX(nneigh,nneighfull);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp:777:33: warning: 'nneigh' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp:1057:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp:537:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp:854:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp:482:34: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      values[lastindex][i] = scalar;
BUILDSTDERR:                                   ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp:499:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:700:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:911:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'int LAMMPS_NS::FixAveTime::column_length(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:971:9: warning: 'lengthone' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (lengthone != nrows)
BUILDSTDERR:          ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:629:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else vector[i] += scalar;
BUILDSTDERR:                              ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In constructor 'LAMMPS_NS::FixAveTime::FixAveTime(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:411:9: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (value == -1)
BUILDSTDERR:          ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp: In member function 'void LAMMPS_NS::FixBalance::rebalance()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp:299:67: warning: 'sendproc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (lbstyle == BISECTION) irregular->migrate_atoms(0,1,sendproc);
BUILDSTDERR:                                                                    ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp: In constructor 'LAMMPS_NS::FixDeform::FixDeform(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp:184:18: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          set[index].style = VARIABLE;
BUILDSTDERR:                   ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp: In member function 'virtual void LAMMPS_NS::FixMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:847:61: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:817:61: warning: 'dy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:787:61: warning: 'dx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx;
BUILDSTDERR:                                                              ^
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp: In member function 'virtual void LAMMPS_NS::FixRecenter::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp:182:41: warning: 'bboxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ztarget = bboxlo[2] + zcom*(bboxhi[2] - bboxlo[2]);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp:182:53: warning: 'bboxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ztarget = bboxlo[2] + zcom*(bboxhi[2] - bboxlo[2]);
BUILDSTDERR:                                                      ^
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp: In member function 'void LAMMPS_NS::FixRestrain::restrain_dihedral(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp:566:33: warning: 'ddf1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    df1 = df1*cos_target[m] - ddf1*sin_target[m];
BUILDSTDERR:                                  ^
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp: In member function 'void LAMMPS_NS::FixTMD::readfile(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp:457:7: warning: 'imageflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (imageflag)
BUILDSTDERR:        ^
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp: In constructor 'LAMMPS_NS::FixVector::FixVector(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp:149:26: warning: 'finalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      extarray = finalvalue;
BUILDSTDERR:                           ^
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp.o
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp: In constructor 'LAMMPS_NS::FixWall::FixWall(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp:77:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp: In constructor 'LAMMPS_NS::FixWallReflect::FixWallReflect(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp:68:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:739:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&ngroup,sizeof(int),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:751:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:755:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(names[i],sizeof(char),n,fp);
BUILDSTDERR:                                                      ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp: In member function 'void LAMMPS_NS::Image::draw_cube(double*, double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp:516:31: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            tdir[2] = camDir[2] * t;
BUILDSTDERR:                                ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:319:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:328:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:331:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp: In function 'void MathExtra::no_squish_rotate(int, double*, double*, double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:52: warning: 'kq[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:39: warning: 'kq[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:26: warning: 'kq[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:13: warning: 'kq[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:271:28: warning: 'kp[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[3] = c_phi*p[3] + s_phi*kp[3];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:270:28: warning: 'kp[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[2] = c_phi*p[2] + s_phi*kp[2];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:269:28: warning: 'kp[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[1] = c_phi*p[1] + s_phi*kp[1];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:268:28: warning: 'kp[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[0] = c_phi*p[0] + s_phi*kp[0];
BUILDSTDERR:                             ^
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1363:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1380:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1383:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1386:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1389:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1392:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1395:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1405:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1422:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1425:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1428:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1431:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1434:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp: In member function 'int LAMMPS_NS::Neighbor::choose_stencil(LAMMPS_NS::NeighRequest*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp:1675:5: warning: 'newtflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (newtflag) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp: In member function 'int LAMMPS_NS::Neighbor::choose_pair(LAMMPS_NS::NeighRequest*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp:1783:5: warning: 'newtflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (newtflag) {
BUILDSTDERR:      ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp: In member function 'virtual void LAMMPS_NS::NPairFullBin::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:104:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:102:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:102:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairFullBinGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:110:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:108:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:108:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp: In member function 'virtual void LAMMPS_NS::NPairFullMulti::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:111:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:109:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:109:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp: In member function 'virtual void LAMMPS_NS::NPairFullNsq::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:105:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:103:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:103:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:89:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairFullNsqGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:104:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:102:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:102:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:108:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:106:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:106:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtoffGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:116:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:114:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:114:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:140:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:138:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:138:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:115:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:113:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:113:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:148:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:146:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:146:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:123:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:121:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:121:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:106:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:104:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:104:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:90:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewtoffGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:115:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:113:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:113:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:127:39: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                        ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:123:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:121:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:121:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:91:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:174:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:132:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:130:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:130:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:152:41: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:72:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:220:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:178:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:176:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:176:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:153:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:71:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:220:45: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:221:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:219:29: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[inum] = i;
BUILDSTDERR:                              ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:182:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:140:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:138:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:138:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:160:41: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:72:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:169:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:130:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:128:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:128:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:148:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:76:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:114:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:189:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:149:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:147:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:147:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:168:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:78:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:117:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfSizeNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp:79:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfSizeNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp:82:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp: In member function 'virtual void LAMMPS_NS::NPairSkipRespa::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:152:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:153:36: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:223:67: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (posix_memalign(&ptr, LAMMPS_MEMALIGN, pagesize*sizeof(T)))
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:64:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp: In member function 'void LAMMPS_NS::Pair::write_file(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:1677:5: warning: 'rsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (rsq < cutsq[itype][jtype]) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:1688:32: warning: 'q_hold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (atom->q) atom->q = q_hold;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp: In member function 'virtual void LAMMPS_NS::Pair::init_tables(double, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:414:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (msmflag) ftable[i] = qqrd2e/r * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:401:30: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          etable[i] = qqrd2e/r * egamma;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:405:30: warning: 'derfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          etable[i] = qqrd2e/r * derfc;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:415:61: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            else ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:415:56: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            else ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2);
BUILDSTDERR:                                                         ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:281:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:285:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&AA[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:286:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&BB[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:287:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&aa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:288:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:289:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&beta[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:290:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:320:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:321:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:333:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:337:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:338:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:339:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:340:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:341:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:342:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:373:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:374:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:375:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:376:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:365:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:369:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:370:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:371:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:372:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:373:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:374:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:406:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:407:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:409:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:410:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:167:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:163:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:164:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:168:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:163:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:488:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:489:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        + d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:483:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:484:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:483:37: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                      ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:364:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:368:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:369:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:370:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:371:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:372:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:373:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:405:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:406:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:407:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:409:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulWolf::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:486:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:487:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        + d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:481:33: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:482:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:481:41: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:170:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:167:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:171:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:311:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:315:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:316:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:317:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:318:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:347:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:348:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:349:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:350:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:367:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:371:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:372:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:373:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:374:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:375:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:406:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:407:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:409:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:410:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:468:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:468:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:147:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:147:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:248:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:251:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:275:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:276:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:277:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:152:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:153:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:154:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:155:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:256:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:281:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:282:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:283:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:253:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:277:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:278:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:279:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual double LAMMPS_NS::PairCoulWolf::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:317:33: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:318:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:317:41: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                          ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:318:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:322:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:323:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:324:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:352:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:353:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:354:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:355:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:233:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:237:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:238:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:266:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_start,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:267:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_stop,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:268:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:269:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:270:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:284:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:288:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:289:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:290:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:317:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:318:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:319:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:674:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:697:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:700:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:706:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:710:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(special_lj[m],sizeof(double),4,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:713:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:717:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(special_coul[m],sizeof(double),4,fp);
BUILDSTDERR:                                                               ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:399:7: warning: 'multflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int multflag;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp: In member function 'virtual void LAMMPS_NS::PairHybridOverlay::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp:47:7: warning: 'multflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int multflag;
BUILDSTDERR:        ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:610:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:614:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:615:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:616:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:645:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:646:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:647:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:648:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:282:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:286:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:287:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:288:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:289:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:316:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:392:44: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_lj*forcelj*r2inv;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:396:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual double LAMMPS_NS::PairLJCubic::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:348:32: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:345:66: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:133:40: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:130:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:604:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:608:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:609:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:610:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:639:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:640:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:641:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:642:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:356:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:360:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:361:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:362:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:363:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:393:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:394:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:395:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:396:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:397:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:452:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:139:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:386:44: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_lj*forcelj*r2inv;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:390:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:173:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:174:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:175:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:176:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:177:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulDebye::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:215:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:211:71: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:211:53: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:379:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:383:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:384:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:385:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:415:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:416:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:417:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:418:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:419:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:420:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:109:72: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:109:54: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:112:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:167:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:168:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:161:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:167:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:37: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:458:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:375:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:379:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:380:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:381:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:412:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:413:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:414:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:415:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:416:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:417:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:171:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:164:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:327:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:331:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:332:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:333:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:334:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:363:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:364:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:365:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:366:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:344:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:348:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:349:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:350:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:351:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:381:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:382:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:383:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:384:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual double LAMMPS_NS::PairLJGromacs::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:438:65: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:140:71: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:382:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:386:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:387:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:416:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:417:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:418:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_inner,sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:419:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:420:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:421:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual double LAMMPS_NS::PairLJGromacsCoulGromacs::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:503:51: warning: 'tlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:499:66: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:492:38: warning: 'tc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tc*tc*tc * (coulsw3 + coulsw4*tc);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:159:58: warning: 'tc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoulswitch = tc*tc*tc * (coulsw3 + coulsw4*tc);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:169:59: warning: 'tlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:165:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:165:46: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                               ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:355:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:359:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:360:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:361:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:362:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:392:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:393:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:394:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:395:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual double LAMMPS_NS::PairLJSmooth::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:453:30: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:452:60: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:448:19: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]) -
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:143:38: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:142:68: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:138:27: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:                            ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:286:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:290:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:291:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:292:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:319:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:320:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:631:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:635:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:636:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:637:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamR[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:638:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamA[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:639:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:670:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:671:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:672:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:673:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:268:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:272:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:273:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:274:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:275:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:303:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:304:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:305:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:394:46: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_mie*forcemie*r2inv;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:398:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:249:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:253:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&prefactor[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:254:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:279:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:978:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:979:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:980:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewaldflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:981:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&pppmflag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:982:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&msmflag,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:983:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dispersionflag,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:984:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tip4pflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual double LAMMPS_NS::PairTable::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1043:41: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1043:14: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1040:35: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phi = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:177:49: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:177:22: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:174:45: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:289:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:293:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:294:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:295:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:323:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:324:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:325:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:255:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:259:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:260:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:287:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:288:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:289:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:290:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp: In member function 'virtual void LAMMPS_NS::PairZBL::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp:141:53: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp: In member function 'virtual double LAMMPS_NS::PairZBL::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp:289:45: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                              ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:175:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:179:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:204:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:205:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&coeffflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp: In member function 'void LAMMPS_NS::ProcMap::output(char*, int*, int***)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:687:16: warning: 'kme' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[5] = kme + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:686:16: warning: 'jme' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[4] = jme + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:685:16: warning: 'ime' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[3] = ime + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp: In member function 'int LAMMPS_NS::ProcMap::best_factors(int, int**, int*, int, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:881:10: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return index;
BUILDSTDERR:           ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp: In member function 'void LAMMPS_NS::RCB::compute(int, int, double**, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:559:73: warning: 'procpartner2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world);
BUILDSTDERR:                                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:487:29: warning: 'valuehalf_select' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else lo[dim] = valuehalf;
BUILDSTDERR:                              ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp: In member function 'void LAMMPS_NS::RCB::compute_old(int, int, double**, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:1051:73: warning: 'procpartner2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world);
BUILDSTDERR:                                                                          ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp: In member function 'LAMMPS_NS::bigint LAMMPS_NS::ReadDump::seek(LAMMPS_NS::bigint, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:289:10: warning: 'ntimestep' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bigint ntimestep;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp: In member function 'LAMMPS_NS::bigint LAMMPS_NS::ReadDump::next(LAMMPS_NS::bigint, LAMMPS_NS::bigint, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:429:5: warning: 'eofflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (eofflag) ntimestep = -1;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:384:10: warning: 'ntimestep' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bigint ntimestep;
BUILDSTDERR:           ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:307:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:311:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&procsperfile,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:314:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:318:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:324:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(buf,sizeof(double),n,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:384:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:387:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&procsperfile,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:396:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:400:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:406:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(buf,sizeof(double),n,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::file_layout()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1106:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(all_written_send_sizes,sizeof(int),nprocs_file,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'char* LAMMPS_NS::ReadRestart::read_string()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1288:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(value,sizeof(char),n,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1300:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(vec,sizeof(int),n,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1311:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(vec,sizeof(double),n,fp);
BUILDSTDERR:                                               ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp: In member function 'int LAMMPS_NS::Region::surface(double, double, double, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:191:34: warning: 'xorig[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].delz = xorig[2] - zs;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:190:34: warning: 'xorig[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].dely = xorig[1] - ys;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:189:34: warning: 'xorig[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].delx = xorig[0] - xs;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp: In member function 'virtual int LAMMPS_NS::RegBlock::surface_exterior(double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'zp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    add_contact(0,x,xp,yp,zp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'yp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'xp' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp.o
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp: In member function 'virtual int LAMMPS_NS::RegCylinder::surface_exterior(double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'zp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      add_contact(0,x,xp,yp,zp);
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'yp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'xp' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp: In member function 'void LAMMPS_NS::Run::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp:173:41: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (stopflag) update->endstep = stop;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp:171:45: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (startflag) update->beginstep = start;
BUILDSTDERR:                                              ^
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp: In member function 'void LAMMPS_NS::Set::setrandom(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp:1152:24: warning: 'quat' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            quat[1] = 0.0;
BUILDSTDERR:                         ^
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp: In member function 'void LAMMPS_NS::Universe::reorder(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp:149:38: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    MPI_Comm_split(uorig,0,key,&uworld);
BUILDSTDERR:                                       ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:684:33: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(fp,"%d",&nextindex);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp: In member function 'void LAMMPS_NS::Velocity::set(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:548:63: warning: 'zvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(zvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:543:63: warning: 'yvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(yvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:538:63: warning: 'xvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(xvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:461:17: warning: 'vz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vz *= zscale;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:457:17: warning: 'vy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vy *= yscale;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:453:17: warning: 'vx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vx *= xscale;
BUILDSTDERR:                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:34:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.h: In member function 'void LAMMPS_NS::Velocity::create(double, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.h:172:5: warning: 'vhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sfree(array[0]);
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:169:12: note: 'vhold' was declared here
BUILDSTDERR:    double **vhold;
BUILDSTDERR:             ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::group_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3933:39: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    } else argstack[nargstack++] = value;
BUILDSTDERR:                                        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp: In member function 'void LAMMPS_NS::LAMMPS::init_pkg_lists()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:899:6: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without
BUILDSTDERR:  void LAMMPS::init_pkg_lists()
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'double LAMMPS_NS::Variable::evaluate_boolean(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4703:7: warning: 'op' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int op,opprevious,flag1,flag2;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::special_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4007:20: warning: 'nstride' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      int index,nvec,nstride;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4150:7: warning: 'nvec' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        for (int i = 0; i < nvec; i++) {
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'double LAMMPS_NS::Variable::evaluate(char*, LAMMPS_NS::Variable::Tree**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:1185:7: warning: 'op' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int op,opprevious;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp: In constructor 'LAMMPS_NS::LAMMPS::LAMMPS(int, char**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:163:14: warning: 'wlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int wfirst,wlast;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:163:7: warning: 'wfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int wfirst,wlast;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp: In member function 'virtual double LAMMPS_NS::ComputeERotateAsphere::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:139:35: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertia[0] = tbonus[tri[i]].inertia[0];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:130:32: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          length = lbonus[line[i]].length;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:109:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'void LAMMPS_NS::Variable::compute_atom(int, int, double*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:1007:53: warning: 'vstore' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (mask[i] & groupbit) result[m] = vstore[i];
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::math_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3685:37: warning: 'value2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        double value = value1 + value2*(1.0-cos(omega*delta*update->dt));
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3382:42: warning: 'value1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        argstack[nargstack++] = sqrt(value1);
BUILDSTDERR:                                           ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp: In member function 'virtual void LAMMPS_NS::FixNVEAsphereNoforce::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp:94:33: warning: 'bonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = bonus[ellipsoid[i]].shape;
BUILDSTDERR:                                  ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:466:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:469:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:473:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:477:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:478:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:479:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:511:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamma,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:512:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&upsilon,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:513:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:514:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:515:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:516:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:444:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:447:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:451:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:455:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:456:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:457:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:485:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:486:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp: In member function 'virtual void LAMMPS_NS::PairLineLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp:307:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'double LAMMPS_NS::PairGayBerne::gayberne_analytic(int, int, double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double*, double, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:36: warning: 'deta2[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:36: warning: 'deta2[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:36: warning: 'deta2[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:21: warning: 'dchi2[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:21: warning: 'dchi2[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:21: warning: 'dchi2[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:51: warning: '*((void*)& dUr2 +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:51: warning: '*((void*)& dUr2 +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:51: warning: 'dUr2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp: In member function 'virtual void LAMMPS_NS::PairTriLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp:381:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:219:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:194:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::BodyRoundedPolyhedron::data_body(int, int, int, int*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp:213:7: warning: 'nedges' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nedges,nentries;
BUILDSTDERR:        ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp.o
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp: In member function 'virtual void LAMMPS_NS::FixWallBodyPolygon::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp:341:60: warning: 'wall_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                            contact_list, num_contacts, facc);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp:303:9: warning: 'eradi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (delr > eradi) dz = cylradius;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolygon::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:245:11: warning: variable 'interact' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        int interact, num_contacts, done;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:14: warning: variable 'rsqinv' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:33: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:39: warning: variable 'eradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:45: warning: variable 'rradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:51: warning: variable 'rradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'void LAMMPS_NS::PairBodyRoundedPolygon::sphere_against_sphere(int, int, double, double, double, double, double, double, double**, double**, double**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:602:10: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double eradi,eradj,rradi,rradj;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:602:16: warning: variable 'eradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double eradi,eradj,rradi,rradj;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:604:32: warning: variable 'fn' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rij,rsqinv,R,fx,fy,fz,fn[3],ft[3],fpair,shift,energy;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:604:38: warning: variable 'ft' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rij,rsqinv,R,fx,fy,fz,fn[3],ft[3],fpair,shift,energy;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'int LAMMPS_NS::PairBodyRoundedPolygon::vertex_against_edge(int, int, double, double, double**, double**, double**, LAMMPS_NS::tagint*, LAMMPS_NS::PairBodyRoundedPolygon::Contact*, int&, double&, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:707:24: warning: variable 'nei' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ni, npi, ifirst, nei, iefirst;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:707:29: warning: variable 'iefirst' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ni, npi, ifirst, nei, iefirst;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:708:11: warning: variable 'npj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int nj, npj, jfirst, nej, jefirst;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:709:32: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double xpi[3], xpj[3], dist, eradi, eradj, rradi, rradj;
BUILDSTDERR:                                 ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::FixWallBodyPolyhedron::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp:361:58: warning: 'wall_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                          contact_list, num_contacts, facc);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp: In member function 'virtual void LAMMPS_NS::PairBodyNparticle::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp:327:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolyhedron::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:277:11: warning: variable 'interact' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        int interact, num_contacts;
BUILDSTDERR:            ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'void LAMMPS_NS::PairBodyRoundedPolyhedron::sanity_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:2347:22: warning: variable 'x3' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x1[3],x2[3],x3[3],x4[3],h_a[3],h_b[3],d_a,d_b;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:2347:28: warning: variable 'x4' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x1[3],x2[3],x3[3],x4[3],h_a[3],h_b[3],d_a,d_b;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:375:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:376:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:377:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:378:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:380:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:381:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:382:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:384:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:385:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:386:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:387:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolygon::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:107:15: warning: 'iefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nei,nej,iefirst,jefirst;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:107:7: warning: 'nei' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nei,nej,iefirst,jefirst;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:106:21: warning: 'ifirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:106:13: warning: 'npi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:186:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:187:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:188:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:189:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:839:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:840:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:841:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:842:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:843:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:844:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:846:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:847:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:848:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:849:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:851:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:852:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:853:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:854:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:856:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:857:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:858:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:859:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:861:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:862:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:863:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:864:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:866:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:867:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:868:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:869:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:871:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:872:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:873:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:875:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:876:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:877:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:608:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:609:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:611:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:612:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:613:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:614:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:615:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:616:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:310:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:314:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:315:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:316:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:345:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:346:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:347:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:348:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp: In member function 'void LAMMPS_NS::ImproperClass2::angleangle(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:824:58: warning: 'eimproper' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                 delxBD-delxBC,delyBD-delyBC,delzBD-delzBC);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolyhedron::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:221:21: warning: 'eradi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r > eradi + eradj + cut_inner) continue;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:43: warning: 'iefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:35: warning: 'nei' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:21: warning: 'ifirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:13: warning: 'npi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:              ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:366:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:372:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:373:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:406:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:407:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:464:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:464:37: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                      ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:144:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:144:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:406:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:410:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:411:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:412:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:443:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:444:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:445:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:446:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:447:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:448:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:449:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:538:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:538:37: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:531:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:531:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:534:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:529:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:176:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:181:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:184:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:184:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:178:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:178:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:609:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:613:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:614:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:649:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:650:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:651:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagfld,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:652:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:653:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:654:42: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_target, sizeof(double),1,fp);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:655:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed, sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:656:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:657:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:658:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:659:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:400:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:404:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a12[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:405:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:406:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:407:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:408:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:438:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:439:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:440:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:308:42: warning: 'a_pu' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_pu);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:240:42: warning: 'a_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_sh);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:689:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:693:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:694:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:727:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:728:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:729:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagfld,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:730:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:731:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:732:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:733:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:734:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:735:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp: In member function 'virtual void LAMMPS_NS::PairBrownianPoly::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp:295:42: warning: 'a_pu' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_pu);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp:244:42: warning: 'a_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_sh);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual double LAMMPS_NS::PairColloid::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:543:20: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return factor_lj*phi;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:194:22: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        f[i][2] += delz*fpair;
BUILDSTDERR:                       ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1916:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1920:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1921:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1953:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1954:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1955:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1956:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1957:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1958:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1959:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1960:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSFCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:147:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:143:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:144:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:148:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:143:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:188:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:180:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:185:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:189:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:182:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:182:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolfCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:149:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:146:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:150:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:186:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:178:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:183:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:186:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:180:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:180:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:168:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:173:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:170:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:170:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:440:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:444:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:476:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:498:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:528:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:516:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:546:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:543:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:239:34: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:237:35: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:235:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:235:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:239:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:244:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:70: warning: 'd2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:62: warning: 'd1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:54: warning: 'd0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:47: warning: 'b2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:39: warning: 'b1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:31: warning: 'b0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:70: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:62: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:54: warning: 'g0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:301:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:183:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:188:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:192:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:185:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:185:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp: In member function 'virtual void LAMMPS_NS::FixPour::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:680:42: warning: 'natom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ninserted_mols = ninserted_atoms / natom;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:696:35: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        atom->nbonds += onemols[imol]->nbonds * ninserted_mols;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:654:65: warning: 'denstmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            atom->rmass[n] = 4.0*MY_PI/3.0 * radtmp*radtmp*radtmp * denstmp;
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:503:30: warning: 'radtmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          coords[0][3] = radtmp;
BUILDSTDERR:                               ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp: In member function 'void LAMMPS_NS::FixWallGran::granular(double, double, double, double, double*, double, double*, double*, double*, double*, double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:49: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:36: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:23: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1174:55: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    damp_normal_prefactor = normal_coeffs[1]*damp_normal;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1205:23: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      F_pulloff = 4*M_PI*coh*Reff;
BUILDSTDERR:                        ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:546:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:572:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kn,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:573:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kt,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:574:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamman,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:575:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gammat,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:576:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&xmu,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:577:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dampflag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1254:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1258:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&normal_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1259:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&damping_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1260:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&tangential_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1261:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&roll_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1262:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&twist_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1263:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&normal_coeffs[i][j],sizeof(double),4,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1264:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&tangential_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1265:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&roll_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1266:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&twist_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1267:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual double LAMMPS_NS::PairGranular::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1645:27: warning: 'magtortwist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[8] = magtortwist;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1643:19: warning: 'fr3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[6] = fr3;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1642:19: warning: 'fr2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[5] = fr2;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1641:19: warning: 'fr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[4] = fr1;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1644:18: warning: 'fr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[7] = fr;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:49: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:36: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:23: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1627:55: warning: 'history' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtortwist = -k_twist*history[twist_history_index] - damp_twist*magtwist;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1462:69: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    damp_normal_prefactor = normal_coeffs[itype][jtype][1]*damp_normal;
BUILDSTDERR:                                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1437:40: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sqrt3 = MAX(0, 4*dR - t5 + SIXROOT6*coh*MY_PI*R2/(E*t6));
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1437:50: warning: 'R2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sqrt3 = MAX(0, 4*dR - t5 + SIXROOT6*coh*MY_PI*R2/(E*t6));
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:385:49: warning: 'allhistory' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            history = &allhistory[size_history*jj];
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:455:71: warning: 'history' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              shrmag = sqrt(history[0]*history[0] + history[1]*history[1] +
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:171:8: warning: 'touch' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *touch,**firsttouch;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:392:30: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            F_pulloff = 4*MY_PI*coh*Reff;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:55: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:42: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:29: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:356:75: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          damp_normal_prefactor = normal_coeffs[itype][jtype][1]*damp_normal;
BUILDSTDERR:                                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:229:34: warning: 'firsthistory' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        allhistory = firsthistory[i];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:228:27: warning: 'firsttouch' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        touch = firsttouch[i];
BUILDSTDERR:                            ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp: In function 'void fft_3d(double (*)[2], double (*)[2], int, fft_plan_3d*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:9: warning: variable 'total' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:15: warning: variable 'length' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:22: warning: unused variable 'offset' [-Wunused-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:                       ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:921:79: warning: 'normal_coeffs_one[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          normal_coeffs[i][j][0] = normal_coeffs[j][i][0] = normal_coeffs_one[0];
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:913:61: warning: 'normal_coeffs_one[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        normal_coeffs[i][j][1] = normal_coeffs[j][i][1] = damp;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:919:60: warning: 'normal_coeffs_one[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                      poiss[i][j],poiss[i][j]);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:924:79: warning: 'normal_coeffs_one[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          normal_coeffs[i][j][3] = normal_coeffs[j][i][3] = normal_coeffs_one[3];
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual double LAMMPS_NS::PairGranular::init_one(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1214:10: warning: 'cutoff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return cutoff;
BUILDSTDERR:           ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:426:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:430:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:431:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:432:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:433:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:434:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:435:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:469:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:470:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:471:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:472:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:473:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:474:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:475:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:567:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:568:28: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:560:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:560:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:563:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:558:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:190:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:182:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:187:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:191:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:184:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:184:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:188:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:185:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:184:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:189:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:247:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:248:28: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:243:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:242:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:403:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:407:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:408:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:409:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:410:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:442:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:443:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:444:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:445:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:446:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:447:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:448:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:538:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:538:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:531:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:531:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:534:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:529:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:183:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:175:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:180:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:183:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:177:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:177:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:184:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:181:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:180:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:184:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:242:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:242:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:238:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:237:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:360:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:364:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_a_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:365:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_rho_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:366:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_c_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:367:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_buck_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:399:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_buck_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:400:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:401:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:402:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:403:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:404:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:405:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:296:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:299:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&scale[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:325:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:326:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:327:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:328:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:329:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:376:29: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:378:26: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:378:38: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:376:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:160:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:165:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:162:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:162:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp: In member function 'virtual void LAMMPS_NS::MSM::direct(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1642:47: warning: 'v5sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v5sum += v5_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1641:47: warning: 'v4sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v4sum += v4_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1640:47: warning: 'v3sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v3sum += v3_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1639:47: warning: 'v2sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v2sum += v2_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1638:47: warning: 'v1sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v1sum += v1_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1637:47: warning: 'v0sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v0sum += v0_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:151:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:146:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:148:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:148:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:206:31: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:208:26: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:208:38: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:206:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp: In member function 'void LAMMPS_NS::MSM::direct_top(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1997:50: warning: 'v5sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v5sum += v5_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1996:50: warning: 'v4sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v4sum += v4_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1995:50: warning: 'v3sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v3sum += v3_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1994:50: warning: 'v2sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v2sum += v2_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1993:50: warning: 'v1sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v1sum += v1_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1992:50: warning: 'v0sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v0sum += v0_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:828:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:832:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:833:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:867:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:868:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:385:39: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:413:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:385:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:419:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:416:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:972:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:964:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:964:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:967:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:962:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:522:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:514:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:514:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:517:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:512:33: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*egamma;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:896:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:901:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:902:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:903:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:935:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:936:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:937:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:938:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:216:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:211:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:220:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:213:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:213:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:220:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:519:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:553:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:550:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:196:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:201:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:205:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:198:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:198:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:205:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmfswCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1049:34: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        philj6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1044:16: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1032:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1032:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1035:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1030:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:571:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:614:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:611:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:798:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:802:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:803:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:804:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:835:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:836:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:837:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:838:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:839:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:840:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:841:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:218:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:223:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:239:42: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:220:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:220:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:237:47: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl12 = r6inv*lj3[itype][jtype]*r6inv -
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:932:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:924:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:924:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:927:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:922:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulMSM::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:364:39: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:388:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:364:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:394:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:391:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:474:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:466:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:466:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:469:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:464:33: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*egamma;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:511:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:541:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:538:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:208:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:203:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:212:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:205:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:205:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:182:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:187:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:191:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:184:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:184:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:536:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:542:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:414:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:419:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:416:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:409:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:408:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:336:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:332:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:416:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:360:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:364:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:365:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:366:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:397:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:398:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:399:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:400:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:401:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:402:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:403:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1547:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1548:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1554:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:475:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:476:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:477:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:478:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:479:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:382:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:387:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:384:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:377:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:376:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:304:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:300:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:384:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_middle()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:979:18: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:975:18: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:948:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:944:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:450:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:455:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:452:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:445:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:444:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:372:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:368:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:452:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_inner()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:718:18: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:714:18: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:687:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:683:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1420:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1419:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1321:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1317:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp: In member function 'virtual void LAMMPS_NS::FixQEQComb::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp:166:32: warning: 'ilist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,ii,iloop,loopmax,inum,*ilist;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp:166:26: warning: 'inum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,ii,iloop,loopmax,inum,*ilist;
BUILDSTDERR:                           ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3398:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3399:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:312:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:315:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:340:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:341:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_triple,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp:629:66: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fp,filename,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                                   ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::TORSION(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:1241:64: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ev_tally4(i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4981:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);  // skip first comment line
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4982:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4987:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5016:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5084:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);  // skip first comment line
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5086:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5088:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5092:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5097:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5101:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5103:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5105:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5114:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5121:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5125:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5129:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5131:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5135:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5137:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5141:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5143:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5147:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5149:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5153:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5155:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5159:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5161:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5163:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5172:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLINE,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5179:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5187:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5195:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5203:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5210:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5214:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5231:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLINE,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::Spbicubic(double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:4175:49: warning: 'yn1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (j > 0) df[1] += c * ((double) j) * xn * yn1;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::Sptricubic(double, double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:4215:46: warning: 'zn1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (k > 0) df[2] += c * kr * xn * yn * zn1;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::piRCSpline(double, double, double, int, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3283:10: warning: 'piRC' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return piRC;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5222:5: warning: 'nws' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(nws==3) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4967:13: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,k,n,m;
BUILDSTDERR:              ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:326:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:327:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:338:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:350:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:358:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:366:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:375:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLIB,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:384:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:391:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLIB,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:404:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:422:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:431:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:               fgets(s,MAXLIB,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:446:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:464:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:473:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                fgets(s,MAXLIB,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:488:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:506:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:515:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                fgets(s,MAXLIB,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::comb_zetaterm_d(double, double, double, double, double, double*, double, double*, double, double*, double*, double*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2309:44: warning: 'com6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              {com6+=prefac_ij2*pcrossk*dfc_k;}
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::FLJ(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:811:21: warning: 'dwij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair = dC*dwij / rij;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:32: warning: 'dwmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:33: warning: 'wmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:27: warning: 'dwkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:27: warning: 'wkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:826:27: warning: 'dwkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:822:28: warning: 'wkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkjS / rikS;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:845:22: warning: 'dwikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:22: warning: 'wikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:45: warning: 'rmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:45: warning: 'rkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:826:40: warning: 'rkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:845:45: warning: 'rikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:881:76: warning: 'atomm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              v_tally4(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS);
BUILDSTDERR:                                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:881:76: warning: 'atomk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::force_zeta(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double, double, double, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, int, double&, double, double, int, int, int, double, double, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:1794:48: warning: 'prady' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       prady  += 1.0 *  btor[2] * bbtor * att_eng;
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:1793:48: warning: 'pradx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       pradx  += 1.0 *  btor[1] * bbtor * att_eng;
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp: In member function 'double LAMMPS_NS::PairBOP::sigmaBo(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    ,ftmp[2],xtmp[0],xtmp[1],xtmp[2]);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1763:42: warning: 'dis_jk[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1]
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1763:62: warning: 'dis_jk[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1]
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1764:35: warning: 'dis_jk[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                          +dis_ik[2]*dis_jk[2])/(r_ik*r_jk);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1775:51: warning: 'r_jk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      dcA_ikj[2][1]=(-dis_ik[2]*r_ik*r_jk-cosAng_ikj
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1500:38: warning: 'temp_jk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              bt_sg[nb_jk].temp=temp_jk;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3641:30: warning: 'temp_ji' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                else if(temp_kk==temp_ji&&setting==0) {
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::direct(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, int, int, int, double, double, double, double, double, double, double, double, double&, double&, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2799:20: warning: 'dcurlji' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     smf1n += dcurlji*iq*(afbn-fafbnl)*esucon/r;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2802:20: warning: 'dcurlij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     smf1j += dcurlij*jq*(afbj-fafbnl)*esucon/r;
BUILDSTDERR:                     ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:192:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:469:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:470:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:472:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:787:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:205:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp: In member function 'virtual void LAMMPS_NS::PairEAMCD::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp:387:24: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair += D_i * rhojp * t1;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:194:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:210:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp:970:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp:974:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp: In member function 'void LAMMPS_NS::PairLCBOP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:987:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:993:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:994:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:995:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&gamma_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:996:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&A);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:997:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&B_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:998:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&B_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:999:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&alpha);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1000:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&beta_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1001:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&beta_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1002:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&d);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1003:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1004:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_4);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1005:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_6);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1006:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&L);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1007:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&kappa);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1008:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&R_0);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1009:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&R_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1010:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_0);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1011:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_1_LR);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1012:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_2_LR);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1013:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&v_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1014:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&v_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1015:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1016:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1017:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&lambda_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1018:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&lambda_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1019:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1020:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&delta);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1023:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1032:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(s,MAXLINE,fp);
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1039:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; }
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1046:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1052:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:579:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:580:60: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      while (line == strchr(line,'#')) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:596:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:614:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:650:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:881:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:262:7: warning: 'emb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (emb > epsilon) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally(i,i,nlocal,newton_pair,evdwl,0.0,0.0,delx,dely,delz);
BUILDSTDERR:                                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp: In member function 'int LAMMPS_NS::FixAtomSwap::attempt_semi_grand()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp:391:54: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          atom->v[i][0] *= sqrt_mass_ratio[itype][jtype];
BUILDSTDERR:                                                       ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp: In member function 'virtual void LAMMPS_NS::FixBondSwap::post_integrate()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:629:44: warning: 'jlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jangle = 0; jangle < num_angle[jlast]; jangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:607:44: warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jangle = 0; jangle < num_angle[jprev]; jangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:202:25: warning: 'jnext' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:618:44: warning: 'ilast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (iangle = 0; iangle < num_angle[ilast]; iangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:491:39: warning: 'iprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (iprev >= 0) iprevtag = tag[iprev];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:202:7: warning: 'inext' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:414:53: warning: 'jnextangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(jnextangletype,i,jnext,jlast) +
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:419:49: warning: 'jangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(jangletype,jprev,j,jnext) -
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:418:53: warning: 'inextangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(inextangletype,i,inext,ilast) -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:413:56: warning: 'iangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              delta += angle_eng(iangletype,iprev,i,jnext) +
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:457:37: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jbond = 0; jbond < num_bond[j]; jbond++)
BUILDSTDERR:                                      ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp: In member function 'virtual void LAMMPS_NS::FixTFMC::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp:255:36: warning: 'masstotal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      group->xcm(igroup,masstotal,cm);
BUILDSTDERR:                                     ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:350:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:354:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:355:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:383:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:384:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&max_cell_size,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:385:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:386:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:387:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp: In member function 'void LAMMPS_NS::Message::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp:64:3: warning: 'clientserver' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (clientserver == 1) {
BUILDSTDERR:    ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp: In member function 'double LAMMPS_NS::FixGCMC::energy_full()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp:2297:11: warning: 'imolecule' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (imolecule == molecule[j]) continue;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp: In member function 'void LAMMPS_NS::Server::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp:43:3: warning: 'protocol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (protocol == MD) {
BUILDSTDERR:    ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp: In member function 'void LAMMPS_NS::ServerMC::loop()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:116:28: warning: 'xold[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][2] = xold[2];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:115:28: warning: 'xold[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][1] = xold[1];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:114:28: warning: 'xold[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][0] = xold[0];
BUILDSTDERR:                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:15:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.h:300:57: warning: 'atomid' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else if (map_style == 2) return map_find_hash(global);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:42:10: note: 'atomid' was declared here
BUILDSTDERR:    tagint atomid;
BUILDSTDERR:           ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int sizeofint(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:559:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    while (size >= num && num_of_bits < 32) {
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int sizeofints(int, unsigned int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:600:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    while (bytes[num_of_bytes] >= num) {
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'void sendints(int*, int, int, unsigned int*, unsigned int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:654:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (num_of_bits >= num_of_bytes * 8) {
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:655:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (i = 0; i < num_of_bytes; i++) {
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:660:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (i = 0; i < num_of_bytes-1; i++) {
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int receivebits(int*, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:695:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (lastbits < num_of_bits) {
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int xdr3dfcoord(XDR*, float*, int*, float*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:397:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define LASTIDX (sizeof(magicints) / sizeof(int) - 1 )
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:935:23: note: in expansion of macro 'LASTIDX'
BUILDSTDERR:      while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:46:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MYMIN(a,b) ((a) < (b) ? (a) : (b))
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:939:14: note: in expansion of macro 'MYMIN'
BUILDSTDERR:      maxidx = MYMIN(LASTIDX, smallidx + 8) ;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:46:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MYMIN(a,b) ((a) < (b) ? (a) : (b))
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1115:14: note: in expansion of macro 'MYMIN'
BUILDSTDERR:      maxidx = MYMIN(LASTIDX, smallidx + 8) ;
BUILDSTDERR:               ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1141:54: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[2] = receivebits(buf, bitsizeint[2]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1140:54: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[1] = receivebits(buf, bitsizeint[1]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1139:54: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[0] = receivebits(buf, bitsizeint[0]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp: In member function 'virtual void LAMMPS_NS::FixDeposit::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp:529:56: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else atom->avec->create_atom(ntype+onemols[imol]->type[m],coords[m]);
BUILDSTDERR:                                                         ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp: In member function 'virtual void LAMMPS_NS::FixEvaporate::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp:324:31: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          } else if (me == proc && i == iatom) {
BUILDSTDERR:                                ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:322:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:326:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:327:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:328:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:329:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:330:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:360:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:361:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:362:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:363:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:373:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:377:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:378:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:379:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:380:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:381:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:382:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:414:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:415:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:416:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:417:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:418:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairNMCutCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:478:65: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) -
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:150:58: warning: 'rninv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                          r0n[itype][jtype]*rninv -
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:152:58: warning: 'rminv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                          r0m[itype][jtype]*rminv) -
BUILDSTDERR:                                                           ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:420:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:424:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:425:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:426:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:427:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:428:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:461:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:462:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:463:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:464:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:465:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:466:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:467:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairNMCutCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:553:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:553:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:556:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:551:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:563:65: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) -
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:186:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:191:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:196:50: warning: 'rninv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (mm[itype][jtype]*r0n[itype][jtype]*rninv -
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:197:50: warning: 'rminv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                 nn[itype][jtype]*r0m[itype][jtype]*rminv) - offset[itype][jtype];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:188:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:188:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:248:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:249:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:250:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k_ub[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:251:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r_ub[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp:196:70: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                                       ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp: In member function 'virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:249:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:250:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:251:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp:218:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp:219:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp: In member function 'virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp:218:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp:219:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp:292:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp:293:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:219:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:220:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:221:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:222:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp: In member function 'virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:228:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:229:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:230:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:231:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:232:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp:171:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp:172:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp:171:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp:172:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp: In member function 'virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:175:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&d0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:176:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:177:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp: In member function 'virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:170:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:171:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:172:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&lamda[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp: In member function 'virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:280:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:281:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:282:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:283:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&rc[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:284:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&u0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp:236:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp:237:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:428:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:429:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:430:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:431:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:432:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weightflag,sizeof(int),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:471:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:472:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:473:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:474:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:475:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weightflag,sizeof(int),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:332:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:333:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:334:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:327:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:328:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:329:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:322:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:323:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:324:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:325:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:326:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:334:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:335:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:336:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:337:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:338:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:339:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sign[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:340:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp:279:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp:280:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:208:15: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:207:18: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:                   ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:320:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:321:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:322:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingMorse::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:301:9: warning: 'donor_flag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (donor_flag == 0) type2param[i][j][k] = nparams;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:152:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingMorse::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:122:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual double LAMMPS_NS::PairHbondDreidingLJ::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:511:41: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:378:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:382:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:439:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_inner,sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual double LAMMPS_NS::PairHbondDreidingMorse::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:414:41: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulCharmm::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:501:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingLJ::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:374:9: warning: 'donor_flag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (donor_flag == 0) type2param[i][j][k] = nparams;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:167:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:200:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:133:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:133:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:436:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:440:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:473:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:620:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:624:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:662:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:668:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:533:34: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        philj6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:528:16: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);;
BUILDSTDERR:                 ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:195:42: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:193:47: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl12 = r6inv*lj3[itype][jtype]*r6inv -
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:479:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:506:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:507:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:508:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:509:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:510:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:512:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:377:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:376:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:304:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:300:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:337:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:336:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:264:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:260:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp: In member function 'virtual void LAMMPS_NS::ComputeDilatationAtom::compute_peratom()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp:116:52: warning: 'theta' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (mask[i] & groupbit) dilatation[i] = theta[i];
BUILDSTDERR:                                                     ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp.o
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:569:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:573:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:574:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:575:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:576:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:577:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:578:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_yieldstress[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:423:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:427:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kspring[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:428:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:429:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:430:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:498:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:499:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:500:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:501:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:502:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:551:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:555:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:556:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:557:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:558:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:559:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:560:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_lambdai[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:561:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_taubi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp: In member function 'virtual int LAMMPS_NS::FixQEq::pack_forward_comm(int, int*, double*, int, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp:490:10: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return m;
BUILDSTDERR:           ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp: In member function 'void LAMMPS_NS::FixPOEMS::readfile(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp:987:26: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (me == 0) fclose(fp);
BUILDSTDERR:                           ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp: In member function 'virtual void LAMMPS_NS::FixHyperGlobal::pre_reverse(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:307:20: warning: 'r0max' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fbiasr = fbias / r0max / rmax;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:307:34: warning: 'rmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fbiasr = fbias / r0max / rmax;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:228:18: warning: 'jmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,m,imax,jmax;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:228:13: warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,m,imax,jmax;
BUILDSTDERR:              ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp: In member function 'virtual void LAMMPS_NS::FixHyperLocal::pre_reverse(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp:480:27: warning: 'ijhalf' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      maxhalf[iold] = ijhalf;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp: In member function 'virtual void LAMMPS_NS::FixNEB::min_post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:45: warning: 'lenuntilIm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:45: warning: 'idealPos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:58: warning: 'meanDist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist);
BUILDSTDERR:                                                           ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp: In member function 'virtual void LAMMPS_NS::FixEHEX::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp:203:48: warning: 'id_shake' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       fshake = ((FixShake*) modify->fix[id_shake]);
BUILDSTDERR:                                                 ^
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In constructor 'LAMMPS_NS::FixRigid::FixRigid(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:580:51: warning: 'seed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (langflag) random = new RanMars(lmp,seed + me);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:397:30: warning: 'zflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][2] = zflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:396:30: warning: 'yflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][1] = yflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:395:30: warning: 'xflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][0] = xflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:359:34: warning: 'zflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (domain->dimension == 2 && zflag == 1.0)
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:365:30: warning: 'yflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fflag[m-1][1] = yflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:364:30: warning: 'xflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fflag[m-1][0] = xflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:225:32: warning: 'molecule' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (custom_flag) delete [] molecule;
BUILDSTDERR:                                 ^
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1483:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1478:23: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1462:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1406:50: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1405:60: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1405:50: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                   ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1628:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1615:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1577:40: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1 = x[i][1] + ybox*yprd + zbox*yz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1576:50: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1576:40: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                         ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::setup_bodies_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2224:34: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            radone = lbonus[line[i]].length;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::readfile(int, double*, double**, double**, double**, LAMMPS_NS::imageint*, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2297:67: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::setup_bodies_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2123:31: warning: 'inbody' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (infile && inbody[ibody]) continue;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2104:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2021:38: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          orient[i][0] = lbonus[line[i]].theta - theta_body;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2086:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2659:26: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (me == 0) fclose(fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1394:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1389:23: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1374:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1532:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1519:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In constructor 'LAMMPS_NS::FixRigidSmall::FixRigidSmall(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:515:57: warning: 'seed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (langflag) random = new RanMars(lmp,seed + comm->me);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::setup_bodies_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2380:34: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            radone = lbonus[line[i]].length;
BUILDSTDERR:                                   ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::readfile(int, double**, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2466:67: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::setup_bodies_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2264:31: warning: 'inbody' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (infile && inbody[ibody]) continue;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2242:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2157:38: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          orient[i][0] = lbonus[line[i]].theta - theta_body;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2224:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp: In member function 'virtual void LAMMPS_NS::PairSpinDmi::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:539:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:543:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&DM[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:544:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmx[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:545:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmy[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:546:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmz[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:547:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmx[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:548:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmy[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:549:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmz[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:550:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_dmi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp: In member function 'virtual void LAMMPS_NS::PairSpinDmi::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:584:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_dmi_global,sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:585:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:586:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp: In member function 'virtual void LAMMPS_NS::PairSpinExchange::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:506:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:510:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J1_mag[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:511:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:512:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:513:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:514:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_exchange[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp: In member function 'virtual void LAMMPS_NS::PairSpinExchange::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:545:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_exchange_global,sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:546:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:547:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp: In member function 'virtual void LAMMPS_NS::PairSpinMagelec::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:523:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:527:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&ME[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:528:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mex[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:529:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mey[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mez[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:531:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_magelec[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp: In member function 'virtual void LAMMPS_NS::PairSpinMagelec::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:561:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_magelec_global,sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:562:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:563:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp: In member function 'virtual void LAMMPS_NS::PairSpinNeel::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:695:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:699:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:700:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:701:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:702:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:703:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:704:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:705:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:706:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:707:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_neel[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp: In member function 'virtual void LAMMPS_NS::PairSpinNeel::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:741:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_neel_global,sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:742:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:743:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp: In constructor 'LAMMPS_NS::FixWallSRD::FixWallSRD(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp:67:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:477:9: warning: 'ielem' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      int ielem;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:723:53: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (time_guided) schedule_time_guided = endtime - starttime;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:521:12: note: 'starttime' was declared here
BUILDSTDERR:      double starttime, endtime;
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp: In member function 'void LAMMPS_NS::KimQuery::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:9: warning: variable 'varname' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:19: warning: variable 'function' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:30: warning: unused variable 'value' [-Wunused-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:                               ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::big_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2966:25: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        c1 = tbonus[tri[i]].c1;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2954:30: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        length = lbonus[line[i]].length;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2938:34: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::big_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3049:30: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        inertia = tbonus[tri[i]].inertia;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3036:40: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        biglist[k].theta = lbonus[line[i]].theta;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3024:34: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                   ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::reset_velocities()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1017:33: warning: 'dof_tstat' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        tbin = vbin[i].value[0]/(n-dof_tstat) * tfactor;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp: In member function 'virtual void LAMMPS_NS::FixPythonInvoke::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp:91:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject((PyObject*)pFunc, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp: In member function 'virtual void LAMMPS_NS::FixPythonInvoke::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp:108:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject((PyObject*)pFunc, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::parameterize()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2683:37: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double *c1 = tbonus[tri[i]].c1;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2703:41: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double length = lbonus[line[i]].length;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2700:46: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double *shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                               ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:146:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_init, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:164:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_initial_integrate, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::final_integrate()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:182:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_final_integrate, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::initial_integrate_respa(int, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:200:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_initial_integrate_respa, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::final_integrate_respa(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:219:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_final_integrate_respa, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::reset_dt()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:237:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_reset_dt, NULL);
BUILDSTDERR:               ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp: In member function 'int LAMMPS_NS::PythonImpl::create_entry(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp:410:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    else if (format && strlen(format) != ninput+noutput)
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::collisions_multi()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1548:33: warning: 'xbcollfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[2] = xbcollfirst[2];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1547:33: warning: 'xbcollfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[1] = xbcollfirst[1];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1546:33: warning: 'xbcollfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[0] = xbcollfirst[0];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1545:33: warning: 'xscollfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[2] = xscollfirst[2];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1544:33: warning: 'xscollfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[1] = xscollfirst[1];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1543:33: warning: 'xscollfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[0] = xscollfirst[0];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1551:29: warning: 'normfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[2] = normfirst[2];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1550:29: warning: 'normfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[1] = normfirst[1];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1549:29: warning: 'normfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[0] = normfirst[0];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1576:32: warning: 'typefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (collidestyle == SLIP && type == SPHERE)
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1581:33: warning: 'jfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          force_wall(v[i],vsnew,j);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp: In member function 'virtual void LAMMPS_NS::PythonImpl::invoke_function(int, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp:320:36: warning: 'pValue' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      PyTuple_SetItem(pArgs,i,pValue);
BUILDSTDERR:                                     ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp: In member function 'void LAMMPS_NS::ComputeVoronoi::processCell(voro::voronoicell_neighbor&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:516:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        for (j=0; j<narea.size(); ++j)
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:531:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (neighs != narea.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:548:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          for( j=0; j<vlist.size(); j+=vlist[j]+1 ) {
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:592:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (neighs != narea.size())
BUILDSTDERR:                                 ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'double LAMMPS_NS::ComputePressureBocs::get_cg_p_corr(double**, int, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:249:10: warning: 'correction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return correction;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'virtual double LAMMPS_NS::ComputePressureBocs::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:346:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'virtual void LAMMPS_NS::ComputePressureBocs::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:384:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function 'virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:295:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:296:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&Delta[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:297:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:685:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:832:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:837:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_cxst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:839:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:840:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:841:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:842:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:847:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:853:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:859:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:865:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:871:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&AA_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&BB_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:936:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:937:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:938:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:371:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:457:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:462:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa_dh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&qeff_dh_pf[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_dh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_dh_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_dh_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:499:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:831:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:991:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:996:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_cxst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1006:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1012:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1018:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1024:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1030:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst3p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst3p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1107:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:575:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:717:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:722:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:723:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:724:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_ss_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:725:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:726:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_ss_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:727:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:728:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:729:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_sb_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:730:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:731:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_sb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:732:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:733:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:734:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_bb_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:735:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:736:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_bb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:779:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:780:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:781:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:799:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:978:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:983:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:995:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1001:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb2_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1007:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb3_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1013:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1019:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb7_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1025:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb8_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1104:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:833:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:995:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1000:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1012:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1018:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1024:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1030:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1103:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:785:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:950:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:955:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_xst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:965:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:971:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst2_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:977:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst3_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:983:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:989:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst7_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:995:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst8_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1072:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:457:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:461:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:462:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:463:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&power[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:464:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:465:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:466:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&powerT[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:467:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cutT[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:470:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&sc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:474:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&kc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:512:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:513:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:514:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:34: warning: 'dQr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Q[j]    -= ( dQc - dQd + dQr );
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:28: warning: 'dQd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Q[j]    -= ( dQc - dQd + dQr );
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:28: warning: 'dQc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:352:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:356:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&A_att[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:357:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&B_rep[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:358:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:359:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:360:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_r[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:390:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:391:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:392:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:393:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:400:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:404:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:405:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:406:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&power[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:407:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:408:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cutcc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:410:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&kappa[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:411:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&epsilon[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:412:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&powercc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:448:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:449:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:450:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:451:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:335:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:336:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:337:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&repscale[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:383:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:387:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lj_type[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:388:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:389:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:390:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:420:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:421:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:422:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:423:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:474:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:478:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lj_type[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:479:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:513:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:514:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp: In function 'void write_group(FILE*, int, LAMMPS_NS::Atom*, LAMMPS_NS::Group*, int, int, int, FILE*, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp:133:25: warning: 'recvlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (num > 0) delete[] recvlist;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp: In member function 'void LAMMPS_NS::Group2Ndx::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp:167:80: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        write_group(fp,gid,atom,group,comm->me,comm->nprocs,world,screen,logfile);
BUILDSTDERR:                                                                                 ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp: In member function 'virtual void LAMMPS_NS::FixColvars::setup(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp:543:33: warning: unused variable 'id' [-Wunused-variable]
BUILDSTDERR:      std::vector<int>           &id = *(proxy->modify_atom_ids());
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp: In member function 'void LAMMPS_NS::Ndx2Group::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp:130:37: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          name = find_section(fp,NULL);
BUILDSTDERR:                                      ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:216:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:218:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:219:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:225:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:235:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:237:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp: In member function 'void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:435:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:437:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:438:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:444:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:472:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:474:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.h:17:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp: In member function 'virtual void LAMMPS_NS::FixRX::post_constructor()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pointers.h:35:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MAX(A,B) ((A) > (B) ? (A) : (B))
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:324:24: note: in expansion of macro 'MAX'
BUILDSTDERR:          tmpmaxstrlen = MAX(tmpmaxstrlen,strlen(word));
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp: In member function 'void LAMMPS_NS::FixRX::initSparse()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:549:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (sparseKinetics_inu[i][idx] >= nu_bin.size())
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:567:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (sparseKinetics_inu[i][idx] >= nu_bin.size())
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:583:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 1; i < nu_bin.size(); ++i)
BUILDSTDERR:                                      ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtonSSA::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:209:54: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                         tag[j]-tagprev);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:207:68: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:207:52: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:319:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:381:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:385:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:386:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:387:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:416:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:417:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:418:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:419:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:412:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:482:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:486:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:519:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:973:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:977:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1003:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1004:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1005:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1006:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:365:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:367:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:368:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:374:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:387:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:389:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:708:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:709:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:510:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:512:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:513:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:519:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:532:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:534:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:853:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:854:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:177:24: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          f[i][2] += delz*fpair;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:189:52: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (rho[i]*rho[i] < tb->innersq || rho[j]*rho[j] < tb->innersq)
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp: In member function 'void LAMMPS_NS::PairTableRX::getMixingWeights(int, double&, double&, double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:579:29: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = nMolecules2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:578:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = nMoleculesOld2;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:574:27: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = fraction2;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:573:33: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = fractionOld2;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:577:29: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = nMolecules1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:576:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = nMoleculesOld1;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:572:27: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = fraction1;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:571:33: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = fractionOld1;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'void LAMMPS_NS::PairExp6rx::getMixingWeights(int, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&) const':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1223:32: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1237:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1216:32: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1230:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1223:5: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1237:5: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1216:5: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1230:5: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){
BUILDSTDERR:      ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::getMixingWeights(int, double&, double&, double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1015:29: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = nMolecules2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1014:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = nMoleculesOld2;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1010:27: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = fraction2;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1009:33: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = fractionOld2;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1013:29: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = nMolecules1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1012:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = nMoleculesOld1;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1008:27: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = fraction1;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1007:33: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = fractionOld1;
BUILDSTDERR:                                  ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp: In member function 'int LAMMPS_NS::FixDrudeTransform<inverse>::pack_forward_comm(int, int*, double*, int, int*) [with bool inverse = false]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp:293:13: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              buf[m++] = x[j][2] + dz;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp: In member function 'int LAMMPS_NS::FixDrudeTransform<inverse>::pack_forward_comm(int, int*, double*, int, int*) [with bool inverse = true]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp:293:13: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:363:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:498:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&polar[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&thole[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:503:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:539:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&thole_global,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutTholeLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:671:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:664:78: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (drudetype[type[i]] != NOPOL_TYPE && drudetype[type[j]] != NOPOL_TYPE &&
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:666:27: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul += factor_e * dcoul;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:666:27: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:660:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:660:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:663:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:658:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:315:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:319:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&polar[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:320:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&thole[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:229:50: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  drudetype[type[j]] != NOPOL_TYPE && j != di_closest){
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:230:33: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:193:30: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:230:33: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:222:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:227:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:224:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:235:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:225:25: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:224:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:321:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:351:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&thole_global,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:352:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:353:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:354:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp.o
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:969:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:972:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:996:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:997:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:998:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:276:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:280:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:281:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:310:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:311:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:313:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:314:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:315:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairCoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:363:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                 ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:300:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:304:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:331:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:332:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:334:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:335:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:336:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:375:82: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:376:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:841:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:845:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:846:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:884:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:885:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:889:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:384:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:388:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:389:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:390:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:391:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:392:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:427:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:428:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:429:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:431:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:432:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:433:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:434:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:435:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:982:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:974:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:975:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:500:37: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (2.0/(denlj*sqrt(denlj)) - 3.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:495:78: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e *lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:143:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                                 ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:528:71: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:44: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:550:66: warning: 'fprefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:58: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:53: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:188:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:181:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:182:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:77:10: warning: unused variable 'fraction' [-Wunused-variable]
BUILDSTDERR:    double fraction;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:493:10: warning: unused variable 'fraction' [-Wunused-variable]
BUILDSTDERR:    double fraction,forcecoul,forcelj,phicoul,philj;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:401:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:405:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:406:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:407:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:408:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:442:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:443:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:444:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:446:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:447:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:448:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:449:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:450:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:524:37: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (2.0/(denlj*sqrt(denlj)) - 3.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:518:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:517:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:160:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:161:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2Soft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:323:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:327:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:328:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:329:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:330:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2Soft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:362:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:363:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:364:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:365:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:366:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:367:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:380:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:384:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:423:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:427:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:497:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:492:79: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:148:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:144:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                                 ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:797:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:801:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:802:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:838:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:839:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:843:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:658:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:662:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:663:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:664:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:665:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:698:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:699:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:701:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:702:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:703:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:704:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:928:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:920:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:921:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:756:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:524:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:530:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:493:71: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:44: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:510:66: warning: 'fprefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:58: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:53: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:396:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:395:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:323:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:319:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:413:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:316:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:320:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:321:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:322:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:323:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:324:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:176:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:169:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:170:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:461:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:462:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:463:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:464:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:465:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:364:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:363:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:291:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:287:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp:63:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for( int i = 0; i < parts.size(); ++i ){
BUILDSTDERR:                                     ^
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp: In constructor 'LAMMPS_NS::MEAM::MEAM(LAMMPS_NS::Memory*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp:46:156: warning: operation on '((LAMMPS_NS::MEAM*)this)->LAMMPS_NS::MEAM::Ec_meam[i][j]' may be undefined [-Wsequence-point]
BUILDSTDERR:        Ec_meam[i][j] = re_meam[i][j] = alpha_meam[i][j] = delta_meam[i][j] = Ec_meam[i][j] = ebound_meam[i][j] = attrac_meam[i][j] = repuls_meam[i][j] = 0.0;
BUILDSTDERR:                                                                                                                                                             ^
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp: In member function 'double LAMMPS_NS::MEAM::phi_meam(double, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp:446:21: warning: 'rho0_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rhobar2 = rho02 / rho_bkgd2 * G2;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp:445:21: warning: 'rho0_1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rhobar1 = rho01 / rho_bkgd1 * G1;
BUILDSTDERR:                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:394:13: warning: variable 'dp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:     double f,dp;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:375:18: warning: variable 'alm' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   double alp = al,alm = al;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:158:19: warning: variable 'dr' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x0,x1,dx,dr;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:187:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:203:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:246:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:306:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:329:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:331:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:334:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:343:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:345:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:358:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:109:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:119:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:123:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp: In member function 'void LAMMPS_NS::PairMEAMC::read_files(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp:589:69: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      meam_inst->meam_setup_param(which,value,nindex,index,&errorflag);
BUILDSTDERR:                                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::compute_x(const int*, const int* const*, double*, double*, double*, double*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:24: warning: unused variable 'mx' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:27: warning: unused variable 'itag' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:32: warning: unused variable 'jtag' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:10: warning: unused variable 'nbc' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:20: warning: unused variable 'tbl' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:30: warning: unused variable 'tbm' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:600:13: warning: unused variable 'lmax_local' [-Wunused-variable]
BUILDSTDERR:    const int lmax_local = lmax;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:609:10: warning: variable 't0' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double t0,t1;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:609:13: warning: variable 't1' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double t0,t1;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:618:18: warning: unused variable 'tsort' [-Wunused-variable]
BUILDSTDERR:    double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:618:42: warning: unused variable 'tlookup' [-Wunused-variable]
BUILDSTDERR:    double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:620:10: warning: unused variable 'ntsort' [-Wunused-variable]
BUILDSTDERR:    double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0;
BUILDSTDERR:           ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:620:36: warning: unused variable 'ntlookup' [-Wunused-variable]
BUILDSTDERR:    double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0;
BUILDSTDERR:                                     ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'virtual void LAMMPS_NS::PairMGPT::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:1838:9: warning: variable 'volpres_tag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      int volpres_tag = 0,precision_tag = 0,nbody_tag = 0;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:1838:25: warning: variable 'precision_tag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      int volpres_tag = 0,precision_tag = 0,nbody_tag = 0;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::hamltn_5_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::hamltn_7_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:227:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:228:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&kcost[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:229:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&ksint[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:230:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&theta[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:259:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&umin[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:260:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&a[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:261:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&cost[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:262:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&sint[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:263:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                                ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp:208:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp:209:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamma0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:234:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:235:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:236:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:237:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:240:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:241:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:242:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&N[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:235:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:236:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:237:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:238:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:180:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:181:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:182:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:182:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp: In member function 'virtual double LAMMPS_NS::ComputePressureGrem::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp:97:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:329:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:330:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                             ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:370:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:385:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(k[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:386:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(multiplicity[i],sizeof(int),nterms[i],fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:387:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp:322:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp:332:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(a[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp:329:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp:330:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:761:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:781:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(Ccoeff[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:782:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:783:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:784:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:785:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:786:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:787:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:788:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:789:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:790:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:576:13: warning: 'void tr_count(const double*, const double*, double*, const double*, double*, const double*, double*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void tr_count(const double * restrict A,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp:1026:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp:1027:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp: In member function 'virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp:1019:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp:1020:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp:506:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::read(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:2763:22: warning: variable 'edgeflag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int equivflag = 0, edgeflag = 0, bondflag = 0, customedgesflag = 0;
BUILDSTDERR:                       ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::dedup_mega_gloves(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1836:27: warning: 'dedup_size' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (int i = dedup_size-1; i > 0; --i) { //dedup_size
BUILDSTDERR:                            ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::limit_bond(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1997:79: warning: 'i_statted_tags' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (stabilization_flag == 1) i_statted_tags[atom->map(temp_limit_glove[i])] = 0;
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1974:15: warning: 'temp_limit_glove' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      delete [] temp_limit_glove;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::unlimit_bond()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:2032:57: warning: 'i_statted_tags' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (stabilization_flag == 1) i_statted_tags[i] = 1;
BUILDSTDERR:                                                          ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp.o
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:123:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:124:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:128:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:129:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:133:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:134:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:138:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:144:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:148:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:149:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:153:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:154:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:158:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:159:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:163:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:164:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:169:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:173:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:174:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:178:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:179:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:183:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:184:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:188:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:189:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:193:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:194:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:198:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:199:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:203:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:204:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:208:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:209:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:213:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:214:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:218:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:219:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:223:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:224:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:228:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:229:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp:252:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp:253:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp:306:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp:307:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:331:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:332:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:333:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:334:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:335:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&all[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp:331:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp:332:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp: In member function 'virtual void LAMMPS_NS::PairAGNI::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (evflag) ev_tally_xyz_full(i,0.0,0.0,fxtmp,fytmp,fztmp,delx,dely,delz);
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp: In member function 'void LAMMPS_NS::PairAGNI::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:462:70: warning: 'wantdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      } else if (params && (wantdata >=0) && (nwords == params[wantdata].numeta+3)) {
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:432:26: warning: 'curparam' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      } else if ((curparam >=0) && (nwords == 1) && (strcmp(words[0],"endVar") == 0)) {
BUILDSTDERR:                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:308:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:312:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:313:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:314:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:315:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:344:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:345:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:346:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:347:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:287:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rme[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:288:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmae[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:289:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:316:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:317:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:318:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:304:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmae[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:305:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:331:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:332:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:333:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp: In member function 'void LAMMPS_NS::PairE3B::presetParam(int, bool&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp:619:17: warning: 'lconv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bondL *= lconv*BOND_DELTA;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp:613:14: warning: 'econv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    e2 *= econv;
BUILDSTDERR:               ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:308:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:312:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&hgauss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:313:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rmh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:314:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmah[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:315:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:344:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:345:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:346:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:307:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:311:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&aparm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:312:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bparm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:313:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:314:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:341:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:833:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:837:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:838:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:872:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:873:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJExpandCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:969:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:961:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:961:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:964:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:959:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:315:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:319:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:320:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:321:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:322:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:349:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:489:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:493:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&scale[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:526:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:280:25: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:279:18: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rsq*rcutlj2inv+
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:37: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:270:38: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:29: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:45: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:270:46: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:37: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:49: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:29: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:277:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:531:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:561:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:558:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:188:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:193:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:197:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:190:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:190:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:444:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:450:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:480:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:644:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:647:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:653:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:660:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:664:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual double LAMMPS_NS::PairLJSFDipoleSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:625:17: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:624:10: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        rsq*rcutlj2inv+
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:622:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:29: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:615:30: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:21: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:21: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:37: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:615:38: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:473:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:605:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:611:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:617:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:621:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(line, MAXLINE, fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:311:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:315:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:316:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:317:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:318:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:319:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rr[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:320:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:352:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:353:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sscale,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:354:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dscale,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:355:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:356:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:277:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:281:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:282:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:283:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:284:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:311:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:312:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:699:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:704:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:705:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:733:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:734:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bptype,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:735:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&btype,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:736:33: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&min,sizeof(int),1,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:737:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&midpoint,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:738:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&exclude,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:388:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:389:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:390:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:391:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:392:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k5[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:393:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k6[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:395:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:396:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:397:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:399:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:400:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:401:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:402:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:336:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&th0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:180:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:165:33: warning: 'r32inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fpair = forcebuck6d * r32inv;
BUILDSTDERR:                                  ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp:319:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:419:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:423:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha_ij[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:461:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&vdwl_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:193:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] -
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:195:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:188:51: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:452:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:456:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha_ij[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:495:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&vdwl_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&coul_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairBuck6dCoulGaussDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:558:63: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   rsq*f_shift_ij[itype][jtype]);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:557:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] -
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:552:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck6d = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairBuck6dCoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:71: warning: 'ealpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:66: warning: 'erfa' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:608:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck6d = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:72: warning: 'erfa' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:77: warning: 'ealpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:207:51: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                    ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp: In function 'int get_neighbours(void*, size_t, size_t, int, size_t*, int32_t*, double (*)[3])':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp:191:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (atom_index < data->nlocal) {
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp:205:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (j == atom_index)
BUILDSTDERR:               ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp: In member function 'void LAMMPS_NS::FixPhonon::GaussJordan(int, std::complex<double>*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp:788:14: warning: 'irow' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,icol,irow,j,k,l,ll,idr,idc;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp:827:22: warning: 'icol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      idr = icol*n+icol;
BUILDSTDERR:                       ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReax::pertype_parameters(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp:219:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(pf,"%d %lg %lg %lg",&itype,&v1,&v2,&v3);
BUILDSTDERR:                                                      ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReax::pre_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp:513:22: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      qeq_time = t_end - t_start;
BUILDSTDERR:                       ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp: In member function 'virtual void LAMMPS_NS::PairReaxC::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp:543:31: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      data->timing.nbrs = t_end - t_start;
BUILDSTDERR:                                ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp: In function 'char Read_Control_File(char*, control_params*, output_controls*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp:119:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp: In function 'char Read_Force_Field(FILE*, reax_interaction*, control_params*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:54:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:57:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:76:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:88:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:93:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:94:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:95:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:148:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:174:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:193:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:212:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:232:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( s, MAX_LINE, fp );
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:317:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:327:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:331:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:358:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAX_LINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:479:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:484:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:540:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:545:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:598:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:603:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:669:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:679:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Tridiagonal_Solve(const double*, const double*, double*, double*, double*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:40:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for(i = 1; i < n; i++){
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Natural_Cubic_Spline(LAMMPS_NS::Error*, const double*, const double*, cubic_spline_coef*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:67:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 2; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:71:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:75:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-2; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:79:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:86:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i ){
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Complete_Cubic_Spline(LAMMPS_NS::Error*, const double*, const double*, double, double, cubic_spline_coef*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:117:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:121:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:125:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 0; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:130:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:135:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i ){
BUILDSTDERR:                    ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp: In member function 'void LAMMPS_NS::FixRigidMeso::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:337:50: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:336:60: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:336:50: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                   ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp: In member function 'void LAMMPS_NS::FixRigidMeso::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:457:40: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1 = x[i][1] + ybox*yprd + zbox*yz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:456:50: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:456:40: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp: In member function 'virtual void LAMMPS_NS::FixMesoMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:709:61: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:678:61: warning: 'dy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:435:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:438:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:489:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);  if (verbose) printf ("%s",ptr);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:493:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:501:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:510:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:528:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:542:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:565:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);  if (verbose) printf ("%s",ptr);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:568:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:621:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:633:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:655:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:668:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:675:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:695:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:698:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:708:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:719:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:722:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:727:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:735:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:738:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:745:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:748:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:758:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:761:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:766:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:792:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:795:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:803:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:813:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:647:61: warning: 'dx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx;
BUILDSTDERR:                                                              ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp: In constructor 'LAMMPS_NS::FixMesoMove::FixMesoMove(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:174:24: warning: 'iarg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (strcmp(arg[iarg],"units") == 0) {
BUILDSTDERR:                         ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:694:3: warning: 'test' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (test == 0) {
BUILDSTDERR:    ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'void LAMMPS_NS::PairSMTBQ::tabqeq()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:1458:70: warning: 'bCoeff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:1458:37: warning: 'aCoeff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r);
BUILDSTDERR:                                      ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'void LAMMPS_NS::PairSMTBQ::Charge()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:2594:61: warning: 'gp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      QOxInit=max(QOxInit, -0.98* params[1].qform *nQEqcall[gp]/nQEqaall[gp])   ;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:2813:24: warning: 't_init' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      dt = t_end - t_init;
BUILDSTDERR:                         ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp: In member function 'virtual void LAMMPS_NS::ComputePressureUef::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp:141:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp: In member function 'virtual void LAMMPS_NS::AngleCross::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:282:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kss[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:283:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kbs0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:284:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kbs1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:285:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r00[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:286:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r01[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:287:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp: In member function 'virtual void LAMMPS_NS::BondMM3::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp:182:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp:183:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp: In member function 'virtual void LAMMPS_NS::AngleMM3::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp:229:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp:230:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistHarm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp:261:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp:262:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp: In member function 'virtual void LAMMPS_NS::ImproperSQDistHarm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp:261:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp:262:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:525:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:529:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:531:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:532:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:565:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:566:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:567:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&truncw,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:568:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:569:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:570:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:571:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:572:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:525:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:529:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:531:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:532:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:565:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:566:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:567:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&truncw,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:568:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:569:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:570:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:571:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:572:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJSwitch3CoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:660:19: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      forcelj = expb*lj1[itype][jtype]*r-6.0*lj4[itype][jtype]*r6inv;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:694:36: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    fforce = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:677:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:668:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:668:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:671:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:666:32: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc1;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:684:7: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:        ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairMM3Switch3CoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:679:17: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:695:36: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    fforce = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:679:35: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:670:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:670:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:195:30: warning: 'erfc2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:186:36: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc1;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:195:30: warning: 'prefactor2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:191:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:213:41: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:196:24: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:203:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:188:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:188:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:673:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:668:32: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc1;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:685:7: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:199:23: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:198:30: warning: 'erfc2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:189:36: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc1;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:198:30: warning: 'prefactor2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:194:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:215:41: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:199:41: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:205:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:191:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:191:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp: In member function 'void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp:140:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type];
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp: In member function 'void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp:140:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp: In member function 'void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp:144:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type];
BUILDSTDERR:          ^
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp: In member function 'void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp:144:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp: In member function 'void LAMMPS_NS::BondQuarticOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp:152:26: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (rsq < TWO_1_3) ebond += 4.0*sr6*(sr6-1.0) + 1.0;
BUILDSTDERR:                           ^
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp: In member function 'void LAMMPS_NS::BondQuarticOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp:152:26: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReaxOMP::pre_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp:351:22: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      qeq_time = t_end - t_start;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:235:7: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:235:7: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp.o
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:50:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:49:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:49:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:122:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:120:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:50:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:120:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:50:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:120:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:118:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:51:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:118:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:51:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:114:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:112:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:51:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:112:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:51:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:51:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:51:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:118:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:116:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:50:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:116:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:50:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:127:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:125:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:54:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:125:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:54:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:125:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:123:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:123:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:120:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:149:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:50:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:149:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:50:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:124:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:50:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:122:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:49:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:122:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:49:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:121:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:156:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:50:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:156:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:50:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:134:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:132:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:132:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:122:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:56:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:120:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:55:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:120:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:55:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:114:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:53:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:112:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:52:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:112:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:52:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:132:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:130:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,which,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:130:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,which,imol,iatom;
BUILDSTDERR:                                          ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:149:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:56:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:147:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:147:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:166:55: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:191:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:58:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:95:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:192:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:190:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:156:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:154:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:154:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:173:55: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:198:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:57:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:94:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:81:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:151:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:193:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:193:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:167:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:237:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:57:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:94:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:238:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:236:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:146:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:57:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:144:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:47: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:144:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:42: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:161:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:33: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:185:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:59:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:98:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:186:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:184:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:164:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:58:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:162:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:57: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:162:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:52: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:180:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:43: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:204:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:60:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:99:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:205:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:203:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:177:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:177:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp: In member function 'void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:147:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = epsilon[itype][jtype]*
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:145:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp: In member function 'void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:147:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = epsilon[itype][jtype]*
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:145:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:157:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:154:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:157:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:154:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv;
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:160:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:160:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:181:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:174:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:181:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:174:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:180:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:180:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp: In member function 'void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:147:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp: In member function 'void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:147:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp: In member function 'void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a * tb->e[itable] + b * tb->e[itable+1] +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:185:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp: In member function 'void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a * tb->e[itable] + b * tb->e[itable+1] +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:185:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp: In member function 'void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp: In member function 'void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:170:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:171:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:170:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:171:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:211:19: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR,
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fztmp += delz*fpair;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:211:19: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR,
BUILDSTDERR:                    ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fztmp += delz*fpair;
BUILDSTDERR:        ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:252:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:259:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:252:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:259:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:179:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:179:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:174:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:169:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:174:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:169:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:186:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:191:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:195:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:186:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:191:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:195:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:186:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:181:15: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:190:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:186:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:181:15: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:190:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:461:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:466:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:461:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:466:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:415:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:411:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:438:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:443:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:438:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:443:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:415:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:411:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_inner(int, int, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1335:28: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1331:28: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1304:28: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1300:28: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_middle(int, int, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1597:28: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1593:28: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1566:28: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1562:28: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp: In member function 'void LAMMPS_NS::PairAIREBOOMP::TORSION_thr(int, int, int, int, double*, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:999:77: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ev_tally4_thr(this,i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl,thr);
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp: In member function 'void LAMMPS_NS::PairAIREBOOMP::FLJ_thr(int, int, int, int, int, double*, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:569:21: warning: 'dwij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair = dC*dwij / rij;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:32: warning: 'dwmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:33: warning: 'wmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:27: warning: 'dwkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:27: warning: 'wkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:584:27: warning: 'dwkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:580:28: warning: 'wkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkjS / rikS;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:603:22: warning: 'dwikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:22: warning: 'wikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:45: warning: 'rmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:45: warning: 'rkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:584:40: warning: 'rkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:603:45: warning: 'rikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:639:84: warning: 'atomm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              v_tally4_thr(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS,thr);
BUILDSTDERR:                                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:639:84: warning: 'atomk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:167:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:187:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:200:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair += D_i * rhojp * t1;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:167:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:189:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:205:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:404:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:400:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:375:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:371:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:243:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (drudetype[type[i]] != NOPOL_TYPE &&
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:240:15: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:237:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:242:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:250:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:243:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (drudetype[type[i]] != NOPOL_TYPE &&
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:240:15: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:237:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:242:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:250:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:157:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:154:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:157:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:154:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:179:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:173:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:179:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:173:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp: In member function 'void LAMMPS_NS::PairAGNIOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (EVFLAG) ev_tally_xyz_full_thr(this,i,0.0,0.0,
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:419:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:415:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:390:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:386:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp: In member function 'virtual void LAMMPS_NS::PairReaxCOMP::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp:226:31: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      data->timing.nbrs = t_end - t_start;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp: In function 'int Init_ListsOMP(reax_system*, control_params*, simulation_data*, storage*, reax_list**, mpi_datatypes*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp:56:12: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    MPI_Comm comm;
BUILDSTDERR:             ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  ecoul = prefactor*erfc;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:17: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:40: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  ecoul = prefactor*erfc;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:17: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:40: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:409:23: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:405:23: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:432:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:437:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:432:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:437:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:409:23: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:405:23: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp: In member function 'void LAMMPS_NS::PairBeckGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp:240:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp: In member function 'void LAMMPS_NS::PairBornGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp:242:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:281:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:278:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:278:72: warning: 'v_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:282:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp:237:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp:249:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp:249:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp: In member function 'void LAMMPS_NS::PairDPDGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp:405:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp: In member function 'void LAMMPS_NS::PairGaussGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp:230:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJ96CutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp:226:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCubicGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:234:40: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:231:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:238:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp:236:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp:248:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:252:72: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:252:54: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:255:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:282:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:269:28: warning: 'forcecoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:276:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:282:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp: In member function 'void LAMMPS_NS::PairLJExpandGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp:239:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp: In member function 'void LAMMPS_NS::PairLJGromacsGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp:235:71: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp:241:74: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                           ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairMIECutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp:225:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp: In member function 'void LAMMPS_NS::PairMorseGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp:221:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp: In member function 'void LAMMPS_NS::PairSoftGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp:232:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp: In member function 'void LAMMPS_NS::PairTableGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:333:49: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:333:22: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:330:45: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:338:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp: In member function 'void LAMMPS_NS::PairUFMGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp:235:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp: In member function 'void LAMMPS_NS::PairYukawaGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp:224:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp: In member function 'void LAMMPS_NS::PairZBLGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp:232:59: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp:237:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp: In member function 'void LAMMPS_NS::PairGayBerneGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp:335:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp:338:63: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                        -r12[0],-r12[1],-r12[2]);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp: In member function 'void LAMMPS_NS::PairRESquaredGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp:310:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp:313:73: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                        fforce[2],-r12[0],-r12[1],-r12[2]);
BUILDSTDERR:                                                                          ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp: In member function 'void LAMMPS_NS::PairLJClass2GPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp:223:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:272:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:273:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:276:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:276:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp: In member function 'void LAMMPS_NS::PairColloidGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp:302:22: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        f[i][2] += delz*fpair;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp:298:36: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (eflag) evdwl *= factor_lj;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp: In member function 'void LAMMPS_NS::PairYukawaColloidGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp:235:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:325:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:326:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:330:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:329:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:284:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:281:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:281:72: warning: 'v_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:285:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairCoulLongCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:306:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:311:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:308:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:308:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:353:34: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:351:35: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:349:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:349:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:353:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:358:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:70: warning: 'd2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:62: warning: 'd1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:54: warning: 'd0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:47: warning: 'b2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:39: warning: 'b1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:31: warning: 'b0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:70: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:62: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:54: warning: 'g0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:417:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:282:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:287:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:286:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:281:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:286:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:283:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:283:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:274:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:275:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:279:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:279:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:305:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:310:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:314:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:317:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:307:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:307:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:322:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:326:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:319:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:319:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:326:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:278:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:287:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:280:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:293:70: warning: 'ecoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,ecoul,fpair,delx,dely,delz);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:293:70: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:280:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:376:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:377:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:378:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:379:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:404:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:426:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp:433:55: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (me == 0) grab(fptr,file->nr,&file->rhor[i][1]);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:442:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJExpandCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:311:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:316:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:320:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:313:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:313:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:388:25: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:387:18: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rsq*rcutlj2inv +
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:35: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:378:36: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv * pqfac * pidotr;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:29: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:43: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:378:44: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv * pqfac * pidotr;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:37: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:49: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:385:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) +
BUILDSTDERR:                           ^
[100%] Linking CXX shared library liblammps_mpich.so
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/lammps.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -shared -Wl,-soname,liblammps_mpich.so.0 -o liblammps_mpich.so.0 @CMakeFiles/lammps.dir/objects1.rsp libmpi_stubs.a -lfftw3 -lpython3.6m -ljpeg -lpng -lz -lvoro++ -lkim-api libcsnompi.a -lm libpoems.a libatc.a libcolvars.a libh5md.a libgpu.a -lopenblas -lhdf5 -lsz -lz -ldl -lm -lOpenCL 
/usr/bin/cmake3 -E cmake_symlink_library liblammps_mpich.so.0 liblammps_mpich.so.0 liblammps_mpich.so
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[100%] Built target lammps
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/lmp.dir/DependInfo.cmake --color=
Scanning dependencies of target lmp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[100%] Building CXX object CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp
[100%] Linking CXX executable lmp_mpich
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -rdynamic CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o  -o lmp_mpich -Wl,-rpath,/builddir/build/BUILD/lammps-stable_5Jun2019/mpich: liblammps_mpich.so.0 libmpi_stubs.a -lfftw3 -lpython3.6m -ljpeg -lpng -lvoro++ -lkim-api libcsnompi.a -lm libpoems.a libatc.a -lopenblas libcolvars.a libh5md.a -lhdf5 -lsz -lz -ldl -lm libgpu.a -lOpenCL 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[100%] Built target lmp
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles 0
+ popd
~/build/BUILD/lammps-stable_5Jun2019
+ test -n mpich
+ module unload mpi/mpich-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh unload mpi/mpich-aarch64
+ eval MANPATH=/usr/share/man:/usr/local/share/man ';export' 'MANPATH;PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;PKG_CONFIG_PATH=/usr/lib64/pkgconfig:/usr/share/pkgconfig' ';export' 'PKG_CONFIG_PATH;unset' 'LD_LIBRARY_PATH;unset' 'LOADEDMODULES;unset' 'MPI_BIN;unset' 'MPI_COMPILER;unset' 'MPI_FORTRAN_MOD_DIR;unset' 'MPI_HOME;unset' 'MPI_INCLUDE;unset' 'MPI_LIB;unset' 'MPI_MAN;unset' 'MPI_PYTHON_SITEARCH;unset' 'MPI_SUFFIX;unset' 'MPI_SYSCONFIG;unset' 'PYTHONPATH;unset' '_LMFILES_;'
BUILDSTDERR: ++ MANPATH=/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/pkgconfig:/usr/share/pkgconfig
BUILDSTDERR: ++ export PKG_CONFIG_PATH
BUILDSTDERR: ++ unset LD_LIBRARY_PATH
BUILDSTDERR: ++ unset LOADEDMODULES
BUILDSTDERR: ++ unset MPI_BIN
BUILDSTDERR: ++ unset MPI_COMPILER
BUILDSTDERR: ++ unset MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ unset MPI_HOME
BUILDSTDERR: ++ unset MPI_INCLUDE
BUILDSTDERR: ++ unset MPI_LIB
BUILDSTDERR: ++ unset MPI_MAN
BUILDSTDERR: ++ unset MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ unset MPI_SUFFIX
BUILDSTDERR: ++ unset MPI_SYSCONFIG
BUILDSTDERR: ++ unset PYTHONPATH
BUILDSTDERR: ++ unset _LMFILES_
+ for mpi in ''\'''\''' mpich openmpi
+ test -n openmpi
+ module load mpi/openmpi-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh load mpi/openmpi-aarch64
+ eval LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/openmpi-aarch64' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/openmpi/bin' ';export' 'MPI_BIN;MPI_COMPILER=openmpi-aarch64' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-aarch64' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/openmpi' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/openmpi-aarch64' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/openmpi/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/openmpi-aarch64' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_openmpi' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/openmpi-aarch64' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/openmpi-aarch64' ';export' '_LMFILES_;'
BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export LD_LIBRARY_PATH
BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-aarch64
BUILDSTDERR: ++ export LOADEDMODULES
BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin
BUILDSTDERR: ++ export MPI_BIN
BUILDSTDERR: ++ MPI_COMPILER=openmpi-aarch64
BUILDSTDERR: ++ export MPI_COMPILER
BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-aarch64
BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi
BUILDSTDERR: ++ export MPI_HOME
BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-aarch64
BUILDSTDERR: ++ export MPI_INCLUDE
~/build/BUILD/lammps-stable_5Jun2019/openmpi ~/build/BUILD/lammps-stable_5Jun2019
BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export MPI_LIB
BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-aarch64
BUILDSTDERR: ++ export MPI_MAN
BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ MPI_SUFFIX=_openmpi
BUILDSTDERR: ++ export MPI_SUFFIX
BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-aarch64
BUILDSTDERR: ++ export MPI_SYSCONFIG
BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export PYTHONPATH
BUILDSTDERR: ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-aarch64
BUILDSTDERR: ++ export _LMFILES_
+ mkdir -p openmpi
+ pushd openmpi
+ cp -al ../lammps-testing-827be7af84ca100d394ea1cf6d3bc49f6a8eef92 tests/
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  '
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  '
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
BUILDSTDERR: ++ test -n openmpi
BUILDSTDERR: ++ echo -DBUILD_MPI=OFF -DPKG_MPIIO=OFF
+ /usr/bin/cmake3 -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake -DBUILD_LIB=ON -DPKG_PYTHON=ON -DPKG_VORONOI=ON -DPKG_USER-ATC=ON -DPKG_USER-H5MD=ON -DPKG_KIM=ON -DENABLE_TESTING=ON -DPYTHON_INSTDIR=/usr/lib/python3.6/site-packages -DCMAKE_INSTALL_SYSCONFDIR=/etc -DPKG_GPU=ON -DGPU_API=OpenCL -DBUILD_OMP=ON -DFFT=FFTW3 -DPKG_USER-INTEL=OFF -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DLAMMPS_MACHINE=openmpi -DLAMMPS_LIB_SUFFIX=openmpi -DCMAKE_INSTALL_MANDIR=/usr/share/man/openmpi-aarch64 -DBUILD_MPI=ON -DPKG_MPIIO=ON '-DCMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags' '-DCMAKE_SHARED_LINKER_FLAGS=-Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags' -DBUILD_MPI=OFF -DPKG_MPIIO=OFF -DLAMMPS_TESTING_SOURCE_DIR=/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/tests ../cmake
loading initial cache file ../cmake/presets/all_on.cmake
loading initial cache file ../cmake/presets/nolib.cmake
-- The CXX compiler identification is GNU 4.8.5
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE) 
-- Running check for auto-generated files from make-based build system
-- The C compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Running test discovery...
-- Found 53 tests.
-- Found OpenMP_C: -fopenmp (found version "3.1") 
-- Found OpenMP_CXX: -fopenmp (found version "3.1") 
-- Found OpenMP: TRUE (found version "3.1")  
-- Looking for C++ include omp.h
-- Looking for C++ include omp.h - found
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") 
-- Checking for module 'fftw3'
--   Found fftw3, version 3.3.3
-- Found FFTW3: /usr/lib64/libfftw3.so  
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libopenblas.so  
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Found PythonLibs: /usr/lib64/libpython3.6m.so (found version "3.6.8") 
-- Found JPEG: /usr/lib64/libjpeg.so (found version "62") 
-- Found PNG: /usr/lib64/libpng.so (found version "1.5.13") 
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") 
-- Found GZIP: /usr/bin/gzip  
-- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) 
-- Found VORO: /usr/lib64/libvoro++.so  
-- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR) 
-- Checking for module 'libkim-api>=2.0'
--   Found libkim-api, version 2.0.2
-- Found KIM-API: kim-api  
-- Looking for C++ include cmath
-- Looking for C++ include cmath - found
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.12")  
-- Looking for CL_VERSION_2_2
-- Looking for CL_VERSION_2_2 - found
-- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") 
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/atom_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/beck_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/born_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/born_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/born_coul_long_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/born_coul_wolf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/born_coul_wolf_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/buck_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/buck_coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/buck_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/charmm_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/colloid_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/coul_debye_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/coul_dsf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/coul_long_cs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/device_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/dipole_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/dipole_lj_sf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/dipole_long_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/dpd_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/eam_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/ellipsoid_nbor_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/gauss_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj96_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_class2_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_coul_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_coul_debye_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_coul_msm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_cubic_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_dsf_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_expand_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_expand_coul_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_gromacs_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_sdk_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/lj_sdk_long_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/mie_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/morse_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/neighbor_cpu_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/neighbor_gpu_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/pppm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/soft_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/sw_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/table_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/ufm_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/vashishta_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/yukawa_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/yukawa_colloid_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/zbl_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/gayberne_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/gayberne_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/re_squared_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/re_squared_lj_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/tersoff_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/tersoff_zbl_cl.h...
BUILDSTDERR: Creating /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu/tersoff_mod_cl.h...
-- Generating style_angle.h...
-- Generating style_atom.h...
-- Generating style_body.h...
-- Generating style_bond.h...
-- Generating style_command.h...
-- Generating style_compute.h...
-- Generating style_dihedral.h...
-- Generating style_dump.h...
-- Generating style_fix.h...
-- Generating style_improper.h...
-- Generating style_integrate.h...
-- Generating style_kspace.h...
-- Generating style_minimize.h...
-- Generating style_nbin.h...
-- Generating style_npair.h...
-- Generating style_nstencil.h...
-- Generating style_ntopo.h...
-- Generating style_pair.h...
-- Generating style_reader.h...
-- Generating style_region.h...
-- Generating packages_angle.h...
-- Generating packages_atom.h...
-- Generating packages_body.h...
-- Generating packages_bond.h...
-- Generating packages_command.h...
-- Generating packages_compute.h...
-- Generating packages_dihedral.h...
-- Generating packages_dump.h...
-- Generating packages_fix.h...
-- Generating packages_improper.h...
-- Generating packages_integrate.h...
-- Generating packages_kspace.h...
-- Generating packages_minimize.h...
-- Generating packages_nbin.h...
-- Generating packages_npair.h...
-- Generating packages_nstencil.h...
-- Generating packages_ntopo.h...
-- Generating packages_pair.h...
-- Generating packages_reader.h...
-- Generating packages_region.h...
-- Generating lmpinstalledpkgs.h...
-- Found PythonInterp: /usr/bin/python3.6 (found version "3.6.8") 
-- Building package: ASPHERE
-- Building package: BODY
-- Building package: CLASS2
-- Building package: COLLOID
-- Building package: CORESHELL
-- Building package: DIPOLE
-- Building package: GRANULAR
-- Building package: KSPACE
-- Building package: MANYBODY
-- Building package: MC
-- Building package: MESSAGE
-- Building package: MISC
-- Building package: MOLECULE
-- Building package: PERI
-- Building package: POEMS
-- Building package: QEQ
-- Building package: REPLICA
-- Building package: RIGID
-- Building package: SHOCK
-- Building package: SPIN
-- Building package: SNAP
-- Building package: SRD
-- Building package: KIM
-- Building package: PYTHON
-- Building package: VORONOI
-- Building package: USER-ATC
-- Building package: USER-BOCS
-- Building package: USER-CGDNA
-- Building package: USER-MESO
-- Building package: USER-CGSDK
-- Building package: USER-COLVARS
-- Building package: USER-DIFFRACTION
-- Building package: USER-DPD
-- Building package: USER-DRUDE
-- Building package: USER-EFF
-- Building package: USER-FEP
-- Building package: USER-H5MD
-- Building package: USER-MANIFOLD
-- Building package: USER-MEAMC
-- Building package: USER-MGPT
-- Building package: USER-MISC
-- Building package: USER-MOFFF
-- Building package: USER-PHONON
-- Building package: USER-PTM
-- Building package: USER-QTB
-- Building package: USER-REAXC
-- Building package: USER-SDPD
-- Building package: USER-SMTBQ
-- Building package: USER-SPH
-- Building package: USER-TALLY
-- Building package: USER-UEF
-- Building package: USER-YAFF
-- Building package: USER-OMP
-- Building package: OPT
-- Building package: GPU
-- The following packages have been found:
 * OpenMP
 * FFTW3
 * LAPACK
 * Threads
 * BLAS
 * PythonLibs
 * JPEG
 * PNG
 * ZLIB
 * VORO
 * PkgConfig
 * KIM-API
 * HDF5
 * OpenCL
 * PythonInterp
-- <<< Build configuration >>>
   Build type       
   Install path     /usr
   Compilers and Flags:
   C++ Compiler     /usr/bin/c++
       Type         GNU
       Version      4.8.5
   C++ Flags        -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp 
   Defines          LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;FFT_FFTW;LMP_PYTHON;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LMP_USER_OMP
-- C Compiler /usr/bin/cc
     Type     GNU
     Version  4.8.5
     C Flags  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp 
-- Linker flags:
   Executable      -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags
-- Shared libraries  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags
-- Link libraries: mpi_stubs;/usr/lib64/libfftw3.so;/usr/lib64/libpython3.6m.so;/usr/lib64/libjpeg.so;/usr/lib64/libpng.so;/usr/lib64/libz.so;/usr/lib64/libvoro++.so;-lkim-api;cslib;m;poems;atc;colvars;h5md;gpu
-- GPU Api: OPENCL
-- OCL Tune: GENERIC
-- GPU Precision: MIXED
-- Using FFTW3 as FFT
-- Configuring done
-- Generating done
BUILDSTDERR: CMake Warning:
BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     LIB_SUFFIX
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi
+ /usr/bin/make -j4
/usr/bin/cmake3 -S/builddir/build/BUILD/lammps-stable_5Jun2019/cmake -B/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/depend
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/msi2lmp.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/mpi_stubs.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/colvars.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/poems.dir/DependInfo.cmake --color=
Scanning dependencies of target mpi_stubs
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  0%] Building C object CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o
Scanning dependencies of target msi2lmp
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c
Scanning dependencies of target poems
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c
Scanning dependencies of target colvars
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  0%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp
[  0%] Linking C static library libmpi_stubs.a
/usr/bin/cmake3 -P CMakeFiles/mpi_stubs.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/mpi_stubs.dir/link.txt --verbose=1
/usr/bin/ar qc libmpi_stubs.a  CMakeFiles/mpi_stubs.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS/mpi.c.o
/usr/bin/ranlib libmpi_stubs.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  0%] Built target mpi_stubs
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp
[  0%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c: In function 'ReadCarFile':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:101:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAX_LINE_LENGTH,CarF); /* Read header line */
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:108:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF); /* Comment line */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:109:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF); /* Date stamp */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:110:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fscanf(CarF,"%*s %lf %lf %lf %lf %lf %lf %*s",
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:124:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH, CarF); /* Comment line */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:125:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH, CarF); /* Date Stamp */
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:146:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:180:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:189:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(CarF,"%s %lf %lf %lf %*s %d %s %s %lf",
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:209:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c:210:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAX_LINE_LENGTH,CarF);
BUILDSTDERR:           ^
[  0%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c
[  1%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o
[  1%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c: In function 'SearchAndFill':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:114:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:119:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:121:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c:223:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( line, MAX_LINE_LENGTH, FrcF);
BUILDSTDERR:           ^
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp
[  2%] Building C object CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c
[  2%] Linking C executable msi2lmp
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/msi2lmp.dir/link.txt --verbose=1
/usr/bin/cc -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -rdynamic CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/CheckLists.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/GetParameters.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/InitializeItems.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/MakeLists.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadCarFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadFrcFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/ReadMdfFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/SearchAndFill.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/WriteDataFile.c.o CMakeFiles/msi2lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/tools/msi2lmp/src/msi2lmp.c.o  -o msi2lmp -lm 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp
[  2%] Built target msi2lmp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/atc.dir/DependInfo.cmake --color=
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp
[  2%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h: In constructor 'TreeNode::TreeNode(const int&, TreeNode*, TreeNode*, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h:36:6: warning: 'TreeNode::data' will be initialized after [-Wreorder]
BUILDSTDERR:   int data;
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.h:32:12: warning:   'TreeNode* TreeNode::left' [-Wreorder]
BUILDSTDERR:   TreeNode *left;
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp:22:1: warning:   when initialized here [-Wreorder]
BUILDSTDERR:  TreeNode::TreeNode (const int & item, TreeNode *lptr,TreeNode *rptr,
BUILDSTDERR:  ^
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp
Scanning dependencies of target atc
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  3%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp
[  3%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp
[  3%] Building CXX object CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp
[  3%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp
[  4%] Linking CXX static library libpoems.a
/usr/bin/cmake3 -P CMakeFiles/poems.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/poems.dir/link.txt --verbose=1
/usr/bin/ar qc libpoems.a  CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/body23joint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatmap.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/colmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/eulerparameters.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fastmatrixops.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/fixedpoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/freebodyjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/inertialframe.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/joint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat3x3.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat4x4.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mat6x6.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/matrixfun.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/mixedjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/norm.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onbody.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onfunctions.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/onsolver.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/particle.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemsobject.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/poemstreenode.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/point.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/prismaticjoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/revolutejoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rigidbody.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/rowmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/solver.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/sphericaljoint.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/system.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect3.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect4.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/vect6.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualcolmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/virtualrowmatrix.cpp.o CMakeFiles/poems.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems/workspace.cpp.o
/usr/bin/ranlib libpoems.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Built target poems
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/cslib.dir/DependInfo.cmake --color=
Scanning dependencies of target cslib
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp: In member function 'void CSLIB_NS::CSlib::onefield(int, int, int&, int&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp:649:26: warning: 'bigbytes' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    nbytes = (int) bigbytes;
BUILDSTDERR:                           ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp:20:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:73:13: warning: 'void CSLIB_NS::MPI_Bcast(void*, int, CSLIB_NS::MPI_Datatype, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Bcast(void *, int, MPI_Datatype, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp: In member function 'virtual void CSLIB_NS::MsgFile::recv(int&, int*&, int&, char*&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:125:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(lengths,sizeof(int),2,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:132:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(header,sizeof(int),nheader,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:135:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(buf,1,nbuf,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp: In member function 'void CSLIB_NS::MsgMPITwo::init(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp:60:39: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(port,MPI_MAX_PORT_NAME,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Building CXX object CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_NO -DZMQ_NO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_ZMQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp:18:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:43:13: warning: 'void CSLIB_NS::MPI_Init(int*, char***)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Init(int *, char ***) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:44:17: warning: 'CSLIB_NS::MPI_Comm CSLIB_NS::MPI_Comm_f2c(CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static MPI_Comm MPI_Comm_f2c(MPI_Comm world) {return world;}
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:45:13: warning: 'void CSLIB_NS::MPI_Comm_rank(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_rank(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:46:13: warning: 'void CSLIB_NS::MPI_Comm_size(CSLIB_NS::MPI_Comm, int*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_size(MPI_Comm, int *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:48:13: warning: 'void CSLIB_NS::MPI_Open_port(CSLIB_NS::MPI_Info, char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Open_port(MPI_Info, char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:49:13: warning: 'void CSLIB_NS::MPI_Close_port(const char*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Close_port(const char *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:50:13: warning: 'void CSLIB_NS::MPI_Comm_accept(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_accept(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:52:13: warning: 'void CSLIB_NS::MPI_Comm_connect(const char*, CSLIB_NS::MPI_Info, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_connect(const char *, MPI_Info, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:55:13: warning: 'void CSLIB_NS::MPI_Comm_split(CSLIB_NS::MPI_Comm, int, int, CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:56:13: warning: 'void CSLIB_NS::MPI_Comm_free(CSLIB_NS::MPI_Comm*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Comm_free(MPI_Comm *) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:58:13: warning: 'void CSLIB_NS::MPI_Send(const void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Send(const void *, int, MPI_Datatype, int, int, MPI_Comm) {}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:59:13: warning: 'void CSLIB_NS::MPI_Recv(void*, int, CSLIB_NS::MPI_Datatype, int, int, CSLIB_NS::MPI_Comm, CSLIB_NS::MPI_Status*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Recv(void *, int, MPI_Datatype, int, int, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:62:13: warning: 'void CSLIB_NS::MPI_Allreduce(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allreduce(const void *in, void *out, int, MPI_Datatype type, 
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:67:13: warning: 'void CSLIB_NS::MPI_Scan(const void*, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Op, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Scan(const void *in, void *out, int, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:74:13: warning: 'void CSLIB_NS::MPI_Allgather(const void*, int, CSLIB_NS::MPI_Datatype, void*, int, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgather(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:80:13: warning: 'void CSLIB_NS::MPI_Allgatherv(const void*, int, CSLIB_NS::MPI_Datatype, void*, const int*, const int*, CSLIB_NS::MPI_Datatype, CSLIB_NS::MPI_Comm)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Allgatherv(const void *in, int incount, MPI_Datatype intype,
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:91:13: warning: 'void CSLIB_NS::MPI_Abort(CSLIB_NS::MPI_Comm, int)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Abort(MPI_Comm, int) {exit(1);}
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/STUBS_MPI/mpi_dummy.h:92:13: warning: 'void CSLIB_NS::MPI_Finalize()' defined but not used [-Wunused-function]
BUILDSTDERR:  static void MPI_Finalize() {}
BUILDSTDERR:              ^
[  4%] Linking CXX static library libcsnompi.a
/usr/bin/cmake3 -P CMakeFiles/cslib.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/cslib.dir/link.txt --verbose=1
/usr/bin/ar qc libcsnompi.a  CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/cslib_wrap.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_file.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_one.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_mpi_two.cpp.o CMakeFiles/cslib.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src/msg_zmq.cpp.o
/usr/bin/ranlib libcsnompi.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Built target cslib
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/h5md.dir/DependInfo.cmake --color=
Scanning dependencies of target h5md
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Building C object CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o
/usr/bin/cc -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o   -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c
[  4%] Linking C static library libh5md.a
/usr/bin/cmake3 -P CMakeFiles/h5md.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1
/usr/bin/ar qc libh5md.a  CMakeFiles/h5md.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/src/ch5md.c.o
/usr/bin/ranlib libh5md.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Built target h5md
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
Scanning dependencies of target gitversion
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/cmake3 -DCMAKE_CURRENT_SOURCE_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles" -P /builddir/build/BUILD/lammps-stable_5Jun2019/cmake/Modules/generate_lmpgitversion.cmake
-- Generating lmpgitversion.h...
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Built target gitversion
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/gpu.dir/DependInfo.cmake --color=
[  4%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp
Scanning dependencies of target gpu
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In member function 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:182:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (_ef_atom)
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:196:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (_vf_atom)
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In member function 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:231:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (_ef_atom)
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:250:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (_vf_atom)
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp: In instantiation of 'double LAMMPS_AL::Answer<numtyp, acctyp>::energy_virial(double*, double**, double*, double&) [with numtyp = float; acctyp = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:313:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp:224:7: warning: unused variable 'ii' [-Wunused-variable]
BUILDSTDERR:    int ii, vstart=0, iend=_inum;
BUILDSTDERR:        ^
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  5%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp
[  5%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp
[  6%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp
[  6%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  6%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  7%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp
[  8%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  8%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp: In instantiation of 'void LAMMPS_AL::EAM<numtyp, acctyp>::loop(bool, bool) [with numtyp = float; acctyp = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:533:16:   required from here
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp:448:14: warning: variable 'vflag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int eflag, vflag;
BUILDSTDERR:               ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp
[  9%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[  9%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
Scanning dependencies of target ocl_get_devices
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 10%] Building CXX object CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DUCL_OPENCL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp:25:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'void Lepton::CompiledExpression::compileExpression(const Lepton::ExpressionTreeNode&, std::vector<std::pair<Lepton::ExpressionTreeNode, int> >&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:91:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < node.getChildren().size(); i++) {
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:113:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              for (int i = 1; i < args.size(); i++)
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp: In member function 'double Lepton::CompiledExpression::evaluate() const':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:170:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < variablesToCopy.size(); i++)
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:175:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int step = 0; step < operation.size(); step++) {
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp:180:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              for (int i = 0; i < args.size(); i++)
BUILDSTDERR:                                            ^
[ 10%] Linking CXX executable ocl_get_devices
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/ocl_get_devices.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -rdynamic CMakeFiles/ocl_get_devices.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ucl_get_devices.cpp.o  -o ocl_get_devices -lOpenCL 
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 10%] Built target ocl_get_devices
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 10%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp
[ 11%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 11%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const std::vector<Lepton::ExpressionTreeNode>&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:40:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&, const Lepton::ExpressionTreeNode&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:47:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*, const Lepton::ExpressionTreeNode&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:53:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp: In constructor 'Lepton::ExpressionTreeNode::ExpressionTreeNode(Lepton::Operation*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp:58:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (operation->getNumArguments() != children.size())
BUILDSTDERR:                                                        ^
[ 11%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp
[ 12%] Building CXX object CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/include -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -DLEPTON -o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ParsedExpression Lepton::Parser::parse(const string&, const std::map<std::basic_string<char>, Lepton::CustomFunction*>&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:181:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (pos != tokens.size())
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:190:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos != tokens.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp: In static member function 'static Lepton::ExpressionTreeNode Lepton::Parser::parsePrecedence(const std::vector<Lepton::ParseToken>&, int&, const std::map<std::basic_string<char>, Lepton::CustomFunction*>&, const std::map<std::basic_string<char>, Lepton::ExpressionTreeNode>&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:201:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (pos == tokens.size())
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:227:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen)
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp:241:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          if (pos == tokens.size() || tokens[pos].getType() != ParseToken::RightParen)
BUILDSTDERR:                                 ^
[ 12%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 12%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Linking CXX static library libcolvars.a
/usr/bin/cmake3 -P CMakeFiles/colvars.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/colvars.dir/link.txt --verbose=1
/usr/bin/ar qc libcolvars.a  CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvar.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvaratoms.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_abf.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_alb.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_histogram.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_meta.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarbias_restraint.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_angles.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_coordnums.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_distances.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_protein.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarcomp_rotations.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvardeps.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvargrid.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarmodule.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarparse.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarproxy.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarscript.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvartypes.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/colvarvalue.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/CompiledExpression.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionProgram.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Operation.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/ParsedExpression.cpp.o CMakeFiles/colvars.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars/lepton/src/Parser.cpp.o
/usr/bin/ranlib libcolvars.a
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 13%] Built target colvars
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp:18:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_kernel.h:27:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp:25:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 13%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.h:20,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 13%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp:27:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp
[ 14%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 14%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp:26:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.h:21,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp:22:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp:24:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/c++  -DFFT_FFTW -DGENERIC_OCL -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -DMPI_GERYON -DUCL_NO_EXIT -DUSE_OPENCL -D_SINGLE_DOUBLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/gpu -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_timer.h:28:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.h:19,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp:20:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h: In member function 'int ucl_opencl::UCL_Device::create_context()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/geryon/ocl_device.h:376:25: warning: variable 'props' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    cl_context_properties props[3];
BUILDSTDERR:                          ^
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp
[ 15%] Linking CXX static library libgpu.a
/usr/bin/cmake3 -P CMakeFiles/gpu.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/gpu.dir/link.txt --verbose=1
/usr/bin/ar qc libgpu.a  CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_answer.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_atom.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_atomic.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_charge.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dipole.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_dpd.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_ellipsoid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_base_three.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_beck_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_coul_wolf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_born_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_buck_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_charmm_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_colloid_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_debye_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_dsf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_cs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_device.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_lj_sf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dipole_long_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_dpd_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_alloy_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_eam_fs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gauss_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_gayberne_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj96_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_class2_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_debye_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_coul_msm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_cubic_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_dsf_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_coul_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_expand_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_gromacs_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_lj_sdk_long_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_mie_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_morse_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_neighbor_shared.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_pppm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_re_squared_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_soft_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_sw_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_table_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_mod_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_tersoff_zbl_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_ufm_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_vashishta_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_colloid_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_yukawa_ext.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl.cpp.o CMakeFiles/gpu.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/gpu/lal_zbl_ext.cpp.o
/usr/bin/ranlib libgpu.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 15%] Built target gpu
[ 15%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.h:9,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Array.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Array2D.h:9,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp
[ 16%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp:2:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp: In member function 'void ATC::OutputManager::read_restart_file(std::string, ATC::RESTART_LIST*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp:164:42: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&myVal,sizeof(double),1,fp);
BUILDSTDERR:                                           ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp
[ 17%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.h:8,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.h:5,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixDef.h:23:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.h:3,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/DenseVector.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Utility.h:303:22: warning: 'std::string ATC_Utility::to_cap(const string&)' defined but not used [-Wunused-function]
BUILDSTDERR:    static std::string to_cap(const std::string &s) {
BUILDSTDERR:                       ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.h:4,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp:1:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 18%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix.h:297:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MatrixLibrary.h:10,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TypeDefs.h:17,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.h:25,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantity.h:7,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.h:6,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.h:11,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp:2:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h: In member function 'void ATC_matrix::SparseMatrix<T>::compress() [with T = double]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SparseMatrix-inl.h:341:5: warning: 'next.ATC_matrix::TRI_COORD<double>::v' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      val[i] = next.v;
BUILDSTDERR:      ^
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp
[ 19%] Building CXX object CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp
[ 19%] Linking CXX static library libatc.a
/usr/bin/cmake3 -P CMakeFiles/atc.dir/cmake_clean_target.cmake
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/atc.dir/link.txt --verbose=1
/usr/bin/ar qc libatc.a  CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Coupling.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingEnergy.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMass.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_CouplingMomentumEnergy.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Method.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_Transfer.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferKernel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ATC_TransferPartitionOfUnity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomToMoleculeTransfer.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/AtomicRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/BodyForce.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CBLattice.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CauchyBorn.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/CbPotential.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ChargeRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ConcentrationRegulator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElasticTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronChargeDensity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronDragPower.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronFlux.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatCapacity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronHeatFlux.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ElectronPhononExchange.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelElectrostatic.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ExtrinsicModelTwoTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Element.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Engine.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Interpolate.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FE_Mesh.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldEulerIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FieldManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Function.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/FundamentalAtomicQuantity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/GhostManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ImplicitSolveOperator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/InterscaleOperators.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KD_Tree.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KernelFunction.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/KinetoThermostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Kinetostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LammpsInterface.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/LinearSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MPI_Wrappers.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Material.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Matrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MeshReader.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/MoleculeSet.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/NonLinearSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/OutputManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PaqAtcUtility.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParDiagonalMatrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ParSparseMatrix.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerAtomQuantityLibrary.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PerPairQuantity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PhysicsModel.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PoissonSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PolynomialSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/PrescribedDataManager.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Quadrature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SchrodingerSolver.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/SpeciesTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Stress.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ThermalTimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Thermostat.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeFilter.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TimeIntegrator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferLibrary.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/TransferOperator.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/Vector.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/ViscousStress.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationChargeDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronContinuity.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationElectronTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMassDiffusion.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationMomentum.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPhononTemperature.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationPoisson.cpp.o CMakeFiles/atc.dir/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc/WeakEquationSchrodinger.cpp.o
/usr/bin/ranlib libatc.a
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 19%] Built target atc
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/lammps.dir/DependInfo.cmake --color=
Scanning dependencies of target lammps
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp.o
[ 19%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp.o
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_deprecated.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp: In member function 'virtual void LAMMPS_NS::AngleZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_zero.cpp:132:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp: In member function 'virtual void LAMMPS_NS::AngleHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:337:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:346:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/angle_hybrid.cpp:349:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_map.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_atomic.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_body.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_charge.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp: In member function 'void LAMMPS_NS::Atom::data_atoms(int, char*, LAMMPS_NS::tagint, LAMMPS_NS::tagint, int, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.cpp:979:48: warning: 'iptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        imagedata = ((imageint) (atoi(values[iptr]) + IMGMAX) & IMGMASK) |
BUILDSTDERR:                                                 ^
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_ellipsoid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_hybrid.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_line.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_sphere.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom_vec_tri.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/balance.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/body.cpp
[ 20%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_deprecated.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/change_box.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp: In member function 'virtual void LAMMPS_NS::BondHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:338:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:347:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_hybrid.cpp:350:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp: In member function 'virtual void LAMMPS_NS::BondZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/bond_zero.cpp:130:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/citeme.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp: In member function 'virtual void LAMMPS_NS::CommBrick::borders()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_brick.cpp:714:28: warning: 'nfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nsend,nrecv,sendflag,nfirst,nlast,ngroup;
BUILDSTDERR:                             ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_aggregate_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp: In member function 'virtual void LAMMPS_NS::ComputeADF::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_adf.cpp:312:7: warning: 'x0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int x0;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp: In member function 'void LAMMPS_NS::CommTiled::box_drop_brick(int, double*, double*, int&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp:1500:17: warning: 'dir' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += dir;
BUILDSTDERR:                  ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp: In member function 'virtual void LAMMPS_NS::CommTiled::borders()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/comm_tiled.cpp:818:9: warning: 'nlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          for (i = atom->nlocal; i < nlast; i++) {
BUILDSTDERR:          ^
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp.o
[ 21%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angmom_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp: In member function 'int LAMMPS_NS::ComputeAngleLocal::compute_angles(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:301:25: warning: 'theta' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ptr[n] = 180.0*theta/MY_PI;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:309:17: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ivar++;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:247:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_angle_local.cpp:245:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->angle_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_centro_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_spread_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp: In member function 'int LAMMPS_NS::ComputeBondLocal::compute_bonds(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:400:28: warning: 'engrot' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engrot;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:397:28: warning: 'engvib' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engvib;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:403:30: warning: 'engtrans' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engtrans;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:391:28: warning: 'engpot' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = engpot;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:406:34: warning: 'omegasq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = sqrt(omegasq);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:409:26: warning: 'vvib' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ptr[n] = vvib;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:413:19: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ivar++;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:281:47: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          btype = onemols[imol]->bond_type[iatom][i];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_bond_local.cpp:281:29: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          btype = onemols[imol]->bond_type[iatom][i];
BUILDSTDERR:                              ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cluster_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_cna_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin1d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1512:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap < boxlo[idim]) xremap += prd[idim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1513:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap >= boxhi[idim]) xremap -= prd[idim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1512:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (xremap < boxlo[idim]) xremap += prd[idim];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin2d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1614:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap < boxlo[jdim]) yremap += prd[jdim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1615:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap >= boxhi[jdim]) yremap -= prd[jdim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1614:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (yremap < boxlo[jdim]) yremap += prd[jdim];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In member function 'void LAMMPS_NS::ComputeChunkAtom::atom2bin3d()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1747:51: warning: 'prd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap < boxlo[kdim]) zremap += prd[kdim];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1748:31: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap >= boxhi[kdim]) zremap -= prd[kdim];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:1747:30: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (zremap < boxlo[kdim]) zremap += prd[kdim];
BUILDSTDERR:                               ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_com_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_contact_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp: In constructor 'LAMMPS_NS::ComputeChunkAtom::ComputeChunkAtom(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_chunk_atom.cpp:413:29: warning: 'scale' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          delta[idim] *= scale;
BUILDSTDERR:                              ^
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_coord_atom.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_deprecated.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dipole_chunk.cpp
[ 22%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_displace_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp: In member function 'int LAMMPS_NS::ComputeDihedralLocal::compute_dihedrals(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:321:17: warning: 'ivar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ivar++;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:245:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_dihedral_local.cpp:244:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->dihedral_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_erotate_sphere_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_fragment_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_group_group.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_gyration_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp: In member function 'virtual void LAMMPS_NS::ComputeGlobalAtom::compute_peratom()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp:521:29: warning: 'vmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j >= 0 && j < vmax) array_atom[i][m] = source[j];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_global_atom.cpp:452:29: warning: 'vmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j >= 0 && j < vmax) array_atom[i][m] = source[j];
BUILDSTDERR:                              ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_heat_flux.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_hexorder_atom.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_inertia_chunk.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke.cpp
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_ke_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp: In member function 'int LAMMPS_NS::ComputeImproperLocal::compute_impropers(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:163:30: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tagprev = tag[atom2] - iatom - 1;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:162:39: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (tag[atom2] != onemols[imol]->improper_atom2[atom2][i]) continue;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_improper_local.cpp:218:17: warning: 'cbuf' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            cbuf[n] = 180.0*acos(c)/MY_PI;
BUILDSTDERR:                  ^
[ 23%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_msd_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_omega_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_orientorder_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pair_local.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pe_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_atom.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_property_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp: In member function 'virtual double LAMMPS_NS::ComputePressure::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp:205:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp: In member function 'virtual void LAMMPS_NS::ComputePressure::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_pressure.cpp:243:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_rdf.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_chunk.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_reduce_region.cpp
[ 24%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_slice.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_stress_atom.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_com.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_deform.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_partial.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_profile.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_ramp.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_region.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_temp_sphere.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_torque_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vacf.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/compute_vcm_chunk.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp
[ 25%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_box.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp: In member function 'void LAMMPS_NS::CreateAtoms::add_random()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:668:55: warning: 'boxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              coord[1] < boxlo[1] || coord[1] >= boxhi[1] ||
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:668:31: warning: 'boxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              coord[1] < boxlo[1] || coord[1] >= boxhi[1] ||
BUILDSTDERR:                                ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/delete_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp: In member function 'void LAMMPS_NS::CreateAtoms::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:229:46: warning: 'molseed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ranmol = new RanMars(lmp,molseed+comm->me);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_atoms.cpp:119:24: warning: 'iarg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (strcmp(arg[iarg],"basis") == 0) {
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp: In member function 'void LAMMPS_NS::CreateBonds::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/create_bonds.cpp:129:10: warning: 'style' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    } else if (style == SANGLE) {
BUILDSTDERR:           ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/deprecated.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_deprecated.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_zero.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/displace_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp: In member function 'virtual void LAMMPS_NS::DihedralHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:322:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:331:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dihedral_hybrid.cpp:334:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_atom.cpp
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_cfg.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp: In member function 'void LAMMPS_NS::Domain::box_too_small_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:855:43: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:855:25: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                          ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp: In member function 'virtual void LAMMPS_NS::Dump::write()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:516:20: warning: 'vhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->v = vhold;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:515:20: warning: 'xhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->x = xhold;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump.cpp:517:28: warning: 'imagehold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      atom->image = imagehold;
BUILDSTDERR:                             ^
[ 26%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_dcd.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_deprecated.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp: In member function 'void LAMMPS_NS::Domain::image_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:756:43: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/domain.cpp:756:25: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (onemols[imol]->bond_type[iatom][j] < 0) continue;
BUILDSTDERR:                          ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_local.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_movie.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_xyz.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp: In member function 'void LAMMPS_NS::DumpImage::create_image()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1033:66: warning: 'color2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              image->draw_cylinder(xmid,x[atom2],color2,diameter,3);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1027:66: warning: 'color1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              image->draw_cylinder(x[atom1],xmid,color1,diameter,3);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:968:59: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            btype = atom->map(onemols[imol]->bond_type[iatom][m]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:968:41: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            btype = atom->map(onemols[imol]->bond_type[iatom][m]);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:831:55: warning: 'color' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        image->draw_cylinder(pt1,pt2,color,ldiamvalue,3);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_image.cpp:1036:72: warning: 'diameter' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          } else image->draw_cylinder(x[atom1],x[atom2],color,diameter,3);
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp: In member function 'virtual int LAMMPS_NS::DumpCustom::count()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:1032:30: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  (*ptr != 0.0 && value != 0.0))
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:529:13: warning: 'values' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      double *values;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/dump_custom.cpp:528:18: warning: 'ptrhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      double *ptr,*ptrhold;
BUILDSTDERR:                   ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/error.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_adapt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp: In member function 'void LAMMPS_NS::Finish::end(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp:777:33: warning: 'nneighfull' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      tmp = MAX(nneigh,nneighfull);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/finish.cpp:777:33: warning: 'nneigh' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_addforce.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_atom.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelate::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp:537:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp: In member function 'virtual void LAMMPS_NS::FixAveChunk::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_chunk.cpp:1057:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp: In member function 'virtual void LAMMPS_NS::FixAveHisto::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo.cpp:854:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_correlate.cpp:482:34: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      values[lastindex][i] = scalar;
BUILDSTDERR:                                   ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp: In member function 'virtual void LAMMPS_NS::FixAveHistoWeight::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_histo_weight.cpp:499:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 27%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:700:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_vector(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:911:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_aveforce.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_box_relax.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'int LAMMPS_NS::FixAveTime::column_length(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:971:9: warning: 'lengthone' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (lengthone != nrows)
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In member function 'void LAMMPS_NS::FixAveTime::invoke_scalar(LAMMPS_NS::bigint)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:629:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else vector[i] += scalar;
BUILDSTDERR:                              ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_controller.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp: In member function 'void LAMMPS_NS::FixBalance::rebalance()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_balance.cpp:299:67: warning: 'sendproc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (lbstyle == BISECTION) irregular->migrate_atoms(0,1,sendproc);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp: In constructor 'LAMMPS_NS::FixAveTime::FixAveTime(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_ave_time.cpp:411:9: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (value == -1)
BUILDSTDERR:          ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deprecated.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_drag.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_dt_reset.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_enforce2d.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_external.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp: In constructor 'LAMMPS_NS::FixDeform::FixDeform(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_deform.cpp:184:18: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          set[index].style = VARIABLE;
BUILDSTDERR:                   ^
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_gravity.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_group.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_halt.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_heat.cpp
[ 28%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_indent.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_langevin.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_lineforce.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_minimize.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_momentum.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_neigh_history.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp: In member function 'virtual void LAMMPS_NS::FixMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:847:61: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:817:61: warning: 'dy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_move.cpp:787:61: warning: 'dx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx;
BUILDSTDERR:                                                              ^
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nh_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nph_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_npt_sphere.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_limit.cpp
[ 29%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_noforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nve_sphere.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sllod.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_nvt_sphere.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_planeforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_press_berendsen.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_print.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_property_atom.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_read_restart.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_respa.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp: In member function 'virtual void LAMMPS_NS::FixRecenter::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp:182:41: warning: 'bboxhi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ztarget = bboxlo[2] + zcom*(bboxhi[2] - bboxlo[2]);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_recenter.cpp:182:53: warning: 'bboxlo' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      ztarget = bboxlo[2] + zcom*(bboxhi[2] - bboxlo[2]);
BUILDSTDERR:                                                      ^
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_setforce.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring.cpp
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_chunk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp: In member function 'void LAMMPS_NS::FixRestrain::restrain_dihedral(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_restrain.cpp:566:33: warning: 'ddf1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    df1 = df1*cos_target[m] - ddf1*sin_target[m];
BUILDSTDERR:                                  ^
[ 30%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_rg.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_spring_self.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_force.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_store_state.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_berendsen.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csld.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_csvr.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_temp_rescale.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_viscous.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp: In constructor 'LAMMPS_NS::FixVector::FixVector(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_vector.cpp:149:26: warning: 'finalvalue' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      extarray = finalvalue;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp: In member function 'void LAMMPS_NS::FixTMD::readfile(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_tmd.cpp:457:7: warning: 'imageflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (imageflag)
BUILDSTDERR:        ^
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_harmonic.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj1043.cpp
[ 31%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj126.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_lj93.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp: In constructor 'LAMMPS_NS::FixWall::FixWall(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall.cpp:77:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_region.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/force.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp: In constructor 'LAMMPS_NS::FixWallReflect::FixWallReflect(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix_wall_reflect.cpp:68:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/hashlittle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp: In member function 'void LAMMPS_NS::Group::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:739:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&ngroup,sizeof(int),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:751:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/group.cpp:755:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(names[i],sizeof(char),n,fp);
BUILDSTDERR:                                                      ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_group.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_neigh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp: In member function 'void LAMMPS_NS::Image::draw_cube(double*, double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/image.cpp:516:31: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            tdir[2] = camDir[2] * t;
BUILDSTDERR:                                ^
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_store.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_time.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/imbalance_var.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper.cpp
[ 32%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_deprecated.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_zero.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/info.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp: In member function 'virtual void LAMMPS_NS::ImproperHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:319:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:328:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/improper_hybrid.cpp:331:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/input.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/integrate.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/irregular.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/kspace_deprecated.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lattice.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/library.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/lmppython.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_special.cpp
[ 33%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp: In function 'void MathExtra::no_squish_rotate(int, double*, double*, double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:52: warning: 'kq[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:39: warning: 'kq[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:26: warning: 'kq[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:260:13: warning: 'kq[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    phi = p[0]*kq[0] + p[1]*kq[1] + p[2]*kq[2] + p[3]*kq[3];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:271:28: warning: 'kp[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[3] = c_phi*p[3] + s_phi*kp[3];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:270:28: warning: 'kp[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[2] = c_phi*p[2] + s_phi*kp[2];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:269:28: warning: 'kp[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[1] = c_phi*p[1] + s_phi*kp[1];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/math_extra.cpp:268:28: warning: 'kp[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    p[0] = c_phi*p[0] + s_phi*kp[0];
BUILDSTDERR:                             ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_cg.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_fire.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_hftn.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_linesearch.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_quickmin.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/min_sd.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/minimize.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/molecule.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp: In member function 'int LAMMPS_NS::Modify::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1363:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nfix_restart_global,sizeof(int),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1380:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1383:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(id_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1386:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1389:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(style_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1392:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1395:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(state_restart_global[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1405:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nfix_restart_peratom,sizeof(int),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1422:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1425:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(id_restart_peratom[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1428:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1431:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(style_restart_peratom[i],sizeof(char),n,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/modify.cpp:1434:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nbin_standard.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_request.cpp
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp: In member function 'int LAMMPS_NS::Neighbor::choose_stencil(LAMMPS_NS::NeighRequest*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp:1675:5: warning: 'newtflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (newtflag) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp: In member function 'int LAMMPS_NS::Neighbor::choose_pair(LAMMPS_NS::NeighRequest*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/neighbor.cpp:1783:5: warning: 'newtflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (newtflag) {
BUILDSTDERR:      ^
[ 34%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_copy.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp: In member function 'virtual void LAMMPS_NS::NPairFullBin::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:104:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:102:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin.cpp:102:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_atomonly.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairFullBinGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:110:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:108:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_bin_ghost.cpp:108:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp: In member function 'virtual void LAMMPS_NS::NPairFullMulti::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:111:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:109:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_multi.cpp:109:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp: In member function 'virtual void LAMMPS_NS::NPairFullNsq::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:105:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:103:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:103:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq.cpp:89:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairFullNsqGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:104:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:102:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_full_nsq_ghost.cpp:102:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_atomonly_newton.cpp
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:108:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:106:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff.cpp:106:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtoffGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:116:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:114:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newtoff_ghost.cpp:114:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:140:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:138:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton.cpp:138:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_bin_newton_tri.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:115:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:113:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newtoff.cpp:113:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:148:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:146:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton.cpp:146:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 35%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfMultiNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:123:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:121:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_multi_newton_tri.cpp:121:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:106:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:104:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:104:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff.cpp:90:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewtoffGhost::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:115:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:113:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:113:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newtoff_ghost.cpp:127:39: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                        ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:123:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:121:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:121:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_nsq_newton.cpp:91:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:174:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:132:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:130:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:130:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:152:41: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newtoff.cpp:72:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:220:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:178:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:176:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:176:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:153:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:71:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:220:45: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:221:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton.cpp:219:29: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[inum] = i;
BUILDSTDERR:                              ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaBinNewtonTri::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:182:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:140:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:138:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:138:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:160:41: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                          ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_bin_newton_tri.cpp:72:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:169:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:130:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:128:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:128:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:148:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:76:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newtoff.cpp:114:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfRespaNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:189:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:149:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:147:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:147:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:168:39: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              neighptr_middle[n_middle++] = j ^ (which << SBBITS);
BUILDSTDERR:                                        ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:78:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_respa_nsq_newton.cpp:117:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_bin_newton_tri.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfSizeNsqNewtoff::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newtoff.cpp:79:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newtoff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfSizeNsqNewton::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_half_size_nsq_newton.cpp:82:37: warning: 'bitmask' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (includegroup && !(mask[j] & bitmask)) continue;
BUILDSTDERR:                                      ^
[ 36%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_halffull_newton.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp: In member function 'virtual void LAMMPS_NS::NPairSkipRespa::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:152:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:153:36: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:16:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:223:67: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (posix_memalign(&ptr, LAMMPS_MEMALIGN, pagesize*sizeof(T)))
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_respa.cpp:64:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/npair_skip_size_off2on_oneside.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_bin_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_ghost_bin_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_2d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_full_multi_3d.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newtoff.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_2d_newton_tri.cpp
[ 37%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_bin_3d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_2d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_ghost_bin_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_2d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newtoff.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/nstencil_half_multi_3d_newton_tri.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_all.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_partial.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_angle_template.cpp
[ 38%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_bond_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_dihedral_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_all.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_partial.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ntopo_improper_template.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/output.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp: In member function 'void LAMMPS_NS::Pair::write_file(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:1677:5: warning: 'rsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (rsq < cutsq[itype][jtype]) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:1688:32: warning: 'q_hold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (atom->q) atom->q = q_hold;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp: In member function 'virtual void LAMMPS_NS::Pair::init_tables(double, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:414:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (msmflag) ftable[i] = qqrd2e/r * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:401:30: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          etable[i] = qqrd2e/r * egamma;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:405:30: warning: 'derfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          etable[i] = qqrd2e/r * derfc;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:415:61: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            else ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair.cpp:415:56: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            else ftable[i] = qqrd2e/r * (derfc + MY_ISPI4*grij*expm2);
BUILDSTDERR:                                                         ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:281:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:285:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&AA[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:286:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&BB[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:287:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&aa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:288:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:289:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&beta[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:290:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp: In member function 'virtual void LAMMPS_NS::PairBeck::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:320:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_beck.cpp:321:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:333:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:337:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:338:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:339:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:340:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:341:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:342:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp: In member function 'virtual void LAMMPS_NS::PairBorn::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:373:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:374:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:375:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born.cpp:376:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:365:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:369:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:370:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:371:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:372:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:373:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:374:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:406:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:407:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:409:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:410:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:167:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:163:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:164:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:168:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:163:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:488:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:489:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        + d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:483:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:484:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_dsf.cpp:483:37: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:364:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:368:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:369:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:370:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:371:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:372:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:373:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:405:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:406:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:407:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:409:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulWolf::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:486:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:487:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        + d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:481:33: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:482:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:481:41: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolf::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:170:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:167:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_born_coul_wolf.cpp:171:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 39%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:311:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:315:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:316:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:317:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:318:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp: In member function 'virtual void LAMMPS_NS::PairBuck::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:347:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:348:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:349:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck.cpp:350:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:367:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:371:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:372:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:373:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:374:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:375:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:406:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:407:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:408:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:409:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:410:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:468:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:468:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:147:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_buck_coul_cut.cpp:147:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:248:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:251:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:275:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:276:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_cut.cpp:277:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDebye::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:152:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:153:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:154:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_debye.cpp:155:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_streitz.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:256:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:281:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:282:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_dsf.cpp:283:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:253:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:277:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:278:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:279:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp: In member function 'virtual double LAMMPS_NS::PairCoulWolf::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:317:33: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:318:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_coul_wolf.cpp:317:41: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc-e_shift*r);
BUILDSTDERR:                                          ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp.o
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_deprecated.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:318:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:322:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:323:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:324:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp: In member function 'virtual void LAMMPS_NS::PairDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:352:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:353:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:354:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd.cpp:355:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:233:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:237:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:238:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp: In member function 'virtual void LAMMPS_NS::PairDPDTstat::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:266:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_start,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:267:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_stop,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:268:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:269:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_dpd_tstat.cpp:270:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:284:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:288:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:289:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:290:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp: In member function 'virtual void LAMMPS_NS::PairGauss::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:317:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:318:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_gauss.cpp:319:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:674:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(&nstyles,sizeof(int),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:697:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:700:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(keywords[m],sizeof(char),n,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:706:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:710:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(special_lj[m],sizeof(double),4,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:713:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:717:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(special_coul[m],sizeof(double),4,fp);
BUILDSTDERR:                                                               ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp: In member function 'virtual void LAMMPS_NS::PairHybridOverlay::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid_overlay.cpp:47:7: warning: 'multflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int multflag;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp: In member function 'virtual void LAMMPS_NS::PairHybrid::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_hybrid.cpp:399:7: warning: 'multflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int multflag;
BUILDSTDERR:        ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:610:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:614:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:615:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:616:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:645:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:646:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:647:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:648:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJ96Cut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:392:44: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_lj*forcelj*r2inv;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj96_cut.cpp:396:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:282:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:286:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:287:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:288:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:289:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:316:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual double LAMMPS_NS::PairLJCubic::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:348:32: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:345:66: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp: In member function 'virtual void LAMMPS_NS::PairLJCubic::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:133:40: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cubic.cpp:130:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp
[ 40%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:604:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:608:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:609:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:610:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:639:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:640:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:641:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:642:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:356:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:360:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:361:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:362:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:363:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:393:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:394:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:395:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:396:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:397:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:452:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_cut.cpp:139:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:386:44: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_lj*forcelj*r2inv;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut.cpp:390:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:173:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:174:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:175:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:176:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:177:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulDebye::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:215:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:211:71: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:211:53: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * atom->q[i]*atom->q[j] * rinv * screening;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDebye::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:109:72: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:109:54: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_debye.cpp:112:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:379:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:383:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:384:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:385:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:415:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:416:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:417:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:418:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:419:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:420:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:167:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:168:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:161:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:167:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:464:37: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_dsf.cpp:458:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:375:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:379:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:380:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:381:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:412:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alf,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:413:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:414:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:415:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:416:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:417:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulWolf::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:171:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_cut_coul_wolf.cpp:164:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:327:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:331:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:332:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:333:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:334:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpand::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:363:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:364:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:365:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_expand.cpp:366:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:344:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:348:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:349:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:350:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:351:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:381:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:382:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:383:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:384:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual double LAMMPS_NS::PairLJGromacs::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:438:65: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacs::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs.cpp:140:71: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:382:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:386:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:387:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:416:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:417:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:418:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_inner,sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:419:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:420:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:421:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual double LAMMPS_NS::PairLJGromacsCoulGromacs::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:503:51: warning: 'tlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:499:66: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:492:38: warning: 'tc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tc*tc*tc * (coulsw3 + coulsw4*tc);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp: In member function 'virtual void LAMMPS_NS::PairLJGromacsCoulGromacs::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:159:58: warning: 'tc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoulswitch = tc*tc*tc * (coulsw3 + coulsw4*tc);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:169:59: warning: 'tlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  (ljsw3[itype][jtype] + ljsw4[itype][jtype]*tlj);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:165:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_gromacs_coul_gromacs.cpp:165:46: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                               ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:355:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:359:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:360:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:361:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:362:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:392:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:393:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:394:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:395:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual double LAMMPS_NS::PairLJSmooth::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:453:30: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:452:60: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:448:19: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]) -
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmooth::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:143:38: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:142:68: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth.cpp:138:27: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:286:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:290:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:291:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:292:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairLJSmoothLinear::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:319:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_lj_smooth_linear.cpp:320:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:631:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:635:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:636:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:637:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamR[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:638:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamA[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:639:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:670:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:671:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:672:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:673:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:268:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:272:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:273:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:274:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:275:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp: In member function 'virtual void LAMMPS_NS::PairMorse::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:303:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:304:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_morse.cpp:305:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp: In member function 'virtual void LAMMPS_NS::PairMIECut::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:394:46: warning: 'r2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              fpair = factor_mie*forcemie*r2inv;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_mie_cut.cpp:398:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:249:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:253:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&prefactor[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:254:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp: In member function 'virtual void LAMMPS_NS::PairSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:279:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_soft.cpp:280:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:978:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:979:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:980:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewaldflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:981:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&pppmflag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:982:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&msmflag,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:983:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dispersionflag,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:984:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tip4pflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual double LAMMPS_NS::PairTable::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1043:41: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1043:14: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) * tb->deltasq6;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:1040:35: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phi = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp: In member function 'virtual void LAMMPS_NS::PairTable::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:177:49: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:177:22: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_table.cpp:174:45: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                              ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:289:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:293:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:294:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:295:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp: In member function 'virtual void LAMMPS_NS::PairUFM::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:323:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:324:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_ufm.cpp:325:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp
[ 41%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:255:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:259:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:260:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp: In member function 'virtual void LAMMPS_NS::PairYukawa::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:287:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kappa,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:288:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:289:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_yukawa.cpp:290:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp: In member function 'virtual void LAMMPS_NS::PairZBL::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp:141:53: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                                      ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp: In member function 'virtual double LAMMPS_NS::PairZBL::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zbl.cpp:289:45: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                              ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:175:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:179:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp: In member function 'virtual void LAMMPS_NS::PairZero::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:204:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pair_zero.cpp:205:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&coeffflag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/random_mars.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp: In member function 'void LAMMPS_NS::ProcMap::output(char*, int*, int***)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:687:16: warning: 'kme' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[5] = kme + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:686:16: warning: 'jme' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[4] = jme + 1;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:685:16: warning: 'ime' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    vec[3] = ime + 1;
BUILDSTDERR:                 ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/random_park.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp: In member function 'int LAMMPS_NS::ProcMap::best_factors(int, int**, int*, int, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/procmap.cpp:881:10: warning: 'index' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return index;
BUILDSTDERR:           ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp: In member function 'void LAMMPS_NS::RCB::compute(int, int, double**, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:559:73: warning: 'procpartner2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world);
BUILDSTDERR:                                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:487:29: warning: 'valuehalf_select' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else lo[dim] = valuehalf;
BUILDSTDERR:                              ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_data.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp: In member function 'void LAMMPS_NS::RCB::compute_old(int, int, double**, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/rcb.cpp:1051:73: warning: 'procpartner2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (readnumber == 2) MPI_Send(NULL,0,MPI_INT,procpartner2,0,world);
BUILDSTDERR:                                                                          ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp: In member function 'LAMMPS_NS::bigint LAMMPS_NS::ReadDump::seek(LAMMPS_NS::bigint, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:289:10: warning: 'ntimestep' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bigint ntimestep;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp: In member function 'LAMMPS_NS::bigint LAMMPS_NS::ReadDump::next(LAMMPS_NS::bigint, LAMMPS_NS::bigint, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:429:5: warning: 'eofflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (eofflag) ntimestep = -1;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_dump.cpp:384:10: warning: 'ntimestep' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bigint ntimestep;
BUILDSTDERR:           ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:307:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:311:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&procsperfile,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:314:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:318:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:324:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(buf,sizeof(double),n,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:384:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:387:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(&procsperfile,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:396:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:400:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(&n,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:406:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fread(buf,sizeof(double),n,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::file_layout()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1106:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(all_written_send_sizes,sizeof(int),nprocs_file,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'char* LAMMPS_NS::ReadRestart::read_string()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1288:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(value,sizeof(char),n,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_int_vec(int, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1300:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(vec,sizeof(int),n,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp: In member function 'void LAMMPS_NS::ReadRestart::read_double_vec(int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/read_restart.cpp:1311:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (me == 0) fread(vec,sizeof(double),n,fp);
BUILDSTDERR:                                               ^
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_native.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reader_xyz.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp: In member function 'int LAMMPS_NS::Region::surface(double, double, double, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:191:34: warning: 'xorig[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].delz = xorig[2] - zs;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:190:34: warning: 'xorig[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].dely = xorig[1] - ys;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region.cpp:189:34: warning: 'xorig[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        contact[i].delx = xorig[0] - xs;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp: In member function 'virtual int LAMMPS_NS::RegBlock::surface_exterior(double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'zp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    add_contact(0,x,xp,yp,zp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'yp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_block.cpp:335:28: warning: 'xp' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cone.cpp
[ 42%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp: In member function 'virtual int LAMMPS_NS::RegCylinder::surface_exterior(double*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'zp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      add_contact(0,x,xp,yp,zp);
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'yp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_cylinder.cpp:717:30: warning: 'xp' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_deprecated.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_intersect.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_plane.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_prism.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_sphere.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/region_union.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/replicate.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/rerun.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/reset_ids.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/respa.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp: In member function 'void LAMMPS_NS::Run::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp:173:41: warning: 'stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (stopflag) update->endstep = stop;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/run.cpp:171:45: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (startflag) update->beginstep = start;
BUILDSTDERR:                                              ^
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/special.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp: In member function 'void LAMMPS_NS::Set::setrandom(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/set.cpp:1152:24: warning: 'quat' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            quat[1] = 0.0;
BUILDSTDERR:                         ^
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/thermo.cpp
[ 43%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/timer.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp: In member function 'void LAMMPS_NS::Universe::reorder(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/universe.cpp:149:38: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    MPI_Comm_split(uorig,0,key,&uworld);
BUILDSTDERR:                                       ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/update.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/utils.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::next(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:684:33: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(fp,"%d",&nextindex);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp: In member function 'void LAMMPS_NS::Velocity::set(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:548:63: warning: 'zvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(zvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:543:63: warning: 'yvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(yvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:538:63: warning: 'xvar' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        else input->variable->compute_atom(xvar,igroup,NULL,3,0);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:461:17: warning: 'vz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vz *= zscale;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:457:17: warning: 'vy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vy *= yscale;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:453:17: warning: 'vx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      vx *= xscale;
BUILDSTDERR:                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:34:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.h: In member function 'void LAMMPS_NS::Velocity::create(double, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/memory.h:172:5: warning: 'vhold' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sfree(array[0]);
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/velocity.cpp:169:12: note: 'vhold' was declared here
BUILDSTDERR:    double **vhold;
BUILDSTDERR:             ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/verlet.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::group_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3933:39: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    } else argstack[nargstack++] = value;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'double LAMMPS_NS::Variable::evaluate_boolean(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4703:7: warning: 'op' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int op,opprevious,flag1,flag2;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_coeff.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::special_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4007:20: warning: 'nstride' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      int index,nvec,nstride;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:4150:7: warning: 'nvec' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        for (int i = 0; i < nvec; i++) {
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_data.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_dump.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'double LAMMPS_NS::Variable::evaluate(char*, LAMMPS_NS::Variable::Tree**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:1185:7: warning: 'op' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int op,opprevious;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/write_restart.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp: In member function 'void LAMMPS_NS::LAMMPS::init_pkg_lists()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:899:6: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without
BUILDSTDERR:  void LAMMPS::init_pkg_lists()
BUILDSTDERR:       ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'void LAMMPS_NS::Variable::compute_atom(int, int, double*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:1007:53: warning: 'vstore' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (mask[i] & groupbit) result[m] = vstore[i];
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp: In member function 'int LAMMPS_NS::Variable::math_function(char*, char*, LAMMPS_NS::Variable::Tree**, LAMMPS_NS::Variable::Tree**, int&, double*, int&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3685:37: warning: 'value2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        double value = value1 + value2*(1.0-cos(omega*delta*update->dt));
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/variable.cpp:3382:42: warning: 'value1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        argstack[nargstack++] = sqrt(value1);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp: In member function 'virtual double LAMMPS_NS::ComputeERotateAsphere::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:139:35: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertia[0] = tbonus[tri[i]].inertia[0];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:130:32: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          length = lbonus[line[i]].length;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_erotate_asphere.cpp:109:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/compute_temp_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nh_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp: In constructor 'LAMMPS_NS::LAMMPS::LAMMPS(int, char**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:163:14: warning: 'wlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int wfirst,wlast;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/lammps.cpp:163:7: warning: 'wfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int wfirst,wlast;
BUILDSTDERR:        ^
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nph_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_npt_asphere.cpp
[ 44%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_line.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_tri.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nvt_asphere.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp: In member function 'virtual void LAMMPS_NS::FixNVEAsphereNoforce::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/fix_nve_asphere_noforce.cpp:94:33: warning: 'bonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = bonus[ellipsoid[i]].shape;
BUILDSTDERR:                                  ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:466:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:469:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:473:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:477:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:478:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:479:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:511:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamma,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:512:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&upsilon,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:513:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:514:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:515:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:516:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:444:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      if (me == 0) fread(&setwell[i],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:447:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&well[i][0],sizeof(double),3,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:451:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:455:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:456:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:457:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:485:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:486:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp: In member function 'virtual void LAMMPS_NS::PairLineLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_line_lj.cpp:307:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp: In member function 'virtual void LAMMPS_NS::PairTriLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_tri_lj.cpp:381:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_nparticle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'double LAMMPS_NS::PairGayBerne::gayberne_analytic(int, int, double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double (*)[3], double*, double, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:36: warning: 'deta2[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:36: warning: 'deta2[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:36: warning: 'deta2[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:21: warning: 'dchi2[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:21: warning: 'dchi2[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:21: warning: 'dchi2[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:729:51: warning: '*((void*)& dUr2 +16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[2] = (temp1*dchi2[2]+temp2*deta2[2]+temp3*dUr2[2]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:728:51: warning: '*((void*)& dUr2 +8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[1] = (temp1*dchi2[1]+temp2*deta2[1]+temp3*dUr2[1]) * -1.0;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:727:51: warning: 'dUr2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rtor[0] = (temp1*dchi2[0]+temp2*deta2[0]+temp3*dUr2[0]) * -1.0;
BUILDSTDERR:                                                    ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polygon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp: In member function 'virtual void LAMMPS_NS::PairGayBerne::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_gayberne.cpp:219:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_body_local.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp: In member function 'virtual void LAMMPS_NS::PairRESquared::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE/pair_resquared.cpp:194:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/compute_temp_body.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::BodyRoundedPolyhedron::data_body(int, int, int, int*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/body_rounded_polyhedron.cpp:213:7: warning: 'nedges' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nedges,nentries;
BUILDSTDERR:        ^
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nh_body.cpp
[ 45%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nph_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_npt_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nve_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_nvt_body.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolygon::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:245:11: warning: variable 'interact' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        int interact, num_contacts, done;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:14: warning: variable 'rsqinv' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:33: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:39: warning: variable 'eradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:45: warning: variable 'rradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:109:51: warning: variable 'rradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rsq,rsqinv,r,radi,radj,eradi,eradj,rradi,rradj,k_nij,k_naij;
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'void LAMMPS_NS::PairBodyRoundedPolygon::sphere_against_sphere(int, int, double, double, double, double, double, double, double**, double**, double**, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:602:10: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double eradi,eradj,rradi,rradj;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:602:16: warning: variable 'eradj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double eradi,eradj,rradi,rradj;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:604:32: warning: variable 'fn' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rij,rsqinv,R,fx,fy,fz,fn[3],ft[3],fpair,shift,energy;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:604:38: warning: variable 'ft' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double rij,rsqinv,R,fx,fy,fz,fn[3],ft[3],fpair,shift,energy;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'int LAMMPS_NS::PairBodyRoundedPolygon::vertex_against_edge(int, int, double, double, double**, double**, double**, LAMMPS_NS::tagint*, LAMMPS_NS::PairBodyRoundedPolygon::Contact*, int&, double&, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:707:24: warning: variable 'nei' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ni, npi, ifirst, nei, iefirst;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:707:29: warning: variable 'iefirst' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int ni, npi, ifirst, nei, iefirst;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:708:11: warning: variable 'npj' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int nj, npj, jfirst, nej, jefirst;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:709:32: warning: variable 'eradi' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double xpi[3], xpj[3], dist, eradi, eradj, rradi, rradj;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp: In member function 'virtual void LAMMPS_NS::FixWallBodyPolygon::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp:341:60: warning: 'wall_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                            contact_list, num_contacts, facc);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polygon.cpp:303:9: warning: 'eradi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (delr > eradi) dz = cylradius;
BUILDSTDERR:          ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp: In member function 'virtual void LAMMPS_NS::PairBodyNparticle::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_nparticle.cpp:327:59: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                             evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::FixWallBodyPolyhedron::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/fix_wall_body_polyhedron.cpp:361:58: warning: 'wall_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                          contact_list, num_contacts, facc);
BUILDSTDERR:                                                           ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolyhedron::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:277:11: warning: variable 'interact' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:        int interact, num_contacts;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'void LAMMPS_NS::PairBodyRoundedPolyhedron::sanity_check()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:2347:22: warning: variable 'x3' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x1[3],x2[3],x3[3],x4[3],h_a[3],h_b[3],d_a,d_b;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:2347:28: warning: variable 'x4' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x1[3],x2[3],x3[3],x4[3],h_a[3],h_b[3],d_a,d_b;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolygon::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:107:15: warning: 'iefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nei,nej,iefirst,jefirst;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:107:7: warning: 'nei' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int nei,nej,iefirst,jefirst;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:106:21: warning: 'ifirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polygon.cpp:106:13: warning: 'npi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:375:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:376:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:377:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:378:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:380:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:381:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp: In member function 'virtual void LAMMPS_NS::BondClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:186:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:187:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:188:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/bond_class2.cpp:189:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:382:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:384:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:385:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:386:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/angle_class2.cpp:387:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp: In member function 'virtual void LAMMPS_NS::DihedralClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:839:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:840:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:841:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:842:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:843:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:844:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:846:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:847:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:848:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_f3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:849:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mbt_r0[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:851:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:852:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:853:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:854:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_r0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:856:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:857:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:858:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:859:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ebt_r0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:861:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f1_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:862:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f2_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:863:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f3_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:864:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:866:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f1_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:867:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f2_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:868:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_f3_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:869:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&at_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:871:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:872:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_theta0_1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:873:67: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aat_theta0_2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:875:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:876:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_r10[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/dihedral_class2.cpp:877:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb13t_r30[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp: In member function 'virtual void LAMMPS_NS::ImproperClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:608:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:609:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:611:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:612:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:613:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_k3[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:614:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:615:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:616:66: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aa_theta0_3[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:310:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:314:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:315:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:316:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:345:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:346:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:347:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2.cpp:348:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp: In member function 'void LAMMPS_NS::ImproperClass2::angleangle(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/improper_class2.cpp:824:58: warning: 'eimproper' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                 delxBD-delxBC,delyBD-delyBC,delzBD-delzBC);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp: In member function 'virtual void LAMMPS_NS::PairBodyRoundedPolyhedron::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:221:21: warning: 'eradi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r > eradi + eradj + cut_inner) continue;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:43: warning: 'iefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:35: warning: 'nei' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:21: warning: 'ifirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY/pair_body_rounded_polyhedron.cpp:124:13: warning: 'npi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ni,nj,npi,npj,ifirst,jfirst,nei,nej,iefirst,jefirst;
BUILDSTDERR:              ^
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp
[ 46%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/fix_wall_colloid.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:366:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:370:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:371:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:372:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:373:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:403:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:404:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:405:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:406:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:407:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:464:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:464:37: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:144:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_cut.cpp:144:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:406:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:410:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:411:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:412:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:443:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:444:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:445:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:446:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:447:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:448:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:449:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:538:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:538:37: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:531:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:531:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:534:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:529:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:176:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:181:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:184:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:184:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:178:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2/pair_lj_class2_coul_long.cpp:178:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:609:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:613:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:614:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:649:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:650:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:651:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagfld,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:652:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:653:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:654:42: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&t_target, sizeof(double),1,fp);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:655:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed, sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:656:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:657:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:658:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:659:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:400:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (comm->me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:404:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a12[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:405:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:406:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:407:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:408:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:438:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:439:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:440:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp: In member function 'virtual void LAMMPS_NS::PairBrownianPoly::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp:295:42: warning: 'a_pu' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_pu);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian_poly.cpp:244:42: warning: 'a_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_sh);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp: In member function 'virtual void LAMMPS_NS::PairBrownian::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:308:42: warning: 'a_pu' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_pu);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_brownian.cpp:240:42: warning: 'a_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Fbmag = prethermostat*sqrt(a_sh);
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual double LAMMPS_NS::PairColloid::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:543:20: warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return factor_lj*phi;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp: In member function 'virtual void LAMMPS_NS::PairColloid::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_colloid.cpp:194:22: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        f[i][2] += delz*fpair;
BUILDSTDERR:                       ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU_poly.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:689:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:693:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:694:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp: In member function 'virtual void LAMMPS_NS::PairLubricate::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:727:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:728:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:729:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagfld,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:730:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:731:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:732:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:733:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:734:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate.cpp:735:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1916:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1920:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1921:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp: In member function 'virtual void LAMMPS_NS::PairLubricateU::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1953:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mu,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1954:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flaglog,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1955:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_inner_global,sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1956:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1957:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1958:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1959:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagHI,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricateU.cpp:1960:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&flagVF,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_lubricate_poly.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID/pair_yukawa_colloid.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/compute_temp_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulDSFCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:147:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:143:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:144:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:148:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_dsf_cs.cpp:143:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:188:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:180:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:185:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:189:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:182:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_long_cs.cpp:182:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp
[ 47%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_wolf_cs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulWolfCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:149:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:146:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_born_coul_wolf_cs.cpp:150:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:186:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:178:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:183:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:186:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:180:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_buck_coul_long_cs.cpp:180:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:168:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:173:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:170:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_coul_long_cs.cpp:170:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/atom_vec_dipole.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:440:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:444:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:445:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:446:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:447:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:476:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:477:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:478:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:479:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:498:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:499:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:500:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:528:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:529:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:530:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:531:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:516:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:540:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:546:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:543:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:239:34: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:237:35: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:235:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:235:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:239:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_cut.cpp:244:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutDipoleLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:70: warning: 'd2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:62: warning: 'd1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:54: warning: 'd0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:47: warning: 'b2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:39: warning: 'b1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:293:31: warning: 'b0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:70: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:62: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:296:54: warning: 'g0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_cut_dipole_long.cpp:301:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongCS::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:183:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:188:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:192:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:185:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL/pair_lj_cut_coul_long_cs.cpp:185:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_freeze.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:351:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:355:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:356:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:357:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongDipoleLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:386:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:387:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:388:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:389:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE/pair_lj_long_dipole_long.cpp:390:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran_region.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hertz_history.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp: In member function 'virtual void LAMMPS_NS::FixPour::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:680:42: warning: 'natom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int ninserted_mols = ninserted_atoms / natom;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:696:35: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        atom->nbonds += onemols[imol]->nbonds * ninserted_mols;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:654:65: warning: 'denstmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            atom->rmass[n] = 4.0*MY_PI/3.0 * radtmp*radtmp*radtmp * denstmp;
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_pour.cpp:503:30: warning: 'radtmp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          coords[0][3] = radtmp;
BUILDSTDERR:                               ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp.o
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp: In member function 'void LAMMPS_NS::FixWallGran::granular(double, double, double, double, double*, double, double*, double*, double*, double*, double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:49: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:36: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1365:23: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz; //Omega_T (eq 29 of Marshall)
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1174:55: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    damp_normal_prefactor = normal_coeffs[1]*damp_normal;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/fix_wall_gran.cpp:1205:23: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      F_pulloff = 4*M_PI*coh*Reff;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:546:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp: In member function 'virtual void LAMMPS_NS::PairGranHookeHistory::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:572:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kn,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:573:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kt,sizeof(double),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:574:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamman,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:575:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gammat,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:576:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&xmu,sizeof(double),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_gran_hooke_history.cpp:577:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dampflag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1254:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1258:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&normal_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1259:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&damping_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1260:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&tangential_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1261:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&roll_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1262:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&twist_model[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1263:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&normal_coeffs[i][j],sizeof(double),4,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1264:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&tangential_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1265:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&roll_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1266:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&twist_coeffs[i][j],sizeof(double),3,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1267:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald.cpp
[ 48%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/ewald_disp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual double LAMMPS_NS::PairGranular::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1645:27: warning: 'magtortwist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[8] = magtortwist;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1643:19: warning: 'fr3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[6] = fr3;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1642:19: warning: 'fr2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[5] = fr2;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1641:19: warning: 'fr1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[4] = fr1;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1644:18: warning: 'fr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    svector[7] = fr;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:49: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:36: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1616:23: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1627:55: warning: 'history' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      magtortwist = -k_twist*history[twist_history_index] - damp_twist*magtwist;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1462:69: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    damp_normal_prefactor = normal_coeffs[itype][jtype][1]*damp_normal;
BUILDSTDERR:                                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1437:40: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sqrt3 = MAX(0, 4*dR - t5 + SIXROOT6*coh*MY_PI*R2/(E*t6));
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1437:50: warning: 'R2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      sqrt3 = MAX(0, 4*dR - t5 + SIXROOT6*coh*MY_PI*R2/(E*t6));
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:385:49: warning: 'allhistory' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            history = &allhistory[size_history*jj];
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:455:71: warning: 'history' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              shrmag = sqrt(history[0]*history[0] + history[1]*history[1] +
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:171:8: warning: 'touch' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *touch,**firsttouch;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:392:30: warning: 'coh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            F_pulloff = 4*MY_PI*coh*Reff;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:55: warning: 'relrot3' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:42: warning: 'relrot2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:556:29: warning: 'relrot1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            magtwist = relrot1*nx + relrot2*ny + relrot3*nz;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:356:75: warning: 'damp_normal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          damp_normal_prefactor = normal_coeffs[itype][jtype][1]*damp_normal;
BUILDSTDERR:                                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:229:34: warning: 'firsthistory' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        allhistory = firsthistory[i];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:228:27: warning: 'firsttouch' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        touch = firsttouch[i];
BUILDSTDERR:                            ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp: In function 'void fft_3d(double (*)[2], double (*)[2], int, fft_plan_3d*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:9: warning: variable 'total' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:15: warning: variable 'length' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d.cpp:69:22: warning: unused variable 'offset' [-Wunused-variable]
BUILDSTDERR:    int i,total,length,offset,num;
BUILDSTDERR:                       ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fft3d_wrap.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/fix_tune_kspace.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual void LAMMPS_NS::PairGranular::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:921:79: warning: 'normal_coeffs_one[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          normal_coeffs[i][j][0] = normal_coeffs[j][i][0] = normal_coeffs_one[0];
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:913:61: warning: 'normal_coeffs_one[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        normal_coeffs[i][j][1] = normal_coeffs[j][i][1] = damp;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:919:60: warning: 'normal_coeffs_one[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                      poiss[i][j],poiss[i][j]);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:924:79: warning: 'normal_coeffs_one[3]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          normal_coeffs[i][j][3] = normal_coeffs[j][i][3] = normal_coeffs_one[3];
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp: In member function 'virtual double LAMMPS_NS::PairGranular::init_one(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR/pair_granular.cpp:1214:10: warning: 'cutoff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return cutoff;
BUILDSTDERR:           ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/gridcomm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm_cg.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:426:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:430:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:431:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:432:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:433:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:434:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:435:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:469:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:470:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:471:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:472:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:473:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:474:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:475:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:567:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:568:28: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:560:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:560:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:563:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:558:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:190:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:182:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:187:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:191:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:184:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_long.cpp:184:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairBornCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:188:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:185:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:184:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:189:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairBornCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:247:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phiborn = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:248:28: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        d[itype][jtype]*r2inv*r6inv - offset[itype][jtype];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:243:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_born_coul_msm.cpp:242:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:403:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:407:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:408:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:409:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:410:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:442:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:443:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:444:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:445:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:446:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:447:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:448:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:538:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:538:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:531:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:531:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:534:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:529:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:183:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:175:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:180:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:183:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:177:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_long.cpp:177:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairBuckCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:184:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:181:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:180:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:184:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairBuckCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:242:30: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:242:53: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:238:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_coul_msm.cpp:237:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:360:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:364:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_a_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:365:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_rho_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:366:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck_c_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:367:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_buck_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuckLongCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:399:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_buck_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:400:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:401:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:402:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:403:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:404:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_buck_long_coul_long.cpp:405:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:296:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:299:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&scale[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:325:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:326:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:327:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:328:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:329:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:376:29: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:378:26: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:378:38: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:376:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:160:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:165:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:162:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_long.cpp:162:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp: In member function 'virtual void LAMMPS_NS::MSM::direct(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1642:47: warning: 'v5sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v5sum += v5_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1641:47: warning: 'v4sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v4sum += v4_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1640:47: warning: 'v3sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v3sum += v3_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1639:47: warning: 'v2sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v2sum += v2_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1638:47: warning: 'v1sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v1sum += v1_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1637:47: warning: 'v0sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v0sum += v0_directn[k] * qtmp2;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:151:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:146:37: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:148:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:148:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:206:31: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:208:26: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:208:38: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_coul_msm.cpp:206:31: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*egamma;
BUILDSTDERR:                                ^
[ 49%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp: In member function 'void LAMMPS_NS::MSM::direct_top(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1997:50: warning: 'v5sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v5sum += v5_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1996:50: warning: 'v4sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v4sum += v4_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1995:50: warning: 'v3sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v3sum += v3_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1994:50: warning: 'v2sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v2sum += v2_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1993:50: warning: 'v1sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v1sum += v1_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/msm.cpp:1992:50: warning: 'v0sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  v0sum += v0_direct_top[k] * qtmp2;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:828:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:832:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:833:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:834:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:835:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:867:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:868:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:869:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:870:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:871:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:872:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:873:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:385:39: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:413:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:972:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:964:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:964:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:967:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:962:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:385:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:419:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:416:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:522:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:514:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:514:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:517:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:512:33: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*egamma;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:896:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:900:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:901:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:902:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:903:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:935:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:936:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:937:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:938:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:939:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:940:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:941:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:216:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:211:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:519:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:547:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:553:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:550:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:220:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:213:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:213:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_msm.cpp:220:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:196:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:201:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:205:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:198:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:198:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmm_coul_long.cpp:205:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmfswCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1049:34: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        philj6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1044:16: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1032:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1032:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1035:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:1030:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:571:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:608:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:614:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:611:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:798:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:802:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:803:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:804:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:835:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:836:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:837:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:838:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:839:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:840:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:841:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:218:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:223:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:239:42: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:220:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:220:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_charmmfsw_coul_long.cpp:237:47: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl12 = r6inv*lj3[itype][jtype]*r6inv -
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:932:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:924:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:924:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:927:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:922:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulMSM::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:364:39: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:388:45: warning: 'fgamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * fgamma;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:364:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:394:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:391:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:511:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:535:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:541:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:538:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulMSM::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:474:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:466:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:466:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:469:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:464:33: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*egamma;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulMSM::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:208:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:203:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:212:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:205:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_msm.cpp:205:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:182:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:187:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:191:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:184:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_coul_long.cpp:184:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:536:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:537:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:538:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:539:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:540:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:542:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:543:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:544:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:545:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:546:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:547:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:548:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:414:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:419:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:416:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:409:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:408:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:336:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:332:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_cut_tip4p_long.cpp:416:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:360:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:364:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:365:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:366:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj_read[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:397:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:398:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:399:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:400:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:401:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:402:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_coul_long.cpp:403:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ewald_order,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1547:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1548:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1549:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1550:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1551:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1553:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1554:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1555:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1556:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1557:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1558:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:475:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:476:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:477:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:478:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:479:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:382:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:387:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:384:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:377:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:376:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:304:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:300:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_tip4p_long.cpp:384:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_middle()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:979:18: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:975:18: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:948:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:944:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:450:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:455:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:452:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:445:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:444:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:372:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:368:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:452:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_cg.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_inner()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:718:18: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:714:18: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:687:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:683:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJLongTIP4PLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1420:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1419:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1321:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pair_lj_long_tip4p_long.cpp:1317:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_disp_tip4p.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_stagger.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/pppm_tip4p.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE/remap_wrap.cpp
[ 50%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp: In member function 'virtual void LAMMPS_NS::FixQEQComb::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp:166:32: warning: 'ilist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,ii,iloop,loopmax,inum,*ilist;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/fix_qeq_comb.cpp:166:26: warning: 'inum' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,ii,iloop,loopmax,inum,*ilist;
BUILDSTDERR:                           ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo_morse.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3398:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3399:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:312:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:315:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&nu[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp: In member function 'virtual void LAMMPS_NS::PairATM::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:340:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_atm.cpp:341:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_triple,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp: In member function 'void LAMMPS_NS::PairADP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_adp.cpp:629:66: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fp,filename,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                                   ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::TORSION(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:1241:64: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ev_tally4(i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp: In member function 'void LAMMPS_NS::PairBOP::read_table(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4981:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);  // skip first comment line
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4982:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4987:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5016:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5084:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);  // skip first comment line
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5086:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5088:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5092:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5097:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5101:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5103:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5105:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5114:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5121:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5125:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5129:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5131:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5135:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5137:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5141:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5143:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5147:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5149:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5153:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5155:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5159:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5161:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5163:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(s,MAXLINE,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5172:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLINE,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5179:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5187:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5195:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5203:28: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(s,MAXLINE,fp);
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5210:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5214:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5231:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLINE,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::Spbicubic(double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:4175:49: warning: 'yn1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (j > 0) df[1] += c * ((double) j) * xn * yn1;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::Sptricubic(double, double, double, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:4215:46: warning: 'zn1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (k > 0) df[2] += c * kr * xn * yn * zn1;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'double LAMMPS_NS::PairAIREBO::piRCSpline(double, double, double, int, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:3283:10: warning: 'piRC' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return piRC;
BUILDSTDERR:           ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:5222:5: warning: 'nws' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(nws==3) {
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:4967:13: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,k,n,m;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::read_lib()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:326:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:327:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:338:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:350:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:358:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:366:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:375:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLIB,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:384:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLIB,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:391:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLIB,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:404:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:422:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:431:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:               fgets(s,MAXLIB,fp);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:446:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:464:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:473:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                fgets(s,MAXLIB,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:488:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:506:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fgets(s,MAXLIB,fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:515:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                fgets(s,MAXLIB,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::comb_zetaterm_d(double, double, double, double, double, double*, double, double*, double, double*, double*, double*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2309:44: warning: 'com6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              {com6+=prefac_ij2*pcrossk*dfc_k;}
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp: In member function 'void LAMMPS_NS::PairAIREBO::FLJ(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:811:21: warning: 'dwij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair = dC*dwij / rij;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:32: warning: 'dwmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:33: warning: 'wmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:27: warning: 'dwkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:27: warning: 'wkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:826:27: warning: 'dwkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:822:28: warning: 'wkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkjS / rikS;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:845:22: warning: 'dwikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:22: warning: 'wikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:855:45: warning: 'rmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:850:45: warning: 'rkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:826:40: warning: 'rkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:845:45: warning: 'rikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:881:76: warning: 'atomm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              v_tally4(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS);
BUILDSTDERR:                                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_airebo.cpp:881:76: warning: 'atomk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::force_zeta(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, double, double, double, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, int, double&, double, double, int, int, int, double, double, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:1794:48: warning: 'prady' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       prady  += 1.0 *  btor[2] * bbtor * att_eng;
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:1793:48: warning: 'pradx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       pradx  += 1.0 *  btor[1] * bbtor * att_eng;
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp: In member function 'void LAMMPS_NS::PairComb3::direct(LAMMPS_NS::PairComb3::Param*, LAMMPS_NS::PairComb3::Param*, int, int, int, double, double, double, double, double, double, double, double, double&, double&, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2799:20: warning: 'dcurlji' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     smf1n += dcurlji*iq*(afbn-fafbnl)*esucon/r;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_comb3.cpp:2802:20: warning: 'dcurlij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:     smf1j += dcurlij*jq*(afbj-fafbnl)*esucon/r;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp: In member function 'double LAMMPS_NS::PairBOP::sigmaBo(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    ,ftmp[2],xtmp[0],xtmp[1],xtmp[2]);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3753:52: warning: 'xtmp[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1763:42: warning: 'dis_jk[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1]
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1763:62: warning: 'dis_jk[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      cosAng_ikj=(dis_ik[0]*dis_jk[0]+dis_ik[1]*dis_jk[1]
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1764:35: warning: 'dis_jk[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                          +dis_ik[2]*dis_jk[2])/(r_ik*r_jk);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1775:51: warning: 'r_jk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      dcA_ikj[2][1]=(-dis_ik[2]*r_ik*r_jk-cosAng_ikj
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:1500:38: warning: 'temp_jk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              bt_sg[nb_jk].temp=temp_jk;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_bop.cpp:3641:30: warning: 'temp_ji' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                else if(temp_kk==temp_ji&&setting==0) {
BUILDSTDERR:                               ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp: In member function 'virtual void LAMMPS_NS::PairEAM::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:469:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:470:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:472:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp: In member function 'void LAMMPS_NS::PairEAM::grab(FILE*, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam.cpp:787:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloy::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:192:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_alloy.cpp:205:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp.o
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFS::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:194:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_fs.cpp:210:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp: In member function 'virtual void LAMMPS_NS::PairEAMCD::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eam_cd.cpp:387:24: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair += D_i * rhojp * t1;
BUILDSTDERR:                         ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp: In member function 'int LAMMPS_NS::PairEIM::grabpair(FILE*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp:970:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_eim.cpp:974:35: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                    ^
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_gw_zbl.cpp
[ 51%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_nb3b_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp: In member function 'void LAMMPS_NS::PairLCBOP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:987:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:993:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:994:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:995:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&gamma_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:996:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&A);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:997:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&B_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:998:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&B_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:999:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&alpha);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1000:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&beta_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1001:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&beta_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1002:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&d);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1003:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1004:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_4);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1005:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&C_6);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1006:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&L);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1007:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&kappa);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1008:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&R_0);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1009:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&R_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1010:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_0);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1011:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_1_LR);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1012:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&r_2_LR);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1013:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&v_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1014:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&v_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1015:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1016:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1017:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&lambda_1);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1018:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&lambda_2);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1019:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&eps);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1020:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);    sscanf(s,"%lg",&delta);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1023:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1032:30: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fgets(s,MAXLINE,fp);
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1039:40: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          while (1) { fgets(s,MAXLINE,fp); if (s[0] != '#') break; }
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1046:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_lcbop.cpp:1052:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAXLINE,fp);
BUILDSTDERR:                           ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_rebo.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_sw.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:579:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:580:60: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      while (line == strchr(line,'#')) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:596:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:614:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:650:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'void LAMMPS_NS::PairPolymorphic::grab(FILE*, int, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:881:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp: In member function 'virtual void LAMMPS_NS::PairPolymorphic::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:262:7: warning: 'emb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (emb > epsilon) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally(i,i,nlocal,newton_pair,evdwl,0.0,0.0,delx,dely,delz);
BUILDSTDERR:                                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_polymorphic.cpp:290:82: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_mod_c.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_tersoff_zbl.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY/pair_vashishta_table.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_break.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_create.cpp
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp: In member function 'int LAMMPS_NS::FixAtomSwap::attempt_semi_grand()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_atom_swap.cpp:391:54: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          atom->v[i][0] *= sqrt_mass_ratio[itype][jtype];
BUILDSTDERR:                                                       ^
[ 52%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp: In member function 'virtual void LAMMPS_NS::FixBondSwap::post_integrate()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:629:44: warning: 'jlast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jangle = 0; jangle < num_angle[jlast]; jangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:607:44: warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jangle = 0; jangle < num_angle[jprev]; jangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:202:25: warning: 'jnext' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:618:44: warning: 'ilast' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (iangle = 0; iangle < num_angle[ilast]; iangle++) {
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:491:39: warning: 'iprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (iprev >= 0) iprevtag = tag[iprev];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:202:7: warning: 'inext' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int inext,iprev,ilast,jnext,jprev,jlast,ibond,iangle,jbond,jangle;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:414:53: warning: 'jnextangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(jnextangletype,i,jnext,jlast) +
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:419:49: warning: 'jangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(jangletype,jprev,j,jnext) -
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:418:53: warning: 'inextangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                angle_eng(inextangletype,i,inext,ilast) -
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:413:56: warning: 'iangletype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              delta += angle_eng(iangletype,iprev,i,jnext) +
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_bond_swap.cpp:457:37: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (jbond = 0; jbond < num_bond[j]; jbond++)
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp: In member function 'virtual void LAMMPS_NS::FixTFMC::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_tfmc.cpp:255:36: warning: 'masstotal' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      group->xcm(igroup,masstotal,cm);
BUILDSTDERR:                                     ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/fix_client_md.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:350:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:354:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:355:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp: In member function 'virtual void LAMMPS_NS::PairDSMC::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:383:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:384:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&max_cell_size,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:385:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:386:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/pair_dsmc.cpp:387:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp: In member function 'double LAMMPS_NS::FixGCMC::energy_full()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MC/fix_gcmc.cpp:2297:11: warning: 'imolecule' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (imolecule == molecule[j]) continue;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp: In member function 'void LAMMPS_NS::Message::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/message.cpp:64:3: warning: 'clientserver' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (clientserver == 1) {
BUILDSTDERR:    ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_md.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp: In member function 'void LAMMPS_NS::Server::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server.cpp:43:3: warning: 'protocol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (protocol == MD) {
BUILDSTDERR:    ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_msd_nongauss.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp: In member function 'void LAMMPS_NS::ServerMC::loop()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:116:28: warning: 'xold[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][2] = xold[2];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:115:28: warning: 'xold[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][1] = xold[1];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:114:28: warning: 'xold[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            x[m][0] = xold[0];
BUILDSTDERR:                             ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:15:0:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/atom.h:300:57: warning: 'atomid' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else if (map_style == 2) return map_find_hash(global);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE/server_mc.cpp:42:10: note: 'atomid' was declared here
BUILDSTDERR:    tagint atomid;
BUILDSTDERR:           ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/compute_ti.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int sizeofint(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:559:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    while (size >= num && num_of_bits < 32) {
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int sizeofints(int, unsigned int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:600:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    while (bytes[num_of_bytes] >= num) {
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'void sendints(int*, int, int, unsigned int*, unsigned int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:654:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (num_of_bits >= num_of_bytes * 8) {
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:655:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (i = 0; i < num_of_bytes; i++) {
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:660:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (i = 0; i < num_of_bytes-1; i++) {
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int receivebits(int*, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:695:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (lastbits < num_of_bits) {
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp: In function 'int xdr3dfcoord(XDR*, float*, int*, float*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:397:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define LASTIDX (sizeof(magicints) / sizeof(int) - 1 )
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:935:23: note: in expansion of macro 'LASTIDX'
BUILDSTDERR:      while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:46:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MYMIN(a,b) ((a) < (b) ? (a) : (b))
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:939:14: note: in expansion of macro 'MYMIN'
BUILDSTDERR:      maxidx = MYMIN(LASTIDX, smallidx + 8) ;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:46:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MYMIN(a,b) ((a) < (b) ? (a) : (b))
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1115:14: note: in expansion of macro 'MYMIN'
BUILDSTDERR:      maxidx = MYMIN(LASTIDX, smallidx + 8) ;
BUILDSTDERR:               ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_efield.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1141:54: warning: 'bitsizeint[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[2] = receivebits(buf, bitsizeint[2]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1140:54: warning: 'bitsizeint[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[1] = receivebits(buf, bitsizeint[1]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/dump_xtc.cpp:1139:54: warning: 'bitsizeint[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          thiscoord[0] = receivebits(buf, bitsizeint[0]);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp: In member function 'virtual void LAMMPS_NS::FixDeposit::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_deposit.cpp:529:56: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else atom->avec->create_atom(ntype+onemols[imol]->type[m],coords[m]);
BUILDSTDERR:                                                         ^
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_gld.cpp
[ 53%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_oneway.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp: In member function 'virtual void LAMMPS_NS::FixEvaporate::pre_exchange()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_evaporate.cpp:324:31: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          } else if (me == proc && i == iatom) {
BUILDSTDERR:                                ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_bcc.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_orient_fcc.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_thermal_conductivity.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_ttm.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/fix_viscosity.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:322:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:326:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:327:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:328:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:329:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:330:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:360:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:361:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:362:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut.cpp:363:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:373:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:377:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:378:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:379:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:380:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:381:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:382:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:414:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:415:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:416:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:417:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:418:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/xdr_compat.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual double LAMMPS_NS::PairNMCutCoulCut::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:478:65: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) -
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:150:58: warning: 'rninv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                          r0n[itype][jtype]*rninv -
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_cut.cpp:152:58: warning: 'rminv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                          r0m[itype][jtype]*rminv) -
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:420:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:424:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&e0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:425:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:426:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&nn[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:427:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&mm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:428:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:461:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:462:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:463:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:464:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:465:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:466:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:467:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairNMCutCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:553:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:553:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:556:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:551:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:563:65: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:         nn[itype][jtype]*r0m[itype][jtype]/pow(r,mm[itype][jtype])) -
BUILDSTDERR:                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairNMCutCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:186:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:191:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:196:50: warning: 'rninv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (mm[itype][jtype]*r0n[itype][jtype]*rninv -
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:197:50: warning: 'rminv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                 nn[itype][jtype]*r0m[itype][jtype]*rminv) - offset[itype][jtype];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:188:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC/pair_nm_cut_coul_long.cpp:188:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp: In member function 'virtual void LAMMPS_NS::AngleCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:248:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:249:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:250:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k_ub[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_charmm.cpp:251:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r_ub[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp: In member function 'virtual void LAMMPS_NS::AngleCosine::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine.cpp:196:70: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    if (comm->me == 0) fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                                       ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_delta.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineSquared::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp:218:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_squared.cpp:219:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp: In member function 'virtual void LAMMPS_NS::AngleHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp:218:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_harmonic.cpp:219:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp: In member function 'virtual void LAMMPS_NS::AngleCosinePeriodic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:249:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:250:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_cosine_periodic.cpp:251:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
[ 54%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_angle.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_bond.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_full.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp: In member function 'virtual void LAMMPS_NS::AngleTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp:292:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/angle_table.cpp:293:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_molecular.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/atom_vec_template.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp: In member function 'virtual void LAMMPS_NS::BondFENE::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:219:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:220:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:221:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene.cpp:222:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp: In member function 'virtual void LAMMPS_NS::BondFENEExpand::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:228:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:229:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:230:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:231:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sigma[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_fene_expand.cpp:232:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp: In member function 'virtual void LAMMPS_NS::BondGromos::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp:171:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_gromos.cpp:172:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp:171:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_harmonic.cpp:172:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp: In member function 'virtual void LAMMPS_NS::BondMorse::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:175:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&d0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:176:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alpha[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_morse.cpp:177:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp: In member function 'virtual void LAMMPS_NS::BondNonlinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:170:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&epsilon[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:171:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_nonlinear.cpp:172:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&lamda[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp: In member function 'virtual void LAMMPS_NS::BondQuartic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:280:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:281:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:282:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&b2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:283:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&rc[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_quartic.cpp:284:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&u0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp: In member function 'virtual void LAMMPS_NS::BondTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp:236:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/bond_table.cpp:237:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 55%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:428:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:429:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:430:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:431:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmm.cpp:432:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weightflag,sizeof(int),1,fp);
BUILDSTDERR:                                         ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:332:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:333:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sign[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_harmonic.cpp:334:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp: In member function 'virtual void LAMMPS_NS::DihedralCharmmfsw::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:471:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:472:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:473:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&shift[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:474:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weight[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_charmmfsw.cpp:475:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&weightflag,sizeof(int),1,fp);
BUILDSTDERR:                                         ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp: In member function 'virtual void LAMMPS_NS::DihedralHelix::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:327:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&aphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:328:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_helix.cpp:329:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cphi[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/fix_cmap.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralMultiHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:322:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:323:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:324:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:325:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a4[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_multi_harmonic.cpp:326:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a5[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp: In member function 'virtual void LAMMPS_NS::DihedralOPLS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:334:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k1[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:335:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:336:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/dihedral_opls.cpp:337:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:338:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:339:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sign[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:340:64: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp: In member function 'virtual void LAMMPS_NS::ImproperCvff::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:208:15: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_cvff.cpp:207:18: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp:279:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_harmonic.cpp:280:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp: In member function 'virtual void LAMMPS_NS::ImproperUmbrella::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:320:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:321:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/improper_umbrella.cpp:322:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingLJ::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:152:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingMorse::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:301:9: warning: 'donor_flag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (donor_flag == 0) type2param[i][j][k] = nparams;
BUILDSTDERR:          ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingMorse::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:122:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual double LAMMPS_NS::PairHbondDreidingLJ::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:511:41: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp: In member function 'virtual double LAMMPS_NS::PairHbondDreidingMorse::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_morse.cpp:414:41: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp: In member function 'virtual void LAMMPS_NS::PairHbondDreidingLJ::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_hbond_dreiding_lj.cpp:374:9: warning: 'donor_flag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (donor_flag == 0) type2param[i][j][k] = nparams;
BUILDSTDERR:          ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:378:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:382:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:383:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:384:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:385:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:439:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:440:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:441:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_inner,sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:442:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:443:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:444:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulCharmm::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:501:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:200:62: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmm::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm.cpp:167:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulCharmmImplicit::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:133:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmm_coul_charmm_implicit.cpp:133:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 56%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:436:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:440:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:441:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:442:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:443:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:473:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:474:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:475:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:476:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:477:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:620:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:624:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:625:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:626:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:662:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:663:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:664:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:665:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:666:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:668:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:669:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:670:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:671:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:672:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:479:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:506:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:507:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:508:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:509:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:510:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:512:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:533:34: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        philj6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:528:16: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          (r3inv - cut_lj3inv)*(r3inv - cut_lj3inv);;
BUILDSTDERR:                 ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/atom_vec_peri.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmfswCoulCharmmfsh::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:195:42: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl6 = -lj4[itype][jtype]*r6inv +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_charmmfsw_coul_charmmfsh.cpp:193:47: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                evdwl12 = r6inv*lj3[itype][jtype]*r6inv -
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:337:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:336:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:264:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_tip4p_cut.cpp:260:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PCut::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:377:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:376:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:304:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE/pair_lj_cut_tip4p_cut.cpp:300:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_damage_atom.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_plasticity_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp: In member function 'virtual void LAMMPS_NS::ComputeDilatationAtom::compute_peratom()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/compute_dilatation_atom.cpp:116:52: warning: 'theta' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (mask[i] & groupbit) dilatation[i] = theta[i];
BUILDSTDERR:                                                     ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/fix_peri_neigh.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriEPS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:569:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:573:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:574:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:575:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:576:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:577:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_eps.cpp:578:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_yieldstress[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp: In member function 'virtual void LAMMPS_NS::PairPeriLPS::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:498:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:499:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:500:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:501:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_lps.cpp:502:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp: In member function 'virtual void LAMMPS_NS::PairPeriPMB::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:423:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:427:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kspring[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:428:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:429:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_pmb.cpp:430:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp: In member function 'virtual void LAMMPS_NS::PairPeriVES::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:551:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:555:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bulkmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:556:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shearmodulus[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:557:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&s00[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:558:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:559:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:560:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_lambdai[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI/pair_peri_ves.cpp:561:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&m_taubi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_dynamic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp: In member function 'virtual int LAMMPS_NS::FixQEq::pack_forward_comm(int, int*, double*, int, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq.cpp:490:10: warning: 'm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return m;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp: In member function 'void LAMMPS_NS::FixPOEMS::readfile(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS/fix_poems.cpp:987:26: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (me == 0) fclose(fp);
BUILDSTDERR:                           ^
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_fire.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_point.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_shielded.cpp
[ 57%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ/fix_qeq_slater.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/compute_event_displace.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_hyper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_prd.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_event_tad.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/hyper.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp: In member function 'virtual void LAMMPS_NS::FixHyperGlobal::pre_reverse(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:307:20: warning: 'r0max' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fbiasr = fbias / r0max / rmax;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:307:34: warning: 'rmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fbiasr = fbias / r0max / rmax;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:228:18: warning: 'jmax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,m,imax,jmax;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_global.cpp:228:13: warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,j,m,imax,jmax;
BUILDSTDERR:              ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/neb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp: In member function 'virtual void LAMMPS_NS::FixHyperLocal::pre_reverse(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_hyper_local.cpp:480:27: warning: 'ijhalf' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      maxhalf[iold] = ijhalf;
BUILDSTDERR:                            ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/prd.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/tad.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp: In member function 'virtual void LAMMPS_NS::FixNEB::min_post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:45: warning: 'lenuntilIm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:45: warning: 'idealPos' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/fix_neb.cpp:616:58: warning: 'meanDist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        prefactor = -dot - kspring*(lenuntilIm-idealPos)/(2*meanDist);
BUILDSTDERR:                                                           ^
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/temper.cpp
[ 58%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA/verlet_split.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_erotate_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_ke_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp.o
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/compute_rigid_local.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rattle.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp: In member function 'virtual void LAMMPS_NS::FixEHEX::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_ehex.cpp:203:48: warning: 'id_shake' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:       fshake = ((FixShake*) modify->fix[id_shake]);
BUILDSTDERR:                                                 ^
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nh_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nph_small.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In constructor 'LAMMPS_NS::FixRigid::FixRigid(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:580:51: warning: 'seed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (langflag) random = new RanMars(lmp,seed + me);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:397:30: warning: 'zflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][2] = zflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:396:30: warning: 'yflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][1] = yflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:395:30: warning: 'xflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          tflag[m-1][0] = xflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:359:34: warning: 'zflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (domain->dimension == 2 && zflag == 1.0)
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:365:30: warning: 'yflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fflag[m-1][1] = yflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:364:30: warning: 'xflag' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fflag[m-1][0] = xflag;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:225:32: warning: 'molecule' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (custom_flag) delete [] molecule;
BUILDSTDERR:                                 ^
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_npt_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nve_small.cpp
[ 59%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_nvt_small.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1483:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1478:23: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1462:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1406:50: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1405:60: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1405:50: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                   ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_shake.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1628:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1615:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1577:40: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1 = x[i][1] + ybox*yprd + zbox*yz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1576:50: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:1576:40: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                         ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_append_atoms.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::setup_bodies_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2224:34: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            radone = lbonus[line[i]].length;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::readfile(int, double*, double**, double**, double**, LAMMPS_NS::imageint*, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2297:67: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer);
BUILDSTDERR:                                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp: In member function 'void LAMMPS_NS::FixRigid::setup_bodies_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2123:31: warning: 'inbody' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (infile && inbody[ibody]) continue;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2104:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2021:38: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          orient[i][0] = lbonus[line[i]].theta - theta_body;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid.cpp:2086:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_msst.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_nphug.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'virtual void LAMMPS_NS::FixRigidSmall::write_restart_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2659:26: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (me == 0) fclose(fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1394:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1389:23: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1374:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK/fix_wall_piston.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1532:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:1519:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/atom_vec_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In constructor 'LAMMPS_NS::FixRigidSmall::FixRigidSmall(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:515:57: warning: 'seed' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (langflag) random = new RanMars(lmp,seed + comm->me);
BUILDSTDERR:                                                          ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/compute_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::setup_bodies_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2380:34: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            radone = lbonus[line[i]].length;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::readfile(int, double**, int*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2466:67: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      eofflag = comm->read_lines_from_file(fp,nchunk,MAXLINE,buffer);
BUILDSTDERR:                                                                    ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_langevin_spin.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp: In member function 'void LAMMPS_NS::FixRigidSmall::setup_bodies_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2264:31: warning: 'inbody' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (infile && inbody[ibody]) continue;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2242:36: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2157:38: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          orient[i][0] = lbonus[line[i]].theta - theta_body;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID/fix_rigid_small.cpp:2224:36: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                     ^
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_neb_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_nve_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_precession_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/fix_setforce_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/min_spin.cpp
[ 60%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/neb_spin.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp: In member function 'virtual void LAMMPS_NS::PairSpinDmi::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:539:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:543:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&DM[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:544:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmx[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:545:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmy[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:546:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_dmz[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:547:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmx[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:548:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmy[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:549:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&vmech_dmz[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:550:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_dmi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp: In member function 'virtual void LAMMPS_NS::PairSpinDmi::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:584:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_dmi_global,sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:585:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_dmi.cpp:586:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp: In member function 'virtual void LAMMPS_NS::PairSpinExchange::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:506:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:510:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J1_mag[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:511:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:512:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:513:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&J2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:514:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_exchange[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp: In member function 'virtual void LAMMPS_NS::PairSpinExchange::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:545:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_exchange_global,sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:546:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_exchange.cpp:547:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp: In member function 'virtual void LAMMPS_NS::PairSpinMagelec::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:523:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:527:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&ME[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:528:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mex[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:529:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mey[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&v_mez[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:531:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_magelec[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp: In member function 'virtual void LAMMPS_NS::PairSpinMagelec::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:561:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_magelec_global,sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:562:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_magelec.cpp:563:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_sna_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp: In member function 'virtual void LAMMPS_NS::PairSpinNeel::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:695:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:699:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:700:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:701:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:702:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&g2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:703:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:704:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q1_mech[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:705:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:706:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&q2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:707:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_spin_neel[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp: In member function 'virtual void LAMMPS_NS::PairSpinNeel::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:741:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_spin_neel_global,sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:742:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN/pair_spin_neel.cpp:743:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snad_atom.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/compute_snav_atom.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/sna.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:477:9: warning: 'ielem' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      int ielem;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:723:53: warning: 'starttime' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (time_guided) schedule_time_guided = endtime - starttime;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP/pair_snap.cpp:521:12: note: 'starttime' was declared here
BUILDSTDERR:      double starttime, endtime;
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp: In constructor 'LAMMPS_NS::FixWallSRD::FixWallSRD(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_wall_srd.cpp:67:33: warning: 'newwall' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        wallwhich[nwall] = newwall;
BUILDSTDERR:                                  ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp: In member function 'void LAMMPS_NS::KimQuery::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:9: warning: variable 'varname' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:19: warning: variable 'function' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/kim_query.cpp:90:30: warning: unused variable 'value' [-Wunused-variable]
BUILDSTDERR:    char *varname, *function, *value;
BUILDSTDERR:                               ^
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM/pair_kim.cpp
[ 61%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp: In member function 'virtual void LAMMPS_NS::FixPythonInvoke::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp:91:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject((PyObject*)pFunc, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp: In member function 'virtual void LAMMPS_NS::FixPythonInvoke::post_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_invoke.cpp:108:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject((PyObject*)pFunc, arglist);
BUILDSTDERR:               ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::big_static()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2966:25: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        c1 = tbonus[tri[i]].c1;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2954:30: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        length = lbonus[line[i]].length;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2938:34: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::big_dynamic()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3049:30: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        inertia = tbonus[tri[i]].inertia;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3036:40: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        biglist[k].theta = lbonus[line[i]].theta;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:3024:34: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                   ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/pair_python.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::reset_velocities()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1017:33: warning: 'dof_tstat' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        tbin = vbin[i].value[0]/(n-dof_tstat) * tfactor;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::init()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:146:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_init, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:164:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_initial_integrate, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::final_integrate()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:182:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_final_integrate, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::initial_integrate_respa(int, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:200:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_initial_integrate_respa, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::final_integrate_respa(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:219:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_final_integrate_respa, arglist);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp: In member function 'virtual void LAMMPS_NS::FixPythonMove::reset_dt()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/fix_python_move.cpp:237:14: warning: unused variable 'result' [-Wunused-variable]
BUILDSTDERR:    PyObject * result = PyEval_CallObject(py_reset_dt, NULL);
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::parameterize()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2683:37: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double *c1 = tbonus[tri[i]].c1;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2703:41: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double length = lbonus[line[i]].length;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:2700:46: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            double *shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                                               ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC/fix_atc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp: In member function 'int LAMMPS_NS::PythonImpl::create_entry(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp:410:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    else if (format && strlen(format) != ninput+noutput)
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp: In member function 'virtual void LAMMPS_NS::PythonImpl::invoke_function(int, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON/python_impl.cpp:320:36: warning: 'pValue' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      PyTuple_SetItem(pArgs,i,pValue);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp: In member function 'void LAMMPS_NS::FixSRD::collisions_multi()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1548:33: warning: 'xbcollfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[2] = xbcollfirst[2];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1547:33: warning: 'xbcollfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[1] = xbcollfirst[1];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1546:33: warning: 'xbcollfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xbcoll[0] = xbcollfirst[0];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1545:33: warning: 'xscollfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[2] = xscollfirst[2];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1544:33: warning: 'xscollfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[1] = xscollfirst[1];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1543:33: warning: 'xscollfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        xscoll[0] = xscollfirst[0];
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1551:29: warning: 'normfirst[2]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[2] = normfirst[2];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1550:29: warning: 'normfirst[1]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[1] = normfirst[1];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1549:29: warning: 'normfirst[0]' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        norm[0] = normfirst[0];
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1576:32: warning: 'typefirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (collidestyle == SLIP && type == SPHERE)
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD/fix_srd.cpp:1581:33: warning: 'jfirst' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          force_wall(v[i],vsnew,j);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp: In member function 'void LAMMPS_NS::ComputeVoronoi::processCell(voro::voronoicell_neighbor&, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:516:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        for (j=0; j<narea.size(); ++j)
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:531:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (neighs != narea.size())
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:548:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:          for( j=0; j<vlist.size(); j+=vlist[j]+1 ) {
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI/compute_voronoi_atom.cpp:592:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (neighs != narea.size())
BUILDSTDERR:                                 ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/fix_bocs.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'double LAMMPS_NS::ComputePressureBocs::get_cg_p_corr(double**, int, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:249:10: warning: 'correction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return correction;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'virtual double LAMMPS_NS::ComputePressureBocs::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:346:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp: In member function 'virtual void LAMMPS_NS::ComputePressureBocs::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS/compute_pressure_bocs.cpp:384:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna2_fene.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dot.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp: In member function 'virtual void LAMMPS_NS::BondOxdnaFene::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:295:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:296:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&Delta[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/bond_oxdna_fene.cpp:297:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/fix_nve_dotc_langevin.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:685:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:832:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:837:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_cxst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:838:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:839:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:840:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:841:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:842:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:843:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:844:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:845:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:847:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:848:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:849:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:850:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:851:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:853:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:854:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:855:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:856:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:857:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:859:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:860:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:861:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:862:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:863:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:865:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:866:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:867:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:868:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:869:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:871:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&AA_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:872:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&BB_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Coaxstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:936:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:937:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_coaxstk.cpp:938:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_excv.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:371:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:457:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:462:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa_dh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:463:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&qeff_dh_pf[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:464:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_dh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:465:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_dh_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:466:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_dh_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp: In member function 'virtual void LAMMPS_NS::PairOxdna2Dh::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:499:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:500:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_dh.cpp:501:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 62%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna2_stk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:831:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:575:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:991:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:996:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_cxst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:717:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:722:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:723:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:724:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_ss_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:725:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_ss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:726:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_ss_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:727:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:728:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:729:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_sb_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:730:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_sb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:731:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_sb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:732:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:733:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:734:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_bb_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:735:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_bb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:736:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_bb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaExcv::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:779:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:780:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_excv.cpp:781:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:997:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:998:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:999:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1000:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1001:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1002:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_cxst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1003:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1004:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1006:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1007:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1008:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1009:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1010:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1012:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1013:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1014:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1015:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1016:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1018:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1019:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1020:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1021:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1022:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1024:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1025:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_cxst6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1026:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1027:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1028:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_cxst6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1030:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst3p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1031:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst3p_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1032:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst3p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1033:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst3p_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1034:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_cxst4p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1035:62: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst4p_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1036:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_cxst4p[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1037:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_cxst4p_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaCoaxstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1107:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1108:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_coaxstk.cpp:1109:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:799:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:978:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:983:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:984:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:985:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:986:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:987:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:988:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:989:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:990:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_hb_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:991:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:992:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:993:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift_hb[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:995:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:996:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:997:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:998:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:999:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1001:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1002:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb2_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1003:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1004:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1005:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1007:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1008:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb3_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1009:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb3_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1010:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1011:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb3_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1013:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1014:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1015:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1016:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1017:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1019:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1020:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb7_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1021:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb7_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1022:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1023:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb7_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1025:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_hb8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1026:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_hb8_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1027:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb8_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1028:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_hb8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1029:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_hb8_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaHbond::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1104:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1105:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_hbond.cpp:1106:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:833:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:995:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1000:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1001:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1002:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1003:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1004:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1005:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1006:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1007:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_st_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1008:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1009:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1010:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift_st[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1012:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1013:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1014:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1015:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1016:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1018:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1019:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st5_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1020:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st5_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1021:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st5[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1022:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st5_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1024:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1025:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_st6_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1026:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st6_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1027:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st6[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1028:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_st6_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1030:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1031:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1032:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1033:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1034:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_st2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1035:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1036:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_st2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1037:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cosphi_st2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaStk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1103:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1104:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_stk.cpp:1105:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_edpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:785:7: warning: variable 'irequest' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int irequest;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:950:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:955:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&k_xst[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:956:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:957:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:958:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:959:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:960:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_lc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:961:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_xst_hc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:962:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst_lo[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:963:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst_hi[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:965:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:966:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst1_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:967:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst1_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:968:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:969:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst1_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:971:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:972:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst2_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:973:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst2_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:974:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:975:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst2_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:977:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:978:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst3_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:979:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst3_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:980:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:981:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst3_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:983:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:984:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst4_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:985:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst4_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:986:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:987:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst4_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:989:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:990:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst7_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:991:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst7_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:992:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst7[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:993:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst7_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:995:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a_xst8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:996:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&theta_xst8_0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:997:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst8_ast[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:998:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&b_xst8[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:999:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&dtheta_xst8_c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp: In member function 'virtual void LAMMPS_NS::PairOxdnaXstk::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1072:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1073:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA/pair_oxdna_xstk.cpp:1074:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_mdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/atom_vec_tdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_edpd_temp_atom.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/compute_tdpd_cc_atom.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_edpd_source.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_dpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_edpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_mvv_tdpd.cpp
[ 63%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/fix_tdpd_source.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:457:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:461:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:462:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:463:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&power[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:464:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:465:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:466:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&powerT[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:467:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cutT[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:470:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&sc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:474:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&kc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:512:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:513:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:514:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd_rhosum.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:352:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:356:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&A_att[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:357:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&B_rep[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:358:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:359:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:360:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_r[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp: In member function 'virtual void LAMMPS_NS::PairMDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:390:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:391:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:392:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_mdpd.cpp:393:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp: In member function 'virtual void LAMMPS_NS::PairEDPD::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:34: warning: 'dQr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Q[j]    -= ( dQc - dQd + dQr );
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:28: warning: 'dQd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            Q[j]    -= ( dQc - dQd + dQr );
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_edpd.cpp:223:28: warning: 'dQc' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:400:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:404:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:405:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:406:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&power[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:407:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:408:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cutcc[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:410:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&kappa[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:411:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&epsilon[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:412:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:              fread(&powercc[i][j][k],sizeof(double),1,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp: In member function 'virtual void LAMMPS_NS::PairTDPD::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:448:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:449:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:450:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO/pair_tdpd.cpp:451:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:383:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:387:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lj_type[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:388:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:389:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:390:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDK::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:420:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:421:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:422:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk.cpp:423:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:474:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:478:49: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lj_type[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:479:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:480:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:481:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSDKCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:513:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:514:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:515:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:516:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:517:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:518:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_long.cpp:519:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp: In member function 'virtual void LAMMPS_NS::AngleSDK::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:335:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:336:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/angle_sdk.cpp:337:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&repscale[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK/pair_lj_sdk_coul_msm.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/colvarproxy_lammps.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp: In function 'void write_group(FILE*, int, LAMMPS_NS::Atom*, LAMMPS_NS::Group*, int, int, int, FILE*, FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp:133:25: warning: 'recvlist' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (num > 0) delete[] recvlist;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp: In member function 'void LAMMPS_NS::Group2Ndx::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/group_ndx.cpp:167:80: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        write_group(fp,gid,atom,group,comm->me,comm->nprocs,world,screen,logfile);
BUILDSTDERR:                                                                                 ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_saed.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp: In member function 'void LAMMPS_NS::Ndx2Group::command(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/ndx_group.cpp:130:37: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          name = find_section(fp,NULL);
BUILDSTDERR:                                      ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/compute_xrd.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp: In member function 'virtual void LAMMPS_NS::FixColvars::setup(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS/fix_colvars.cpp:543:33: warning: unused variable 'id' [-Wunused-variable]
BUILDSTDERR:      std::vector<int>           &id = *(proxy->modify_atom_ids());
BUILDSTDERR:                                  ^
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION/fix_saed_vtk.cpp
[ 64%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/atom_vec_dpd.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/compute_dpd_atom.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_dpd_energy.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_cv.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp: In member function 'void LAMMPS_NS::FixEOStable::read_table(LAMMPS_NS::FixEOStable::Table*, LAMMPS_NS::FixEOStable::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:216:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:218:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:219:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:225:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:235:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table.cpp:237:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_shardlow.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp: In member function 'void LAMMPS_NS::FixEOStableRX::read_table(LAMMPS_NS::FixEOStableRX::Table*, LAMMPS_NS::FixEOStableRX::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:435:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:437:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:438:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:444:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:472:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_eos_table_rx.cpp:474:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/fix.h:17:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.h:23,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:19:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp: In member function 'virtual void LAMMPS_NS::FixRX::post_constructor()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/pointers.h:35:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:  #define MAX(A,B) ((A) > (B) ? (A) : (B))
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:324:24: note: in expansion of macro 'MAX'
BUILDSTDERR:          tmpmaxstrlen = MAX(tmpmaxstrlen,strlen(word));
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp: In member function 'void LAMMPS_NS::FixRX::initSparse()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:549:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (sparseKinetics_inu[i][idx] >= nu_bin.size())
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:567:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:              if (sparseKinetics_inu[i][idx] >= nu_bin.size())
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/fix_rx.cpp:583:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 1; i < nu_bin.size(); ++i)
BUILDSTDERR:                                      ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nbin_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_2d_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/nstencil_half_bin_3d_newton_ssa.cpp
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp: In member function 'virtual void LAMMPS_NS::NPairHalfBinNewtonSSA::build(LAMMPS_NS::NeighList*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:209:54: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                         tag[j]-tagprev);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:207:68: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/npair_half_bin_newton_ssa.cpp:207:52: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                    which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                     ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:319:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:381:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:385:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:386:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:387:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdt::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:416:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&temperature,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:417:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:418:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt.cpp:419:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 65%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:412:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:482:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:486:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:487:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:488:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&kappa[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:489:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp: In member function 'virtual void LAMMPS_NS::PairDPDfdtEnergy::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:519:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:520:34: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&seed,sizeof(int),1,fp);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_dpd_fdt_energy.cpp:521:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'void LAMMPS_NS::PairMultiLucy::read_table(LAMMPS_NS::PairMultiLucy::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:365:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:367:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:368:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:374:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:387:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:389:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:708:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:709:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:973:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:977:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'virtual void LAMMPS_NS::PairExp6rx::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1003:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1004:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1005:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1006:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::read_table(LAMMPS_NS::PairMultiLucyRX::Table*, char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:510:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);                         // no match, skip section
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:512:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:513:64: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp);
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:519:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:532:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line,MAXLINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:534:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucyRX::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:853:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:854:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp: In member function 'virtual void LAMMPS_NS::PairMultiLucy::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:177:24: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          f[i][2] += delz*fpair;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy.cpp:189:52: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (rho[i]*rho[i] < tb->innersq || rho[j]*rho[j] < tb->innersq)
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp: In member function 'void LAMMPS_NS::PairExp6rx::getMixingWeights(int, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&) const':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1223:32: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1237:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1216:32: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1230:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1223:5: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction2 < -MY_EPSILON || nMolecules2 < -MY_EPSILON){
BUILDSTDERR:      ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1237:5: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld2 < -MY_EPSILON || nMoleculesOld2 < -MY_EPSILON){
BUILDSTDERR:      ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1216:5: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fraction1 < -MY_EPSILON || nMolecules1 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_exp6_rx.cpp:1230:5: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if(fractionOld1 < -MY_EPSILON || nMoleculesOld1 < -MY_EPSILON){
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp: In member function 'void LAMMPS_NS::PairMultiLucyRX::getMixingWeights(int, double&, double&, double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1015:29: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = nMolecules2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1014:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = nMoleculesOld2;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1010:27: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = fraction2;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1009:33: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = fractionOld2;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1013:29: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = nMolecules1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1012:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = nMoleculesOld1;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1008:27: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = fraction1;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_multi_lucy_rx.cpp:1007:33: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = fractionOld1;
BUILDSTDERR:                                  ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/compute_temp_drude.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp: In member function 'void LAMMPS_NS::PairTableRX::getMixingWeights(int, double&, double&, double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:579:29: warning: 'nMolecules2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = nMolecules2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:578:35: warning: 'nMoleculesOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = nMoleculesOld2;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:574:27: warning: 'fraction2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2 = fraction2;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:573:33: warning: 'fractionOld2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite2old = fractionOld2;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:577:29: warning: 'nMolecules1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = nMolecules1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:576:35: warning: 'nMoleculesOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = nMoleculesOld1;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:572:27: warning: 'fraction1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1 = fraction1;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD/pair_table_rx.cpp:571:33: warning: 'fractionOld1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      mixWtSite1old = fractionOld1;
BUILDSTDERR:                                  ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_langevin_drude.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::init_style()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:363:7: warning: unused variable 'irequest' [-Wunused-variable]
BUILDSTDERR:    int irequest = neighbor->request(this,instance_me);
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:494:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:498:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:499:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:500:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&polar[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:501:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&thole[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:503:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:539:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:540:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:541:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&thole_global,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:542:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:543:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:544:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:545:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:546:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:547:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp: In member function 'int LAMMPS_NS::FixDrudeTransform<inverse>::pack_forward_comm(int, int*, double*, int, int*) [with bool inverse = false]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp:293:13: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              buf[m++] = x[j][2] + dz;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp: In member function 'int LAMMPS_NS::FixDrudeTransform<inverse>::pack_forward_comm(int, int*, double*, int, int*) [with bool inverse = true]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/fix_drude_transform.cpp:293:13: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutTholeLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:671:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:664:78: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (drudetype[type[i]] != NOPOL_TYPE && drudetype[type[j]] != NOPOL_TYPE &&
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:666:27: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul += factor_e * dcoul;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:666:27: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:660:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:660:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:663:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:658:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTholeLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:229:50: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  drudetype[type[j]] != NOPOL_TYPE && j != di_closest){
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:230:33: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:193:30: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:230:33: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:222:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:227:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:224:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:235:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:225:25: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_lj_cut_thole_long.cpp:224:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/atom_vec_electron.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:315:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:319:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&polar[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:320:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&thole[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:321:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp: In member function 'virtual void LAMMPS_NS::PairThole::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:351:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&thole_global,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:352:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:353:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE/pair_thole.cpp:354:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_atom_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_ke_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_deform_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_eff.cpp
[ 66%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/compute_temp_region_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_langevin_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nh_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nph_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_npt_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nve_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp.o
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_nvt_sllod_eff.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/fix_temp_rescale_eff.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/compute_fep.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/fix_adapt_fep.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:969:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:972:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          if (me == 0) fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp: In member function 'virtual void LAMMPS_NS::PairEffCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:996:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:997:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF/pair_eff_cut.cpp:998:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:276:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:280:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:281:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:310:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:311:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:313:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:314:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:315:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairCoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_cut_soft.cpp:363:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                 ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:300:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:304:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:331:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:332:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:334:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:335:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:336:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:375:82: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lam1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_coul_long_soft.cpp:376:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
[ 67%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:384:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:388:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:389:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:390:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:391:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:392:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:427:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:428:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:429:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:431:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:432:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:433:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:434:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:435:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:841:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:845:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:846:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:847:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:848:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&eps14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:849:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma14[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:884:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:885:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:886:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:888:45: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_inner,sizeof(double),1,fp);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:889:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:890:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:891:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:892:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:500:37: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (2.0/(denlj*sqrt(denlj)) - 3.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:495:78: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e *lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulCutSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_cut_soft.cpp:143:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCharmmCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:982:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:974:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:975:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:77:10: warning: unused variable 'fraction' [-Wunused-variable]
BUILDSTDERR:    double fraction;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:493:10: warning: unused variable 'fraction' [-Wunused-variable]
BUILDSTDERR:    double fraction,forcecoul,forcelj,phicoul,philj;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:401:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:405:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:406:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:407:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:408:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:442:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:443:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:444:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:446:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:447:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:448:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:449:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:450:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJClass2CoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:524:37: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (2.0/(denlj*sqrt(denlj)) - 3.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:518:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:517:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2CoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:160:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_coul_long_soft.cpp:161:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:528:71: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:44: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:550:66: warning: 'fprefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:58: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:549:53: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCharmmCoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:188:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:181:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_charmm_coul_long_soft.cpp:182:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2Soft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:323:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:327:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:328:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:329:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:330:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJClass2Soft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:362:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:363:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:364:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:365:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:366:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_class2_soft.cpp:367:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:380:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:384:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:385:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:386:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:387:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:388:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:423:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:424:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:425:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:427:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:428:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:429:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:430:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:431:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:797:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:801:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:802:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:803:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:804:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:838:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:839:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:840:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphac,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:842:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:843:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:844:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:845:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:846:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:497:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:492:79: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulCutSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:148:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_cut_soft.cpp:144:80: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:658:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:662:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:663:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:664:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:665:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:698:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nlambda,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:699:40: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&alphalj,sizeof(double),1,fp);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:701:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:702:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:703:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:704:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:524:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:525:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:526:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:527:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:528:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:530:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:531:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:532:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:533:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:534:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutCoulLongSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:928:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:920:81: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      prefactor = force->qqrd2e * lj1[itype][jtype] * atom->q[i]*atom->q[j] / denc;
BUILDSTDERR:                                                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:921:29: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor*erfc;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual double LAMMPS_NS::PairLJCutSoft::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:756:31: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:493:71: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eprefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:44: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:510:66: warning: 'fprefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) forcecoul -= (1.0-factor_coul)*fprefactor;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:58: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:509:53: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              forcecoul = fprefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutTIP4PLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:396:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:395:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:323:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_tip4p_long_soft.cpp:319:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutSoft::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_soft.cpp:413:61: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                               evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairLJCutCoulLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:176:39: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (1.0/(denlj*denlj) - 1.0/denlj) - offset[itype][jtype];
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:169:70: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_lj_cut_coul_long_soft.cpp:170:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD/dump_h5md.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSoft::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:316:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:320:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:321:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:322:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:323:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&lambda[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_morse_soft.cpp:324:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_manifoldforce.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:461:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeO,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:462:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeH,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:463:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeB,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:464:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&typeA,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:465:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&qdist,sizeof(double),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp: In member function 'virtual void LAMMPS_NS::PairTIP4PLongSoft::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:364:29: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH2;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:363:29: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              vlist[n++] = jH1;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:291:18: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fH[0];
BUILDSTDERR:                   ^
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP/pair_tip4p_long_soft.cpp:287:18: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fH[0];
BUILDSTDERR:                   ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nve_manifold_rattle.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/fix_nvt_manifold_rattle.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_cylinder_dent.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_dumbbell.cpp
[ 68%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_ellipsoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_factory.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_gaussian_bump.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_plane_wiggle.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_spine.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid_shared.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_torus.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp: In member function 'virtual void LAMMPS_NS::user_manifold::manifold_thylakoid::checkup()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD/manifold_thylakoid.cpp:63:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for( int i = 0; i < parts.size(); ++i ){
BUILDSTDERR:                                     ^
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_final.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_dens_init.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_force.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_funcs.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp: In constructor 'LAMMPS_NS::MEAM::MEAM(LAMMPS_NS::Memory*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_impl.cpp:46:156: warning: operation on '((LAMMPS_NS::MEAM*)this)->LAMMPS_NS::MEAM::Ec_meam[i][j]' may be undefined [-Wsequence-point]
BUILDSTDERR:        Ec_meam[i][j] = re_meam[i][j] = alpha_meam[i][j] = delta_meam[i][j] = Ec_meam[i][j] = ebound_meam[i][j] = attrac_meam[i][j] = repuls_meam[i][j] = 0.0;
BUILDSTDERR:                                                                                                                                                             ^
[ 69%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_global.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp: In member function 'double LAMMPS_NS::MEAM::phi_meam(double, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp:446:21: warning: 'rho0_2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rhobar2 = rho02 / rho_bkgd2 * G2;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_done.cpp:445:21: warning: 'rho0_1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      rhobar1 = rho01 / rho_bkgd1 * G1;
BUILDSTDERR:                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/meam_setup_param.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_linalg.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:394:13: warning: variable 'dp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:     double f,dp;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:375:18: warning: variable 'alm' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:   double alp = al,alm = al;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:158:19: warning: variable 'dr' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double x0,x1,dx,dr;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:187:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:203:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:246:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:306:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:329:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:331:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:334:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:343:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:345:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:358:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:109:32: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,sizeof(line),in);
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:119:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_readpot.cpp:123:34: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,sizeof(line),in);
BUILDSTDERR:                                   ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/mgpt_splinetab.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp: In member function 'void LAMMPS_NS::PairMEAMC::read_files(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC/pair_meamc.cpp:589:69: warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      meam_inst->meam_setup_param(which,value,nindex,index,&errorflag);
BUILDSTDERR:                                                                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::compute_x(const int*, const int* const*, double*, double*, double*, double*, int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:24: warning: unused variable 'mx' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:27: warning: unused variable 'itag' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:594:32: warning: unused variable 'jtag' [-Wunused-variable]
BUILDSTDERR:    int i,j,k,m,ix,jx,kx,mx,itag,jtag,p;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:10: warning: unused variable 'nbc' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:20: warning: unused variable 'tbl' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:599:30: warning: unused variable 'tbm' [-Wunused-variable]
BUILDSTDERR:    double nbc = 0.0,tbl = 0.0,tbm = 0.0;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:600:13: warning: unused variable 'lmax_local' [-Wunused-variable]
BUILDSTDERR:    const int lmax_local = lmax;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:609:10: warning: variable 't0' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double t0,t1;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:609:13: warning: variable 't1' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    double t0,t1;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:618:18: warning: unused variable 'tsort' [-Wunused-variable]
BUILDSTDERR:    double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0;
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:618:42: warning: unused variable 'tlookup' [-Wunused-variable]
BUILDSTDERR:    double tx0,tx1,tsort = 0.0,tpair = 0.0,tlookup = 0.0;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:620:10: warning: unused variable 'ntsort' [-Wunused-variable]
BUILDSTDERR:    double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:620:36: warning: unused variable 'ntlookup' [-Wunused-variable]
BUILDSTDERR:    double ntsort = 0.0,ntpair = 0.0,ntlookup = 0.0;
BUILDSTDERR:                                     ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'virtual void LAMMPS_NS::PairMGPT::coeff(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:1838:9: warning: variable 'volpres_tag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      int volpres_tag = 0,precision_tag = 0,nbody_tag = 0;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:1838:25: warning: variable 'precision_tag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:      int volpres_tag = 0,precision_tag = 0,nbody_tag = 0;
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::hamltn_5_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2253:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2288:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2316:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2337:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2149:35: warning: operation on '(*(M + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2150:61: warning: operation on '(*(Mx + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2151:61: warning: operation on '(*(My + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2152:61: warning: operation on '(*(Mz + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2351:3: note: in expansion of macro 'MAKE_ELEMENT_5'
BUILDSTDERR:    MAKE_ELEMENT_5(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: In member function 'void LAMMPS_NS::PairMGPT::hamltn_7_raw(double, double, double, double (*)[8], double (*)[8], double (*)[8], double (*)[8], double*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 64u))[1]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2473:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(1,1);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 128u))[2]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2578:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(2,2);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 192u))[3]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2668:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(3,3);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 256u))[4]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2743:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(4,4);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 320u))[5]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2803:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(5,5);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 384u))[6]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2847:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(6,6);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2168:35: warning: operation on '(*(M + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      M [j][i] = M[i][j] =  fl  *tmp;                                  \
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2169:61: warning: operation on '(*(Mx + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mx[j][i] = Mx[i][j] = fl_x*tmp + fl_ri*(tmpx - x*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2170:61: warning: operation on '(*(My + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      My[j][i] = My[i][j] = fl_y*tmp + fl_ri*(tmpy - y*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2171:61: warning: operation on '(*(Mz + 448u))[7]' may be undefined [-Wsequence-point]
BUILDSTDERR:      Mz[j][i] = Mz[i][j] = fl_z*tmp + fl_ri*(tmpz - z*tmpsum);        \
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:2877:3: note: in expansion of macro 'MAKE_ELEMENT_7'
BUILDSTDERR:    MAKE_ELEMENT_7(7,7);
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShift::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:227:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:228:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&kcost[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:229:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&ksint[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift.cpp:230:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:         fread(&theta[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineShiftExp::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:259:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&umin[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:260:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&a[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:261:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&cost[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:262:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&sint[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_cosine_shift_exp.cpp:263:63: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:           fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                                ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp: In member function 'virtual void LAMMPS_NS::AngleFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:234:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:235:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:236:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier.cpp:237:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp: In member function 'virtual void LAMMPS_NS::AngleDipole::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp:208:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_dipole.cpp:209:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&gamma0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp: In member function 'virtual void LAMMPS_NS::AngleFourierSimple::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:240:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:241:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_fourier_simple.cpp:242:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&N[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShift::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:180:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:181:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift.cpp:182:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp: In member function 'virtual void LAMMPS_NS::AngleQuartic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:235:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:236:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:237:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/angle_quartic.cpp:238:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_ackland_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp: In member function 'virtual void LAMMPS_NS::BondHarmonicShiftCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:182:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:183:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/bond_harmonic_shift_cut.cpp:184:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r1[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 70%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_basal_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_cnp_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_entropy_atom.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_cylinder.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp: In member function 'virtual double LAMMPS_NS::ComputePressureGrem::compute_scalar()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_pressure_grem.cpp:97:42: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        scalar = (temperature->dof * boltz * t +
BUILDSTDERR:                                           ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_stress_mop_profile.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/compute_temp_rotate.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp: In member function 'virtual void LAMMPS_NS::DihedralCosineShiftExp::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:326:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&umin[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:327:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&a[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:328:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cost[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:329:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sint[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_cosine_shift_exp.cpp:330:60: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp: In member function 'virtual void LAMMPS_NS::DihedralFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:370:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:385:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(k[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:386:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(multiplicity[i],sizeof(int),nterms[i],fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_fourier.cpp:387:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp: In member function 'virtual void LAMMPS_NS::DihedralNHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp:322:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_nharmonic.cpp:332:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(a[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                               ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp: In member function 'virtual void LAMMPS_NS::DihedralQuadratic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp:329:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_quadratic.cpp:330:59: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&phi0[1],sizeof(double),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                            ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp: In member function 'virtual void LAMMPS_NS::DihedralSpherical::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:761:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&nterms[1],sizeof(int),atom->ndihedraltypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:781:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(Ccoeff[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:782:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:783:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:784:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(phi_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:785:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:786:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:787:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta1_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:788:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_mult[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:789:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_shift[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_spherical.cpp:790:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fread(theta2_offset[i],sizeof(double),nterms[i],fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp: In member function 'virtual void LAMMPS_NS::DihedralTable::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp:1026:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table.cpp:1027:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT/pair_mgpt.cpp:576:13: warning: 'void tr_count(const double*, const double*, double*, const double*, double*, const double*, double*)' defined but not used [-Wunused-function]
BUILDSTDERR:  static void tr_count(const double * restrict A,
BUILDSTDERR:              ^
[ 71%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_addtorque.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp: In member function 'virtual void LAMMPS_NS::DihedralTableCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp:1019:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabstyle,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/dihedral_table_cut.cpp:1020:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tablength,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp: In member function 'virtual void LAMMPS_NS::FixAveCorrelateLong::end_of_step()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ave_correlate_long.cpp:506:53: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (fileend > 0) ftruncate(fileno(fp),fileend);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::read(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:2763:22: warning: variable 'edgeflag' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    int equivflag = 0, edgeflag = 0, bondflag = 0, customedgesflag = 0;
BUILDSTDERR:                       ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_electron_stopping.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::dedup_mega_gloves(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1836:27: warning: 'dedup_size' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    for (int i = dedup_size-1; i > 0; --i) { //dedup_size
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::limit_bond(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1997:79: warning: 'i_statted_tags' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (stabilization_flag == 1) i_statted_tags[atom->map(temp_limit_glove[i])] = 0;
BUILDSTDERR:                                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:1974:15: warning: 'temp_limit_glove' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      delete [] temp_limit_glove;
BUILDSTDERR:                ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ffl.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp: In member function 'void LAMMPS_NS::FixBondReact::unlimit_bond()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_bond_react.cpp:2032:57: warning: 'i_statted_tags' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (stabilization_flag == 1) i_statted_tags[i] = 1;
BUILDSTDERR:                                                          ^
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_filter_corotate.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_flow_gauss.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_gle.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_grem.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_imd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ipi.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_nvk.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_pimd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_rhok.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_smd.cpp
[ 72%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_srp.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ti_spring.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp: In constructor 'LAMMPS_NS::FixTTMMod::FixTTMMod(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:123:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:124:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:128:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:129:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:133:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:134:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:138:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:143:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:144:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:148:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:149:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:153:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:154:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:158:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:159:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:163:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:164:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:168:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:169:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:173:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:174:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:178:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:179:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:183:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:184:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:188:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:189:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:193:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:194:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:198:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:199:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:203:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:204:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:208:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:209:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:213:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:214:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:218:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:219:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:223:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:224:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:228:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_ttm_mod.cpp:229:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(linee,MAXLINE,fpr_2);
BUILDSTDERR:                              ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_ees.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/fix_wall_region_ees.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp: In member function 'virtual void LAMMPS_NS::ImproperCossq::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp:306:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_cossq.cpp:307:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp: In member function 'virtual void LAMMPS_NS::ImproperFourier::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:331:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:332:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:333:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C1[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:334:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&C2[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_fourier.cpp:335:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&all[1],sizeof(int),atom->nimpropertypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp: In member function 'virtual void LAMMPS_NS::ImproperRing::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp:331:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_ring.cpp:332:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistance::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp:252:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/improper_distance.cpp:253:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:287:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rme[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:288:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmae[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:289:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp: In member function 'virtual void LAMMPS_NS::PairCoulDiel::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:316:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:317:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_diel.cpp:318:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:308:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:312:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:313:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rho[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:314:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:315:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairBuckMDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:344:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:345:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:346:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_buck_mdf.cpp:347:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:304:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmae[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:305:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp: In member function 'virtual void LAMMPS_NS::PairCoulShield::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:331:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:332:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_coul_shield.cpp:333:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp: In member function 'virtual void LAMMPS_NS::PairAGNI::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (evflag) ev_tally_xyz_full(i,0.0,0.0,fxtmp,fytmp,fztmp,delx,dely,delz);
BUILDSTDERR:                                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:222:78: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp: In member function 'void LAMMPS_NS::PairAGNI::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:462:70: warning: 'wantdata' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      } else if (params && (wantdata >=0) && (nwords == params[wantdata].numeta+3)) {
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_agni.cpp:432:26: warning: 'curparam' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      } else if ((curparam >=0) && (nwords == 1) && (strcmp(words[0],"endVar") == 0)) {
BUILDSTDERR:                           ^
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_drip.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp
[ 73%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_edip_multi.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp: In member function 'void LAMMPS_NS::PairE3B::presetParam(int, bool&, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp:619:17: warning: 'lconv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    bondL *= lconv*BOND_DELTA;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_e3b.cpp:613:14: warning: 'econv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    e2 *= econv;
BUILDSTDERR:               ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_extep.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_ilp_graphene_hbn.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_full.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:308:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:312:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&hgauss[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:313:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rmh[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:314:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigmah[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:315:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp: In member function 'virtual void LAMMPS_NS::PairGaussCut::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:344:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:345:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_gauss_cut.cpp:346:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_kolmogorov_crespi_z.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lebedeva_z.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_list.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:307:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:311:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&aparm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:312:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&bparm[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:313:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:314:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJ_AB_MDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lennard_mdf.cpp:341:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:833:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:837:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:838:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:839:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&shift[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:840:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:872:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:873:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:874:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:875:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:876:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:877:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:878:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJExpandCoulLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:969:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      philj = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:961:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:961:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:964:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:959:31: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc;
BUILDSTDERR:                                ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:315:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:319:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:320:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:321:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_inner[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:322:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp: In member function 'virtual void LAMMPS_NS::PairLJMDF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_mdf.cpp:349:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::compute_outer(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:45: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:531:37: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:59: warning: 'expm2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:555:54: warning: 'grij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                forcecoul = prefactor * (erfc + EWALD_F*grij*expm2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:561:50: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = ptable[itable] + fraction*dptable[itable];
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:558:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = vtable[itable] + fraction*dvtable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:489:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:493:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:494:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:495:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:496:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_coul[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:497:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&scale[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:526:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:527:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul_global,sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:528:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::read_file(const char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:444:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:450:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:480:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*, bool)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:644:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:647:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:653:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(line, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:660:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_spline.cpp:664:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJExpandCoulLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:188:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:193:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:197:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:190:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual void LAMMPS_NS::PairLJSFDipoleSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:280:25: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_expand_coul_long.cpp:190:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:279:18: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rsq*rcutlj2inv+
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:37: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:270:38: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:29: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:45: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:270:46: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:37: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:268:49: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:272:29: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:277:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:                           ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp: In member function 'virtual double LAMMPS_NS::PairLJSFDipoleSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:625:17: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:624:10: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        rsq*rcutlj2inv+
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:622:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:29: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:615:30: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:21: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:21: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:617:37: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:615:38: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_lj_sf_dipole_sf.cpp:613:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::read_file(const char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:473:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp: In member function 'void LAMMPS_NS::PairMEAMSWSpline::SplineFunction::parse(FILE*, LAMMPS_NS::Error*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:605:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:611:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:617:33: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:          fgets(line, MAXLINE, fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_meam_sw_spline.cpp:621:41: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:                  fgets(line, MAXLINE, fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:311:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:315:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:316:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:317:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:318:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&c[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:319:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&rr[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:320:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp: In member function 'virtual void LAMMPS_NS::PairMomb::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:352:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:353:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&sscale,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:354:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&dscale,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:355:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_momb.cpp:356:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 74%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_tersoff_table.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:277:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:281:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&d0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:282:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:283:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&r0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:284:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp: In member function 'virtual void LAMMPS_NS::PairMorseSmoothLinear::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:311:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_morse_smooth_linear.cpp:312:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_grem.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:699:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:704:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&a0[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:705:48: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp: In member function 'virtual void LAMMPS_NS::PairSRP::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:733:43: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_global,sizeof(double),1,fp);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:734:36: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bptype,sizeof(int),1,fp);
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:735:35: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&btype,sizeof(int),1,fp);
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:736:33: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&min,sizeof(int),1,fp);
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:737:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&midpoint,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/pair_srp.cpp:738:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&exclude,sizeof(int),1,fp);
BUILDSTDERR:                                      ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC/temper_npt.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp: In member function 'virtual void LAMMPS_NS::AngleClass2P6::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:388:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:389:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:390:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k3[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:391:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k4[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:392:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k5[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:393:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k6[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:395:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:396:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:397:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&bb_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:399:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:400:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:401:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_class2_p6.cpp:402:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ba_r2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:336:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:337:61: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&multiplicity[1],sizeof(int),atom->nangletypes,fp);
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:338:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&th0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp: In member function 'virtual void LAMMPS_NS::AngleCosineBuck6d::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:180:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/angle_cosine_buck6d.cpp:165:33: warning: 'r32inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      fpair = forcebuck6d * r32inv;
BUILDSTDERR:                                  ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp: In member function 'virtual void LAMMPS_NS::ImproperInversionHarmonic::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp:319:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kw[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/improper_inversion_harmonic.cpp:320:57: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&w0[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                          ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/dynamical_matrix.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:419:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:423:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:424:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:425:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:426:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:427:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha_ij[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:428:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:461:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&vdwl_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:462:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:463:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:464:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:465:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:466:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:452:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:456:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d1[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:457:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d2[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:458:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d3[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:459:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&buck6d4[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:460:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&alpha_ij[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:461:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:495:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&vdwl_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:496:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&coul_smooth,sizeof(double),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:497:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:498:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:499:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:500:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:501:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussDSF::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:193:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] -
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:195:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:188:51: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp: In member function 'virtual double LAMMPS_NS::PairBuck6dCoulGaussDSF::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:558:63: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   rsq*f_shift_ij[itype][jtype]);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:557:34: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phicoul = prefactor * (erfcc - r*e_shift_ij[itype][jtype] -
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_dsf.cpp:552:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck6d = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairBuck6dCoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:71: warning: 'ealpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:614:66: warning: 'erfa' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:608:47: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      phibuck6d = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairBuck6dCoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:72: warning: 'erfa' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:213:77: warning: 'ealpha' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor*erfa;
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF/pair_buck6d_coul_gauss_long.cpp:207:51: warning: 'ebuck6d' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ebuck6d - offset[itype][jtype];
BUILDSTDERR:                                                    ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_alloy_types.cpp
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_canonical_coloured.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp: In member function 'void LAMMPS_NS::FixPhonon::GaussJordan(int, std::complex<double>*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp:788:14: warning: 'irow' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int i,icol,irow,j,k,l,ll,idr,idc;
BUILDSTDERR:               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON/fix_phonon.cpp:827:22: warning: 'icol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      idr = icol*n+icol;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp: In function 'int get_neighbours(void*, size_t, size_t, int, size_t*, int32_t*, double (*)[3])':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp:191:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (atom_index < data->nlocal) {
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/compute_ptm_atom.cpp:205:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (j == atom_index)
BUILDSTDERR:               ^
[ 75%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_convex_hull_incremental.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_deformation_gradient.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_data.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_graph_tools.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_index.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_initialize_data.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_neighbour_ordering.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_normalize_vertices.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_polar.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_quat.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_structure_matcher.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM/ptm_voronoi_cell.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qbmsst.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB/fix_qtb.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/compute_spec_atom.cpp
[ 76%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReax::pertype_parameters(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp:219:53: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fscanf(pf,"%d %lg %lg %lg",&itype,&v1,&v2,&v3);
BUILDSTDERR:                                                      ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_reaxc_species.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReax::pre_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/fix_qeq_reax.cpp:513:22: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      qeq_time = t_end - t_start;
BUILDSTDERR:                       ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_allocate.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bond_orders.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp: In member function 'virtual void LAMMPS_NS::PairReaxC::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/pair_reaxc.cpp:543:31: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      data->timing.nbrs = t_end - t_start;
BUILDSTDERR:                                ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_forces.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_hydrogen_bonds.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp: In function 'char Read_Control_File(char*, control_params*, output_controls*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_control.cpp:119:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp: In function 'char Read_Force_Field(FILE*, reax_interaction*, control_params*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:54:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:57:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:76:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:88:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:93:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:94:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:95:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:148:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:174:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:193:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:212:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:232:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( s, MAX_LINE, fp );
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:317:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:327:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:331:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:358:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(s,MAX_LINE,fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:479:23: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(s,MAX_LINE,fp);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:484:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:540:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:545:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(s,MAX_LINE,fp);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:598:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:603:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:669:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( s, MAX_LINE, fp );
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_ffield.cpp:679:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( s, MAX_LINE, fp );
BUILDSTDERR:                              ^
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_init_md.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_io_tools.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_list.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp
[ 77%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_multi_body.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_nonbonded.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_reset_tools.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Tridiagonal_Solve(const double*, const double*, double*, double*, double*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:40:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for(i = 1; i < n; i++){
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Natural_Cubic_Spline(LAMMPS_NS::Error*, const double*, const double*, cubic_spline_coef*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:67:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 2; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:71:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:75:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-2; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:79:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:86:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i ){
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp: In function 'void Complete_Cubic_Spline(LAMMPS_NS::Error*, const double*, const double*, double, double, cubic_spline_coef*, unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:117:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:121:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:125:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 0; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:130:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n-1; ++i )
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_lookup.cpp:135:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for( i = 1; i < n; ++i ){
BUILDSTDERR:                    ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_system_props.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_tool_box.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_torsion_angles.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_traj.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_valence_angles.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC/reaxc_vector.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/pair_sdpd_taitwater_isothermal.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp: In member function 'void LAMMPS_NS::FixRigidMeso::set_xv()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:337:50: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][1] += xcm[ibody][1] - ybox*yprd - zbox*yz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:336:60: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:336:50: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        x[i][0] += xcm[ibody][0] - xbox*xprd - ybox*xy - zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp: In member function 'void LAMMPS_NS::FixRigidMeso::set_v()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:457:40: warning: 'yz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x1 = x[i][1] + ybox*yprd + zbox*yz;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:456:50: warning: 'xz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_rigid_meso.cpp:456:40: warning: 'xy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          x0 = x[i][0] + xbox*xprd + ybox*xy + zbox*xz;
BUILDSTDERR:                                         ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp: In member function 'virtual void LAMMPS_NS::FixMesoMove::initial_integrate(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:709:61: warning: 'dz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (zvarstyle == EQUAL) x[i][2] = xoriginal[i][2] + dz;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:678:61: warning: 'dy' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (yvarstyle == EQUAL) x[i][1] = xoriginal[i][1] + dy;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:647:61: warning: 'dx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (xvarstyle == EQUAL) x[i][0] = xoriginal[i][0] + dx;
BUILDSTDERR:                                                              ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/atom_vec_meso.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp: In constructor 'LAMMPS_NS::FixMesoMove::FixMesoMove(LAMMPS_NS::LAMMPS*, int, char**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD/fix_meso_move.cpp:174:24: warning: 'iarg' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (strcmp(arg[iarg],"units") == 0) {
BUILDSTDERR:                         ^
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_e_atom.cpp
[ 78%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_rho_atom.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:435:24: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:438:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:489:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);  if (verbose) printf ("%s",ptr);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:493:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:501:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:510:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:528:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:542:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:565:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);  if (verbose) printf ("%s",ptr);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:568:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:621:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:633:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:655:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:668:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:675:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:695:26: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(ptr,MAXLINE,fp);
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:698:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:708:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:719:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:722:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:727:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:735:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:738:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:745:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:748:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:758:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:761:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:766:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:792:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:795:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:803:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:813:27: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:    fgets( ptr, MAXLINE, fp);
BUILDSTDERR:                            ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/compute_meso_t_atom.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/fix_meso_stationary.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_heatconduction.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_idealgas.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_lj.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:694:3: warning: 'test' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    if (test == 0) {
BUILDSTDERR:    ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_rhosum.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'void LAMMPS_NS::PairSMTBQ::tabqeq()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:1458:70: warning: 'bCoeff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:1458:37: warning: 'aCoeff' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (r > rc) {dij = aCoeff *square(r- rc-nang) *exp(bCoeff*r);
BUILDSTDERR:                                      ^
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH/pair_sph_taitwater_morris.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_force_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_heat_flux_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_mol_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_pe_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY/compute_stress_tally.cpp
[ 79%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_temp_uef.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp: In member function 'void LAMMPS_NS::PairSMTBQ::Charge()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:2594:61: warning: 'gp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      QOxInit=max(QOxInit, -0.98* params[1].qform *nQEqcall[gp]/nQEqaall[gp])   ;
BUILDSTDERR:                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ/pair_smtbq.cpp:2813:24: warning: 't_init' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      dt = t_end - t_init;
BUILDSTDERR:                         ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/dump_cfg_uef.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp: In member function 'virtual void LAMMPS_NS::ComputePressureUef::compute_vector()':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/compute_pressure_uef.cpp:141:33: warning: 'ke_tensor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          vector[i] = (ke_tensor[i] + virial[i]) * inv_volume * nktv2p;
BUILDSTDERR:                                  ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nh_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_npt_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/fix_nvt_uef.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF/uef_utils.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp: In member function 'virtual void LAMMPS_NS::AngleCross::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:282:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kss[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:283:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kbs0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:284:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&kbs1[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:285:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r00[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:286:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r01[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                        ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_cross.cpp:287:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp.o
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp: In member function 'virtual void LAMMPS_NS::AngleMM3::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp:229:54: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/angle_mm3.cpp:230:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp: In member function 'virtual void LAMMPS_NS::BondMM3::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp:182:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k2[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/bond_mm3.cpp:183:53: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&r0[1],sizeof(double),atom->nbondtypes,fp);
BUILDSTDERR:                                                      ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp: In member function 'virtual void LAMMPS_NS::ImproperSQDistHarm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp:261:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_sqdistharm.cpp:262:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp: In member function 'virtual void LAMMPS_NS::ImproperDistHarm::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp:261:56: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&k[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/improper_distharm.cpp:262:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&chi[1],sizeof(double),atom->nimpropertypes,fp);
BUILDSTDERR:                                                           ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_data.cpp
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/thr_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:525:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:529:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::read_restart(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:525:58: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        if (me == 0) fread(&setflag[i][j],sizeof(int),1,fp);
BUILDSTDERR:                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:531:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:532:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:565:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:566:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:567:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&truncw,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:568:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:569:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:570:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:571:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:572:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:529:52: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&epsilon[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:530:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&sigma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:531:50: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&gamma[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:532:51: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:            fread(&cut_lj[i][j],sizeof(double),1,fp);
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::read_restart_settings(FILE*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:565:46: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_lj_global,sizeof(double),1,fp);
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:566:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&cut_coul,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:567:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&truncw,sizeof(double),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:568:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&offset_flag,sizeof(int),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:569:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&mix_flag,sizeof(int),1,fp);
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:570:39: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tail_flag,sizeof(int),1,fp);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:571:44: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&ncoultablebits,sizeof(int),1,fp);
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:572:41: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fread(&tabinner,sizeof(double),1,fp);
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairLJSwitch3CoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:660:19: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      forcelj = expb*lj1[itype][jtype]*r-6.0*lj4[itype][jtype]*r6inv;
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:694:36: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    fforce = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:677:18: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:668:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:668:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:671:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:666:32: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc1;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:684:7: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual double LAMMPS_NS::PairMM3Switch3CoulGaussLong::single(int, int, int, int, double, double, double, double&)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:679:17: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:695:36: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    fforce = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:679:35: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:670:28: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:670:40: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:673:56: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (factor_coul < 1.0) phicoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:668:32: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        phicoul = prefactor*erfc1;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:685:7: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairLJSwitch3CoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:195:30: warning: 'erfc2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:186:36: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc1;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:195:30: warning: 'prefactor2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:191:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:213:41: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:196:24: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:203:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:188:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_lj_switch3_coulgauss_long.cpp:188:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp: In member function 'virtual void LAMMPS_NS::PairMM3Switch3CoulGaussLong::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:199:23: warning: 'expb' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:198:30: warning: 'erfc2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:189:36: warning: 'erfc1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc1;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:198:30: warning: 'prefactor2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            ecoul += prefactor2*erfc2*factor_coul;
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:194:60: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:215:41: warning: 'forcecoul2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_coul*forcecoul2 + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:199:41: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            evdwl = expb-lj4[itype][jtype]*r6inv-offset[itype][jtype];
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:205:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (r>cut_lj[itype][jtype]-truncw) {
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:191:46: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF/pair_mm3_switch3_coulgauss_long.cpp:191:34: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                   ^
[ 80%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_sphere_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/domain_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_class2_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_charmm_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_delta_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_periodic_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_squared_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_harmonic_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_table_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_sdk_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_cosine_shift_exp_omp.cpp
[ 81%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_dipole_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_fourier_simple_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/angle_quartic_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_class2_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_gromos_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp: In member function 'void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp:140:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type];
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp: In member function 'void LAMMPS_NS::BondFENEOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_omp.cpp:140:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp: In member function 'void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp:144:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          ebond += 4.0*epsilon[type]*sr6*(sr6-1.0) + epsilon[type];
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp: In member function 'void LAMMPS_NS::BondFENEExpandOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_fene_expand_omp.cpp:144:9: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_morse_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_nonlinear_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_table_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp: In member function 'void LAMMPS_NS::BondQuarticOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp:152:26: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (rsq < TWO_1_3) ebond += 4.0*sr6*(sr6-1.0) + 1.0;
BUILDSTDERR:                           ^
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_omp.cpp
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_harmonic_shift_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp: In member function 'void LAMMPS_NS::BondQuarticOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/bond_quartic_omp.cpp:152:26: warning: 'sr6' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 82%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_class2_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_charmm_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_harmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_helix_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_multi_harmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_opls_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_cosine_shift_exp_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_fourier_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_nharmonic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_quadratic_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/dihedral_table_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_gravity_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_neigh_history_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_sphere_omp.cpp
[ 83%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nve_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sllod_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_sphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nph_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_npt_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nvt_asphere_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_comb_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_peri_neigh_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp.o
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nph_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_npt_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nve_omp.cpp
[ 84%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nvt_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_class2_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp: In member function 'virtual void LAMMPS_NS::FixQEqReaxOMP::pre_force(int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_qeq_reax_omp.cpp:351:22: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      qeq_time = t_end - t_start;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:497:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:492:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:476:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp: In member function 'void LAMMPS_NS::FixRigidOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:674:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_omp.cpp:661:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:438:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:433:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:418:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp: In member function 'void LAMMPS_NS::FixRigidSmallOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:612:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_small_omp.cpp:599:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_harmonic_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_umbrella_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:235:7: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:235:7: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        p = 2.0 - p;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        pd = -pd;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp: In member function 'void LAMMPS_NS::ImproperCvffOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_BOND = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cvff_omp.cpp:236:7: warning: 'pd' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_cossq_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_fourier_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/improper_ring_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/respa_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/ewald_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/msm_cg_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_omp.cpp
[ 85%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_cg_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_disp_tip4p_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pppm_tip4p_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:50:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:49:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_omp.cpp:49:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_atomonly_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:120:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:118:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:51:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:118:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_bin_ghost_omp.cpp:51:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:122:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:120:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:50:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:120:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_multi_omp.cpp:50:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_atomonly_newton_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:114:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:112:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:51:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:112:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_omp.cpp:51:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:114:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:112:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:51:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:112:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_full_nsq_ghost_omp.cpp:51:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:118:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:116:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:50:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:116:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_omp.cpp:50:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp
[ 86%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:127:52: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                       tag[j]-tagprev);
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:125:66: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:54:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:125:50: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newtoff_ghost_omp.cpp:54:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:120:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:149:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:50:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:149:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_omp.cpp:50:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:124:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:50:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:122:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:49:43: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:122:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_bin_newton_tri_omp.cpp:49:38: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,imol,iatom;
BUILDSTDERR:                                       ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:125:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:123:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:123:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newtoff_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:121:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:51:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:156:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:50:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:156:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_omp.cpp:50:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:134:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:132:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:132:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_multi_newton_tri_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,which,ns,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:114:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:53:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:112:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:52:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:112:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_omp.cpp:52:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:122:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:56:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:120:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:55:36: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:120:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newtoff_ghost_omp.cpp:55:31: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,which,imol,iatom;
BUILDSTDERR:                                ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:132:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:52:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:130:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:51:46: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,which,imol,iatom;
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:130:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_nsq_newton_omp.cpp:51:41: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,which,imol,iatom;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:149:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:56:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:147:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:147:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:166:55: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:55:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:191:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:58:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:95:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:192:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:190:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newtoff_omp.cpp:82:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:151:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:193:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:193:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:167:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:54:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:237:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:57:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:94:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:238:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:236:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_omp.cpp:81:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:156:50: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                     tag[j]-tagprev);
BUILDSTDERR:                                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:55:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:154:64: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                                 ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:54: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:154:48: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:49: note: 'imol' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:173:55: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:54:40: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,k,n,itype,jtype,ibin,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:198:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:57:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:224:9: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          errorflag = 2;
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:94:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_bin_newton_tri_omp.cpp:81:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:146:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:57:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:144:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:47: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:144:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:42: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:161:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:56:33: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:185:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:59:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:98:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:186:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:184:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newtoff_omp.cpp:85:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp: In function '<built-in>':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:164:48: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                   tag[j]-tagprev);
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:58:10: note: 'tagprev' was declared here
BUILDSTDERR:    tagint tagprev;
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:162:62: warning: 'iatom' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:57: note: 'iatom' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:162:46: warning: 'imol' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              which = find_special(onemols[imol]->special[iatom],
BUILDSTDERR:                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:52: note: 'imol' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:180:53: warning: 'n_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (which == 0) neighptr_middle[n_middle++] = j;
BUILDSTDERR:                                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:57:43: note: 'n_middle' was declared here
BUILDSTDERR:    int i,j,n,itype,jtype,itag,jtag,n_inner,n_middle,imol,iatom;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:204:45: warning: 'neighptr_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        firstneigh_middle[i] = neighptr_middle;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:60:34: note: 'neighptr_middle' was declared here
BUILDSTDERR:    int *neighptr,*neighptr_inner,*neighptr_middle;
BUILDSTDERR:                                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/lammps-stable_5Jun2019/src/neigh_list.h:18:0,
BUILDSTDERR:                  from /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:17:
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/my_page.h:174:5: warning: 'ipage_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      index += n;
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:99:16: note: 'ipage_middle' was declared here
BUILDSTDERR:    MyPage<int> *ipage_middle;
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:205:36: warning: 'numneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        numneigh_middle[i] = n_middle;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:22: note: 'numneigh_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:40: warning: 'firstneigh_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:203:26: warning: 'ilist_middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        ilist_middle[i] = i;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_respa_nsq_newton_omp.cpp:86:8: note: 'ilist_middle' was declared here
BUILDSTDERR:    int *ilist_middle,*numneigh_middle,**firstneigh_middle;
BUILDSTDERR:         ^
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_bin_newton_tri_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_half_size_nsq_newton_omp.cpp
[ 87%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newtoff_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/npair_halffull_newton_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_beck_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:177:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:177:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_wolf_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:              ^
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_debye_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_dsf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_cut_omp.cpp:155:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_wolf_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_dpd_tstat_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj96_cut_omp.cpp
[ 88%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp: In member function 'void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:147:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = epsilon[itype][jtype]*
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:145:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp: In member function 'void LAMMPS_NS::PairLJCubicOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:147:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = epsilon[itype][jtype]*
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cubic_omp.cpp:145:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:157:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:154:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:157:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_omp.cpp:154:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j]*rinv;
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_expand_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:160:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:157:13: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_debye_omp.cpp:160:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:181:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:174:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:181:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:174:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_dsf_omp.cpp:180:13: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:180:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulWolfOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:180:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_wolf_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_linear_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp: In member function 'void LAMMPS_NS::PairLJGromacsCoulGromacsOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_gromacs_coul_gromacs_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp: In member function 'void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:147:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp: In member function 'void LAMMPS_NS::PairLJSmoothOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 'tsq' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:150:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_smooth_omp.cpp:147:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv -
BUILDSTDERR:              ^
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_soft_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_ufm_omp.cpp
[ 89%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp: In member function 'void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a * tb->e[itable] + b * tb->e[itable+1] +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:185:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp: In member function 'void LAMMPS_NS::PairTableOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a * tb->e[itable] + b * tb->e[itable+1] +
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:187:13: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_table_omp.cpp:185:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp.o
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gayberne_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_resquared_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp: In member function 'void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp: In member function 'void LAMMPS_NS::PairZBLOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_zbl_omp.cpp:146:13: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_cut_omp.cpp:159:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_brownian_poly_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:170:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:171:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:170:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:171:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_class2_coul_long_omp.cpp:175:13: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:211:19: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR,
BUILDSTDERR:                    ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fztmp += delz*fpair;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:211:19: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (EVFLAG) ev_tally_thr(this, i,j,nlocal,NEWTON_PAIR,
BUILDSTDERR:                    ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lubricate_poly_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        fztmp += delz*fpair;
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_yukawa_colloid_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp: In member function 'void LAMMPS_NS::PairColloidOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_colloid_omp.cpp:204:7: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hertz_history_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:252:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:259:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:252:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:250:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:254:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_dipole_cut_omp.cpp:259:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_omp.cpp
[ 90%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gran_hooke_history_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:169:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBornCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_born_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:170:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_long_omp.cpp:173:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairBuckCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:165:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:164:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_coul_msm_omp.cpp:168:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_buck_long_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:179:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:174:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:179:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_omp.cpp:176:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:169:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:174:34: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:169:13: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*egamma;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:13: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_msm_omp.cpp:171:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:186:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:191:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:195:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:186:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:191:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:195:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_omp.cpp:188:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:186:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:181:15: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:190:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:186:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:181:15: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:190:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp:183:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_coul_long_omp.cpp
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:461:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:466:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:461:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:466:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:463:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:455:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:454:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:469:23: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            if (EVFLAG) ev_tally_list_thr(this,key,vlist,v,ecoul,alpha,thr);
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:440:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:436:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:383:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_omp.cpp:379:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 91%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:415:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:411:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:438:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:443:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:438:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:443:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:440:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:432:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:431:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:415:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:411:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:356:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_omp.cpp:352:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_adp_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_inner(int, int, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1335:28: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1331:28: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1304:28: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1300:28: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_middle(int, int, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1597:28: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1593:28: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1566:28: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1562:28: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp: In member function 'void LAMMPS_NS::PairAIREBOOMP::TORSION_thr(int, int, int, int, double*, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:999:77: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ev_tally4_thr(this,i,j,k,l,evdwl,fi,fj,fk,delil,del34,delkl,thr);
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp: In member function 'void LAMMPS_NS::PairAIREBOOMP::FLJ_thr(int, int, int, int, int, double*, LAMMPS_NS::ThrData*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:569:21: warning: 'dwij' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair = dC*dwij / rij;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:32: warning: 'dwmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:33: warning: 'wmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:27: warning: 'dwkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:27: warning: 'wkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:584:27: warning: 'dwkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:580:28: warning: 'wkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkjS / rikS;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:603:22: warning: 'dwikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:22: warning: 'wikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:613:45: warning: 'rmjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair3 = dC*wikS*wkmS*dwmjS / rmjS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:608:45: warning: 'rkmS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkmS*wmjS / rkmS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:584:40: warning: 'rkjS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair2 = dC*wikS*dwkjS / rkjS;
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:603:45: warning: 'rikS' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair1 = dC*dwikS*wkmS*wmjS / rikS;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:639:84: warning: 'atomm' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              v_tally4_thr(atomi,atomj,atomk,atomm,fi,fj,fk,delimS,deljmS,delkmS,thr);
BUILDSTDERR:                                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_omp.cpp:639:84: warning: 'atomk' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_airebo_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_comb_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_omp.cpp
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyOMP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:167:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:187:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_alloy_omp.cpp:200:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:            fpair += D_i * rhojp * t1;
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eim_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSOMP::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:139:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:140:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:141:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:142:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:167:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:189:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_fs_omp.cpp:205:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_rebo_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_sw_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp: In member function 'void LAMMPS_NS::PairEAMCDOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CDEAMVERSION = 2]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_eam_cd_omp.cpp:481:11: warning: 'D_i' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_mod_c_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 92%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_zbl_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_vashishta_table_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o
BUILDSTDERR: /usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switch/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
es -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_nm_cut_coul_long_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1073:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1078:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1075:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          else k = atom->map(klist[kk]+tagprev);
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1067:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1066:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1030:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1010:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulCharmmOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_omp.cpp:180:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingLJOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_lj_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_charmm_implicit_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1052:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1048:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:995:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:991:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp: In member function 'void LAMMPS_NS::PairHbondDreidingMorseOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_hbond_dreiding_morse_omp.cpp:193:45: warning: 'tagprev' may be used uninitialized in this function [-Wmaybe-uninitialized]
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_lps_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:421:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:420:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:404:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:400:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:345:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_cut_omp.cpp:341:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:392:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:391:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PCutOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:375:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:371:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:316:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_cut_omp.cpp:312:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_peri_pmb_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_omp.cpp
[ 93%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_long_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sdk_coul_msm_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:243:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (drudetype[type[i]] != NOPOL_TYPE &&
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:240:15: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:237:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:242:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:250:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:243:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (drudetype[type[i]] != NOPOL_TYPE &&
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'dcoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:240:15: warning: 'qj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = qi*qj * table;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:245:15: warning: 'factor_e' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += factor_e * dcoul;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:237:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:242:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:250:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3i[jtype]*r6inv-lj4i[jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:239:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTholeLongOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:201:13: warning: 'di_closest' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (j != di_closest){
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_thole_long_omp.cpp:208:15: warning: 'dqi' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                dcoul = qqrd2e * dqi * dqj / r;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_charmm_coul_long_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:157:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:154:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:179:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:173:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:157:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_cut_soft_omp.cpp:154:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:179:13: warning: 'denlj' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = lj1[itype][jtype] * 4.0 * epsilon[itype][jtype] *
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:173:13: warning: 'denc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              prefactor = qqrd2e * lj1[itype][jtype] * qtmp*q[j] / denc;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_coul_long_soft_omp.cpp:174:13: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp: In member function 'void LAMMPS_NS::PairAGNIOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'delz' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (EVFLAG) ev_tally_xyz_full_thr(this,i,0.0,0.0,
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'dely' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_agni_omp.cpp:159:17: warning: 'delx' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:436:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:435:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:407:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:406:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_coul_diel_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:419:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:415:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:360:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_cut_tip4p_long_soft_omp.cpp:356:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp: In member function 'void LAMMPS_NS::PairTIP4PLongSoftOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:390:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:386:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:331:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tip4p_long_soft_omp.cpp:327:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_edip_omp.cpp
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_gauss_cut_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 94%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_meam_spline_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFOMP::eval(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:279:15: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j] * r3inv * pqfac * pidotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:277:15: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:281:15: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp * r3inv * qpfac * pjdotr;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_sf_dipole_sf_omp.cpp:286:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype])+
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_morse_smooth_linear_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_tersoff_table_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_nh_asphere_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp: In member function 'virtual void LAMMPS_NS::PairReaxCOMP::compute(int, int)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_reaxc_omp.cpp:226:31: warning: 't_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      data->timing.nbrs = t_end - t_start;
BUILDSTDERR:                                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bond_orders_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_nonbonded_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_bonds_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_xv_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:779:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:774:31: warning: 'lbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          lbonus[line[i]].theta = theta;
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:758:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_torsion_angles_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp: In function 'int Init_ListsOMP(reax_system*, control_params*, simulation_data*, storage*, reax_list**, mpi_datatypes*, char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_init_md_omp.cpp:56:12: warning: variable 'comm' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    MPI_Comm comm;
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp: In member function 'void LAMMPS_NS::FixRigidNHOMP::set_v_thr() [with int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:956:21: warning: 'tbonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          inertiaatom = tbonus[tri[i]].inertia;
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/fix_rigid_nh_omp.cpp:943:15: warning: 'ebonus' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          shape = ebonus[ellipsoid[i]].shape;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_forces_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_multi_body_omp.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/reaxc_valence_angles_omp.cpp
[ 95%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_morse_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_ufm_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  ecoul = prefactor*erfc;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:17: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:40: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  ecoul = prefactor*erfc;
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:206:17: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:17: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_charmm_coul_long_opt.cpp:208:40: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                  table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongOpt::eval() [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:175:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:180:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:184:13: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_coul_long_opt.cpp:177:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp.o
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_long_coul_long_opt.cpp
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:409:23: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:405:23: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:432:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:437:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 1; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:38: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:432:15: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:437:36: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:434:15: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 1]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_alloy_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 1; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:426:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:425:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_eam_fs_opt.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp: In member function 'void LAMMPS_NS::PairLJCutTIP4PLongOpt::eval() [with int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0; int <anonymous> = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:409:23: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:405:23: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:350:23: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2][0] += fHx;
BUILDSTDERR:                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT/pair_lj_cut_tip4p_long_opt.cpp:346:23: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1][0] += fHx;
BUILDSTDERR:                        ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/fix_gpu.cpp
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pppm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp: In member function 'void LAMMPS_NS::PairBeckGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_beck_gpu.cpp:240:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp: In member function 'void LAMMPS_NS::PairBornGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_gpu.cpp:242:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 96%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:281:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:278:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:278:72: warning: 'v_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_gpu.cpp:282:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_gpu.cpp:237:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckCoulCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp:249:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_cut_gpu.cpp:249:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_debye_gpu.cpp
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_dsf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_tstat_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp: In member function 'void LAMMPS_NS::PairDPDGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_dpd_gpu.cpp:405:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 0; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp: In member function 'void LAMMPS_NS::PairGaussGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gauss_gpu.cpp:230:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJ96CutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj96_cut_gpu.cpp:226:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCubicGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:234:40: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                (PHIS + DPHIDS*t - A3*t*t*t/6.0);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:231:74: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv * (lj3[itype][jtype]*r6inv - lj4[itype][jtype]);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cubic_gpu.cpp:238:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_gpu.cpp:236:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_cut_gpu.cpp:248:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDebyeGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:252:72: warning: 'screening' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:252:54: warning: 'rinv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = factor_coul * qqrd2e * qtmp*q[j] * rinv * screening;
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_debye_gpu.cpp:255:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulDSFGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:282:40: warning: 'erfcc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:269:28: warning: 'forcecoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          fpair = (forcecoul + factor_lj*forcelj) * r2inv;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:276:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_dsf_gpu.cpp:282:43: warning: 'r' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor * (erfcc - r*e_shift - rsq*f_shift);
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 0; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp: In member function 'void LAMMPS_NS::PairLJExpandGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_gpu.cpp:239:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 97%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp: In member function 'void LAMMPS_NS::PairLJGromacsGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp:235:71: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              eswitch = t*t*t*(ljsw3[itype][jtype] + ljsw4[itype][jtype]*t);
BUILDSTDERR:                                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_gromacs_gpu.cpp:241:74: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairMIECutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_mie_cut_gpu.cpp:225:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 1; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp: In member function 'void LAMMPS_NS::PairMorseGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_morse_gpu.cpp:221:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp: In member function 'void LAMMPS_NS::PairSoftGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_soft_gpu.cpp:232:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp: In member function 'void LAMMPS_NS::PairTableGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:333:49: warning: 'b' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:333:22: warning: 'a' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ((a*a*a-a)*tb->e2[itable] + (b*b*b-b)*tb->e2[itable+1]) *
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:330:45: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = tb->e[itable] + fraction*tb->de[itable];
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_table_gpu.cpp:338:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 1; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2029:15: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH2;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2028:15: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = jH1;
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1979:34: warning: 'key' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (EVFLAG && vflag) key += 2;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1959:26: warning: 'n' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                vlist[n++] = iH2;
BUILDSTDERR:                           ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp: In member function 'void LAMMPS_NS::PairUFMGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_ufm_gpu.cpp:235:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 1; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp: In member function 'void LAMMPS_NS::PairYukawaGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_gpu.cpp:224:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp: In member function 'void LAMMPS_NS::PairLJLongTIP4PLongOMP::eval_outer(int, int, LAMMPS_NS::ThrData*) [with int EVFLAG = 0; int EFLAG = 0; int NEWTON_PAIR = 0; int CTABLE = 1; int LJTABLE = 1; int ORDER1 = 1; int ORDER6 = 0]':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:2001:13: warning: 'jH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1997:13: warning: 'jH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[jH1].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1931:13: warning: 'iH2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH2].x += fHx;
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP/pair_lj_long_tip4p_long_omp.cpp:1927:13: warning: 'iH1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              f[iH1].x += fHx;
BUILDSTDERR:              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp: In member function 'void LAMMPS_NS::PairZBLGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp:232:59: warning: 't' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                      (sw3[itype][jtype] + sw4[itype][jtype]*t);
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_zbl_gpu.cpp:237:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp: In member function 'void LAMMPS_NS::PairGayBerneGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp:335:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_gayberne_gpu.cpp:338:63: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                        -r12[0],-r12[1],-r12[2]);
BUILDSTDERR:                                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp: In member function 'void LAMMPS_NS::PairRESquaredGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp:310:45: warning: 'one_eng' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (eflag) evdwl = factor_lj*one_eng;
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_resquared_gpu.cpp:313:73: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                                        fforce[2],-r12[0],-r12[1],-r12[2]);
BUILDSTDERR:                                                                          ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp: In member function 'void LAMMPS_NS::PairLJClass2GPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_gpu.cpp:223:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJClass2CoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:272:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:273:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:276:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_class2_coul_long_gpu.cpp:276:45: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r3inv-lj4[itype][jtype]) -
BUILDSTDERR:                                              ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp: In member function 'void LAMMPS_NS::PairYukawaColloidGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_yukawa_colloid_gpu.cpp:235:68: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,0.0,fpair,delx,dely,delz);
BUILDSTDERR:                                                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp: In member function 'void LAMMPS_NS::PairColloidGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp:302:22: warning: 'fpair' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        f[i][2] += delz*fpair;
BUILDSTDERR:                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_colloid_gpu.cpp:298:36: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (eflag) evdwl *= factor_lj;
BUILDSTDERR:                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:325:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:326:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:330:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_cs_gpu.cpp:329:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
[ 98%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulWolfCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:284:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv +
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:281:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:281:72: warning: 'v_sh' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                                         ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_wolf_cs_gpu.cpp:285:30: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                               ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp: In member function 'void LAMMPS_NS::PairCoulLongCSGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:306:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:311:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:308:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_cs_gpu.cpp:308:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleCutGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:353:34: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:351:35: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv*pidotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:349:29: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:349:41: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr;
BUILDSTDERR:                                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:353:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv*pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_cut_gpu.cpp:358:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutDipoleLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:70: warning: 'd2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:62: warning: 'd1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:54: warning: 'd0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:47: warning: 'b2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:39: warning: 'b1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:409:31: warning: 'b0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = qqrd2e*(b0*g0 + b1*g1 + b2*g2);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:70: warning: 'g2' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:62: warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:412:54: warning: 'g0' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += (1-factor_coul) * qqrd2e * (d0*g0 + d1*g1 + d2*g2);
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_dipole_long_gpu.cpp:417:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairBornCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:282:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:287:32: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                + d[itype][jtype]*r6inv*r2inv - offset[itype][jtype];
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_born_coul_long_gpu.cpp:286:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairBuckCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:274:35: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              ecoul = prefactor*erfc;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:275:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:279:59: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_buck_coul_long_gpu.cpp:279:36: warning: 'rexp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = a[itype][jtype]*rexp - c[itype][jtype]*r6inv -
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:281:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:286:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:283:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_coul_long_gpu.cpp:283:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCharmmCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:317:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:322:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:326:70: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:319:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:319:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_charmm_coul_long_gpu.cpp:326:44: warning: 'jtype' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]);
BUILDSTDERR:                                             ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:305:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:310:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:314:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:307:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_long_gpu.cpp:307:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp: In member function 'void LAMMPS_NS::PairLJCutCoulMSMGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:283:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:278:39: warning: 'egamma' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*egamma;
BUILDSTDERR:                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:287:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:280:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:293:70: warning: 'ecoul' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:          if (evflag) ev_tally_full(i,evdwl,ecoul,fpair,delx,dely,delz);
BUILDSTDERR:                                                                       ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:293:70: warning: 'evdwl' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_cut_coul_msm_gpu.cpp:280:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_sw_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMFSGPU::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:376:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:377:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:378:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:379:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:404:29: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:      fgets(line,MAXLINE,fptr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:426:31: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
BUILDSTDERR:        fgets(line,MAXLINE,fptr);
BUILDSTDERR:                                ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp: In member function 'virtual void LAMMPS_NS::PairEAMAlloyGPU::read_file(char*)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_alloy_gpu.cpp:433:55: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:      if (me == 0) grab(fptr,file->nr,&file->rhor[i][1]);
BUILDSTDERR:                                                        ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_eam_fs_gpu.cpp:442:59: warning: 'fptr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:        if (me == 0) grab(fptr,file->nr,&file->z2r[i][j][1]);
BUILDSTDERR:                                                            ^
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_mod_gpu.cpp
[ 99%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_tersoff_zbl_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_vashishta_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sdk_coul_long_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp
[100%] Building CXX object CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -Dlammps_EXPORTS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIC   -o CMakeFiles/lammps.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp: In member function 'void LAMMPS_NS::PairLJExpandCoulLongGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:311:37: warning: 'erfc' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul = prefactor*erfc;
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:316:62: warning: 'prefactor' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              if (factor_coul < 1.0) ecoul -= (1.0-factor_coul)*prefactor;
BUILDSTDERR:                                                               ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:320:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:313:48: warning: 'fraction' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                                 ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_expand_coul_long_gpu.cpp:313:36: warning: 'itable' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                table = etable[itable] + fraction*detable[itable];
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp: In member function 'void LAMMPS_NS::PairLJSFDipoleSFGPU::cpu_compute(int, int, int, int, int*, int*, int**)':
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:388:25: warning: 'rcutlj6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rcutlj6inv*(-7*lj3[itype][jtype]*rcutlj6inv+4*lj4[itype][jtype]);
BUILDSTDERR:                          ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:387:18: warning: 'rcutlj2inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                rsq*rcutlj2inv +
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:35: warning: 'qpfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:378:36: warning: 'pqfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv * pqfac * pidotr;
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:29: warning: 'bfac' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:43: warning: 'pjdotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                                            ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:378:44: warning: 'pidotr' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += -q[j]*r3inv * pqfac * pidotr;
BUILDSTDERR:                                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:37: warning: 'pdotp' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:376:49: warning: 'r5inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += bfac * (r3inv*pdotp - 3.0*r5inv*pidotr*pjdotr);
BUILDSTDERR:                                                  ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:380:28: warning: 'r3inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:                ecoul += qtmp*r3inv * qpfac * pjdotr;
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU/pair_lj_sf_dipole_sf_gpu.cpp:385:26: warning: 'r6inv' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:              evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) +
BUILDSTDERR:                           ^
[100%] Linking CXX shared library liblammps_openmpi.so
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/lammps.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -shared -Wl,-soname,liblammps_openmpi.so.0 -o liblammps_openmpi.so.0 @CMakeFiles/lammps.dir/objects1.rsp libmpi_stubs.a -lfftw3 -lpython3.6m -ljpeg -lpng -lz -lvoro++ -lkim-api libcsnompi.a -lm libpoems.a libatc.a libcolvars.a libh5md.a libgpu.a -lopenblas -lhdf5 -lsz -lz -ldl -lm -lOpenCL 
/usr/bin/cmake3 -E cmake_symlink_library liblammps_openmpi.so.0 liblammps_openmpi.so.0 liblammps_openmpi.so
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[100%] Built target lammps
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/lmp.dir/DependInfo.cmake --color=
Scanning dependencies of target lmp
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[100%] Building CXX object CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o
/usr/bin/c++  -DFFT_FFTW -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLMP_PYTHON -DLMP_USER_OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/STUBS -I/usr/include/python3.6m -I/usr/include/kim-api -I/usr/lib64/kim-api/mod -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/message/cslib/src -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/ASPHERE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/BODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CLASS2 -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/COLLOID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/CORESHELL -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/DIPOLE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GRANULAR -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KSPACE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MANYBODY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MESSAGE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/MOLECULE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PERI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/POEMS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/QEQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/REPLICA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/RIGID -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SHOCK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SPIN -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SNAP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/SRD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/KIM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/PYTHON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/VORONOI -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-ATC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-BOCS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGDNA -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MESO -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-CGSDK -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-COLVARS -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DIFFRACTION -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-DRUDE -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-EFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-FEP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-H5MD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MANIFOLD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MEAMC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MGPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MISC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-MOFFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PHONON -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-PTM -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-QTB -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-REAXC -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SDPD -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SMTBQ -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-SPH -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-TALLY -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-UEF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-YAFF -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/USER-OMP -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/OPT -I/builddir/build/BUILD/lammps-stable_5Jun2019/src/GPU -I/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/poems -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/atc -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/colvars -I/builddir/build/BUILD/lammps-stable_5Jun2019/lib/h5md/include  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp -fPIE   -o CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o -c /builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp
[100%] Linking CXX executable lmp_openmpi
/usr/bin/cmake3 -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1
/usr/bin/c++  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -fopenmp  -Wl,-z,relro  -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -rdynamic CMakeFiles/lmp.dir/builddir/build/BUILD/lammps-stable_5Jun2019/src/main.cpp.o  -o lmp_openmpi -Wl,-rpath,/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi: liblammps_openmpi.so.0 libmpi_stubs.a -lfftw3 -lpython3.6m -ljpeg -lpng -lvoro++ -lkim-api libcsnompi.a -lm libpoems.a libatc.a -lopenblas libcolvars.a libh5md.a -lhdf5 -lsz -lz -ldl -lm libgpu.a -lOpenCL 
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[100%] Built target lmp
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles 0
+ popd
~/build/BUILD/lammps-stable_5Jun2019
+ test -n openmpi
+ module unload mpi/openmpi-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh unload mpi/openmpi-aarch64
+ eval MANPATH=/usr/share/man:/usr/local/share/man ';export' 'MANPATH;PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;unset' 'LD_LIBRARY_PATH;unset' 'LOADEDMODULES;unset' 'MPI_BIN;unset' 'MPI_COMPILER;unset' 'MPI_FORTRAN_MOD_DIR;unset' 'MPI_HOME;unset' 'MPI_INCLUDE;unset' 'MPI_LIB;unset' 'MPI_MAN;unset' 'MPI_PYTHON_SITEARCH;unset' 'MPI_SUFFIX;unset' 'MPI_SYSCONFIG;unset' 'PYTHONPATH;unset' '_LMFILES_;'
BUILDSTDERR: ++ MANPATH=/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ unset LD_LIBRARY_PATH
BUILDSTDERR: ++ unset LOADEDMODULES
BUILDSTDERR: ++ unset MPI_BIN
BUILDSTDERR: ++ unset MPI_COMPILER
BUILDSTDERR: ++ unset MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ unset MPI_HOME
BUILDSTDERR: ++ unset MPI_INCLUDE
BUILDSTDERR: ++ unset MPI_LIB
BUILDSTDERR: ++ unset MPI_MAN
BUILDSTDERR: ++ unset MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ unset MPI_SUFFIX
BUILDSTDERR: ++ unset MPI_SYSCONFIG
BUILDSTDERR: ++ unset PYTHONPATH
BUILDSTDERR: ++ unset _LMFILES_
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.58kLHN
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64
+ cd lammps-stable_5Jun2019
+ . /etc/profile.d/modules.sh
BUILDSTDERR: ++++ /bin/ps -p 22925 -ocomm=
BUILDSTDERR: +++ /bin/basename sh
BUILDSTDERR: ++ shell=sh
BUILDSTDERR: ++ '[' -f /usr/share/Modules/init/sh ']'
BUILDSTDERR: ++ . /usr/share/Modules/init/sh
BUILDSTDERR: +++ MODULESHOME=/usr/share/Modules
BUILDSTDERR: +++ export MODULESHOME
BUILDSTDERR: +++ '[' '' = '' ']'
BUILDSTDERR: +++ LOADEDMODULES=
BUILDSTDERR: +++ export LOADEDMODULES
BUILDSTDERR: +++ '[' /usr/share/Modules/modulefiles:/etc/modulefiles = '' ']'
+ for mpi in ''\'''\''' mpich openmpi
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64 -C serial
make: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/cmake3 -S/builddir/build/BUILD/lammps-stable_5Jun2019/cmake -B/builddir/build/BUILD/lammps-stable_5Jun2019/serial --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/msi2lmp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/msi2lmp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  1%] Built target msi2lmp
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/mpi_stubs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/mpi_stubs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  1%] Built target mpi_stubs
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/poems.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/poems.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  4%] Built target poems
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/colvars.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/colvars.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[  6%] Built target colvars
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/atc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/atc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 11%] Built target atc
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/cslib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/cslib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 11%] Built target cslib
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/h5md.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/h5md.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 11%] Built target h5md
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/cmake3 -DCMAKE_CURRENT_SOURCE_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/serial/styles" -P /builddir/build/BUILD/lammps-stable_5Jun2019/cmake/Modules/generate_lmpgitversion.cmake
-- Generating lmpgitversion.h...
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 11%] Built target gitversion
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/gpu.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/gpu.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[ 19%] Built target gpu
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/lammps.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/lammps.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[100%] Built target lammps
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/lmp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/lmp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[100%] Built target lmp
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/serial && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[2]: Nothing to be done for `CMakeFiles/ocl_get_devices.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
[100%] Built target ocl_get_devices
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/serial/CMakeFiles 0
/usr/bin/make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
make[1]: Nothing to be done for `preinstall'.
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
Install the project...
/usr/bin/cmake3 -P cmake_install.cmake
-- Install configuration: ""
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/liblammps.so.0
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/liblammps.so
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/include/lammps/library.h
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/pkgconfig/liblammps.pc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/cmake/Modules/FindLAMMPS.cmake
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/bin/lmp
-- Set runtime path of "/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/bin/lmp" to ""
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/man1/lmp.1
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/bin/msi2lmp
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/man1/msi2lmp.1
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.gw.zbl
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/FeP_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/lib.comb3
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.Al2O3
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/C.lcbop
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Au_u3.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaAs.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN_sw.poly
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1989.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff.mod
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1990.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1994.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTe.sw
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.KC
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/library.meam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si_2.meam.spline
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.b.meam.sw.spline
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.potin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.airebo-m
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTeSe.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/NiAlH_jea.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.cho
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.comb
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/charmm36.cmap
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_zhou.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.ci-reax.CH
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.lg
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/charmm22.cmap
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/WL.meam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_zhou.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.Lebedeva
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snap
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1994.vashishta
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ti.meam.spline
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH_taper.KC
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/FeCr.cdeam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.vashishta
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.gw
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_zhou.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuTa.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snapparam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff.modc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/NiAlH_jea.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlFe_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNCH.ILP
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.meam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.README
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuZr_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_u6.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ge.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.tersoff.zbl
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiCGe.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.KC-full
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_smf7.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snapcoeff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.README
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.README
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.Al
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.potin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlO.streitz
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.rebo
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.ZnOH
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_prb.agni
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_u3.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1990.vashishta
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/InP.vashishta
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ag_u3.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/README
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlO.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlSiMgCuFe.meam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CCu_v2.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.KC
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.sw
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.eim
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mg_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni.adp
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Fe_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapcoeff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.edip
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdZnTe_v1.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.mattsson
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_He_JW2013.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.AuO
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN.sw
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Zr_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN_tersoff.poly
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_jnp.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/He_He_JW2013.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTe.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.AB
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Pt_u3.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snap
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.README
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.edip
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuTa_eam.poly
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni.meam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BN.extep
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_mishin1.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/C.drip
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snapparam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/MOH.nb3b.harmonic
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu.meam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snap
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.rdx
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdZnTe_v2.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.parmin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ti.meam.sw.spline
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/TiO.meam.spline
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.parmin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuNi.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_jpc.agni
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.comb3
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuH.bop.table
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.airebo
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.parmin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.parmin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNCH-old.ILP
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.budzien
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.V_O_C_H
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.TiO2
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.potin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.potin
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CoAl.eam.alloy
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si_1.meam.spline
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/README.reax
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.adp
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNC.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.FC
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN.tersoff
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/VFe_mm.eam.fs
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni_u3.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1997.vashishta
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTeZnSeHgS0.sw
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni_smf7.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Pd_u3.eam
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/oplsaa.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cvff.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff.rlb
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cvff_aug.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/README
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/compass_published.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/clayff.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cff91.frc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff_templates.dat
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/etc/profile.d/lammps.sh
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/etc/profile.d/lammps.csh
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib/python3.6/site-packages/lammps.py
make: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
+ for mpi in ''\'''\''' mpich openmpi
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64 -C mpich
make: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/cmake3 -S/builddir/build/BUILD/lammps-stable_5Jun2019/cmake -B/builddir/build/BUILD/lammps-stable_5Jun2019/mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/msi2lmp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/msi2lmp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  1%] Built target msi2lmp
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/mpi_stubs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/mpi_stubs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  1%] Built target mpi_stubs
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/poems.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/poems.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  4%] Built target poems
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/colvars.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/colvars.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[  6%] Built target colvars
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/atc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/atc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 11%] Built target atc
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/cslib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/cslib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 11%] Built target cslib
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/h5md.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/h5md.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 11%] Built target h5md
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/cmake3 -DCMAKE_CURRENT_SOURCE_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/mpich/styles" -P /builddir/build/BUILD/lammps-stable_5Jun2019/cmake/Modules/generate_lmpgitversion.cmake
-- Generating lmpgitversion.h...
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 11%] Built target gitversion
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/gpu.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/gpu.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[ 19%] Built target gpu
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/lammps.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/lammps.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[100%] Built target lammps
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/lmp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/lmp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[100%] Built target lmp
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/mpich && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[2]: Nothing to be done for `CMakeFiles/ocl_get_devices.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
[100%] Built target ocl_get_devices
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/mpich/CMakeFiles 0
/usr/bin/make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
make[1]: Nothing to be done for `preinstall'.
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
Install the project...
/usr/bin/cmake3 -P cmake_install.cmake
-- Install configuration: ""
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/lib/liblammps_mpich.so.0
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/lib/liblammps_mpich.so
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/include/lammps/library.h
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/lib/pkgconfig/liblammps_mpich.pc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/cmake/Modules/FindLAMMPS_mpich.cmake
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/bin/lmp_mpich
-- Set runtime path of "/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/bin/lmp_mpich" to ""
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/mpich/man1/lmp_mpich.1
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/bin/msi2lmp
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/mpich/man1/msi2lmp.1
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.gw.zbl
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/FeP_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/lib.comb3
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.Al2O3
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/C.lcbop
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Au_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaAs.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN_sw.poly
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1989.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff.mod
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1990.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1994.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTe.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.KC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/library.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si_2.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.b.meam.sw.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.airebo-m
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTeSe.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/NiAlH_jea.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.cho
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.comb
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/charmm36.cmap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_zhou.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.ci-reax.CH
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.lg
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/charmm22.cmap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/WL.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_zhou.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.Lebedeva
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1994.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ti.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH_taper.KC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/FeCr.cdeam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.gw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_zhou.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuTa.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snapparam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff.modc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/NiAlH_jea.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlFe_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNCH.ILP
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuZr_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_u6.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ge.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.tersoff.zbl
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiCGe.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.KC-full
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_smf7.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snapcoeff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.Al
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlO.streitz
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.rebo
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.ZnOH
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_prb.agni
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1990.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/InP.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ag_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlO.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlSiMgCuFe.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CCu_v2.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.KC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.eim
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mg_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni.adp
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Fe_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapcoeff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.edip
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdZnTe_v1.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.mattsson
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_He_JW2013.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.AuO
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Zr_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN_tersoff.poly
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_jnp.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/He_He_JW2013.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTe.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.AB
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Pt_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.edip
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuTa_eam.poly
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BN.extep
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_mishin1.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/C.drip
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snapparam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/MOH.nb3b.harmonic
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.rdx
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdZnTe_v2.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ti.meam.sw.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/TiO.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuNi.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_jpc.agni
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.comb3
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuH.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.airebo
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNCH-old.ILP
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.budzien
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.V_O_C_H
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.TiO2
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CoAl.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si_1.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/README.reax
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.adp
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNC.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.FC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/VFe_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1997.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTeZnSeHgS0.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni_smf7.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Pd_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/oplsaa.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cvff.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff.rlb
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cvff_aug.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/compass_published.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/clayff.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cff91.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff_templates.dat
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/etc/profile.d/lammps.sh
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/etc/profile.d/lammps.csh
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib/python3.6/site-packages/lammps.py
make: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
+ for mpi in ''\'''\''' mpich openmpi
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64 -C openmpi
make: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/cmake3 -S/builddir/build/BUILD/lammps-stable_5Jun2019/cmake -B/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/msi2lmp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/msi2lmp.dir/build.make CMakeFiles/msi2lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/msi2lmp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  1%] Built target msi2lmp
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/mpi_stubs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/mpi_stubs.dir/build.make CMakeFiles/mpi_stubs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/mpi_stubs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  1%] Built target mpi_stubs
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/poems.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/poems.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  4%] Built target poems
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/colvars.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/colvars.dir/build.make CMakeFiles/colvars.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/colvars.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[  6%] Built target colvars
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/atc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/atc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 11%] Built target atc
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/cslib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/cslib.dir/build.make CMakeFiles/cslib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/cslib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 11%] Built target cslib
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/h5md.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/h5md.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 11%] Built target h5md
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/gitversion.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/cmake3 -DCMAKE_CURRENT_SOURCE_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/cmake" -DGIT_EXECUTABLE="GIT_EXECUTABLE-NOTFOUND" -DGIT_FOUND="FALSE" -DLAMMPS_STYLE_HEADERS_DIR="/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/styles" -P /builddir/build/BUILD/lammps-stable_5Jun2019/cmake/Modules/generate_lmpgitversion.cmake
-- Generating lmpgitversion.h...
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 11%] Built target gitversion
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/gpu.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/gpu.dir/build.make CMakeFiles/gpu.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/gpu.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[ 19%] Built target gpu
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/lammps.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/lammps.dir/build.make CMakeFiles/lammps.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/lammps.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[100%] Built target lammps
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/lmp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/lmp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[100%] Built target lmp
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
cd /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi && /usr/bin/cmake3 -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/cmake /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles/ocl_get_devices.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/make -f CMakeFiles/ocl_get_devices.dir/build.make CMakeFiles/ocl_get_devices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[2]: Nothing to be done for `CMakeFiles/ocl_get_devices.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
[100%] Built target ocl_get_devices
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
/usr/bin/cmake3 -E cmake_progress_start /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi/CMakeFiles 0
/usr/bin/make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
make[1]: Nothing to be done for `preinstall'.
make[1]: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
Install the project...
/usr/bin/cmake3 -P cmake_install.cmake
-- Install configuration: ""
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/lib/liblammps_openmpi.so.0
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/lib/liblammps_openmpi.so
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/include/lammps/library.h
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/lib/pkgconfig/liblammps_openmpi.pc
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/cmake/Modules/FindLAMMPS_openmpi.cmake
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/bin/lmp_openmpi
-- Set runtime path of "/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/bin/lmp_openmpi" to ""
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/openmpi-aarch64/man1/lmp_openmpi.1
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/bin/msi2lmp
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/openmpi-aarch64/man1/msi2lmp.1
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.gw.zbl
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/FeP_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/lib.comb3
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.Al2O3
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/C.lcbop
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Au_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaAs.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2_He_JW2013.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN_sw.poly
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1989.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapparam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff.mod
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1990.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_1994.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.Fe_O_C_H
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTe.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.KC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/library.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si_2.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC_Erhart-Albe.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.b.meam.sw.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snapcoeff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.airebo-m
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTeSe.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/NiAlH_jea.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.cho
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.comb
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/charmm36.cmap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_zhou.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.ci-reax.CH
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.lg
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/charmm22.cmap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/WL.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_zhou.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.Lebedeva
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1994.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ti.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH_taper.KC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/FeCr.cdeam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.gw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_zhou.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuTa.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snapparam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.tersoff.modc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/NiAlH_jea.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlFe_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNCH.ILP
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuZr_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_u6.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ge.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.tersoff.zbl
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiCGe.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CC.KC-full
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_smf7.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snapcoeff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.Al
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlO.streitz
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.rebo
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.ZnOH
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_prb.agni
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1990.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/InP.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ag_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlO.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlSiMgCuFe.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CCu_v2.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.KC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.eim
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mg_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni.adp
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Fe_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo_Chen_PRM2017.snapcoeff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si.edip
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdZnTe_v1.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.mattsson
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_He_JW2013.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.AuO
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Zr_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN_tersoff.poly
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ci-reaxFF_ZBL.dat
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_jnp.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/He_He_JW2013.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTe.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.AB
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Pt_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiC.edip
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuTa_eam.poly
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BN.extep
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu_mishin1.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/C.drip
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta06A.snapparam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/MOH.nb3b.harmonic
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Cu.meam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/W_2940_2017_2.snap
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.rdx
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdZnTe_v2.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/V6.1.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ti.meam.sw.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/TiO.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuNi.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Al_jpc.agni
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.comb3
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CuH.bop.table
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CH.airebo
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Mo5.2.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.parmin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNCH-old.ILP
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.budzien
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.V_O_C_H
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.smtbq.TiO2
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta6.8x.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ta4.mgpt.potin
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CoAl.eam.alloy
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Si_1.meam.spline
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/README.reax
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/AlCu.adp
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/BNC.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/ffield.reax.FC
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/GaN.tersoff
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/VFe_mm.eam.fs
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/SiO.1997.vashishta
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/CdTeZnSeHgS0.sw
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Ni_smf7.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/potentials/Pd_u3.eam
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/oplsaa.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cvff.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff.rlb
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cvff_aug.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/README
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/compass_published.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/clayff.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/cff91.frc
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/lammps/frc_files/pcff_templates.dat
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/etc/profile.d/lammps.sh
-- Installing: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/etc/profile.d/lammps.csh
-- Up-to-date: /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib/python3.6/site-packages/lammps.py
make: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
+ rm -v /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/bin/msi2lmp /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/bin/msi2lmp /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/mpich/man1/msi2lmp.1 /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/openmpi-aarch64/man1/msi2lmp.1
removed '/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/bin/msi2lmp'
removed '/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/bin/msi2lmp'
removed '/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/mpich/man1/msi2lmp.1'
removed '/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/man/openmpi-aarch64/man1/msi2lmp.1'
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 /builddir/build/BUILD/lammps-stable_5Jun2019
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/lib/liblammps_openmpi.so.0
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/openmpi/bin/lmp_openmpi
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/liblammps.so.0
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/lib/liblammps_mpich.so.0
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib64/mpich/bin/lmp_mpich
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/bin/lmp
extracting debug info from /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/bin/msi2lmp
/usr/lib/rpm/sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
symlinked /usr/lib/debug/usr/lib64/liblammps.so.0.debug to /usr/lib/debug/usr/lib64/liblammps.so.debug
symlinked /usr/lib/debug/usr/lib64/openmpi/lib/liblammps_openmpi.so.0.debug to /usr/lib/debug/usr/lib64/openmpi/lib/liblammps_openmpi.so.debug
symlinked /usr/lib/debug/usr/lib64/mpich/lib/liblammps_mpich.so.0.debug to /usr/lib/debug/usr/lib64/mpich/lib/liblammps_mpich.so.debug
BUILDSTDERR: 69964 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
Bytecompiling .py files below /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/lib/python3.6 using /usr/bin/python3.6
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.yWL1dr
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ . /etc/profile.d/modules.sh
BUILDSTDERR: ++++ /bin/ps -p 23489 -ocomm=
BUILDSTDERR: +++ /bin/basename sh
BUILDSTDERR: ++ shell=sh
BUILDSTDERR: ++ '[' -f /usr/share/Modules/init/sh ']'
BUILDSTDERR: ++ . /usr/share/Modules/init/sh
BUILDSTDERR: +++ MODULESHOME=/usr/share/Modules
BUILDSTDERR: +++ export MODULESHOME
BUILDSTDERR: +++ '[' '' = '' ']'
BUILDSTDERR: +++ LOADEDMODULES=
BUILDSTDERR: +++ export LOADEDMODULES
BUILDSTDERR: +++ '[' /usr/share/Modules/modulefiles:/etc/modulefiles = '' ']'
+ for mpi in ''\'''\''' mpich openmpi
+ test -n ''
+ make -C serial -j4 test CTEST_OUTPUT_ON_FAILURE=1
make: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
Running tests...
/usr/bin/ctest3 --force-new-ctest-process 
Test project /builddir/build/BUILD/lammps-stable_5Jun2019/serial
      Start  1: test_core_balance_001_serial
 1/54 Test  #1: test_core_balance_001_serial ..........   Passed    0.26 sec
      Start  2: test_core_balance_002_serial
 2/54 Test  #2: test_core_balance_002_serial ..........   Passed    0.26 sec
      Start  3: test_core_balance_003_serial
 3/54 Test  #3: test_core_balance_003_serial ..........   Passed    0.26 sec
      Start  4: test_core_balance_004_serial
 4/54 Test  #4: test_core_balance_004_serial ..........   Passed    0.26 sec
      Start  5: test_core_balance_005_serial
 5/54 Test  #5: test_core_balance_005_serial ..........   Passed    0.25 sec
      Start  6: test_core_balance_006_serial
 6/54 Test  #6: test_core_balance_006_serial ..........   Passed    0.26 sec
      Start  7: test_core_comm_style_001_serial
 7/54 Test  #7: test_core_comm_style_001_serial .......   Passed    0.26 sec
      Start  8: test_core_comm_style_002_serial
 8/54 Test  #8: test_core_comm_style_002_serial .......   Passed    0.26 sec
      Start  9: test_core_displace_atoms_000_serial
 9/54 Test  #9: test_core_displace_atoms_000_serial ...   Passed    1.60 sec
      Start 10: test_core_displace_atoms_001_serial
10/54 Test #10: test_core_displace_atoms_001_serial ...   Passed    1.59 sec
      Start 11: test_core_displace_atoms_002_serial
11/54 Test #11: test_core_displace_atoms_002_serial ...   Passed    1.60 sec
      Start 12: test_core_empty_000_serial
12/54 Test #12: test_core_empty_000_serial ............   Passed    0.03 sec
      Start 13: test_core_empty_001_serial
13/54 Test #13: test_core_empty_001_serial ............   Passed    0.03 sec
      Start 14: test_core_empty_002_serial
14/54 Test #14: test_core_empty_002_serial ............   Passed    0.03 sec
      Start 15: test_core_min_001_serial
15/54 Test #15: test_core_min_001_serial ..............   Passed    2.17 sec
      Start 16: test_core_min_002_serial
16/54 Test #16: test_core_min_002_serial ..............   Passed   10.72 sec
      Start 17: test_core_min_003_serial
17/54 Test #17: test_core_min_003_serial ..............   Passed    2.27 sec
      Start 18: test_core_min_004_serial
18/54 Test #18: test_core_min_004_serial ..............   Passed    1.17 sec
      Start 19: test_core_min_005_serial
19/54 Test #19: test_core_min_005_serial ..............   Passed    1.19 sec
      Start 20: test_core_min_006_serial
20/54 Test #20: test_core_min_006_serial ..............   Passed    1.16 sec
      Start 21: test_core_min_007_serial
21/54 Test #21: test_core_min_007_serial ..............   Passed    2.27 sec
      Start 22: test_core_min_008_serial
22/54 Test #22: test_core_min_008_serial ..............   Passed    1.17 sec
      Start 23: test_core_min_009_serial
23/54 Test #23: test_core_min_009_serial ..............   Passed    2.39 sec
      Start 24: test_core_processors_001_serial
24/54 Test #24: test_core_processors_001_serial .......   Passed    0.26 sec
      Start 25: test_core_processors_002_serial
25/54 Test #25: test_core_processors_002_serial .......   Passed    0.25 sec
      Start 26: test_core_read_data_001_serial
26/54 Test #26: test_core_read_data_001_serial ........   Passed    0.03 sec
      Start 27: test_core_read_data_002_serial
27/54 Test #27: test_core_read_data_002_serial ........   Passed    0.03 sec
      Start 28: test_core_read_data_003_serial
28/54 Test #28: test_core_read_data_003_serial ........   Passed    0.03 sec
      Start 29: test_core_read_data_004_serial
29/54 Test #29: test_core_read_data_004_serial ........   Passed    0.03 sec
      Start 30: test_core_read_data_005_serial
30/54 Test #30: test_core_read_data_005_serial ........   Passed    0.03 sec
      Start 31: test_core_read_data_006_serial
31/54 Test #31: test_core_read_data_006_serial ........   Passed    0.03 sec
      Start 32: test_core_rerun_001_serial
32/54 Test #32: test_core_rerun_001_serial ............   Passed    1.98 sec
      Start 33: test_core_rerun_002_serial
33/54 Test #33: test_core_rerun_002_serial ............   Passed    2.48 sec
      Start 34: test_core_rerun_003_serial
34/54 Test #34: test_core_rerun_003_serial ............   Passed    1.99 sec
      Start 35: test_core_rerun_004_serial
35/54 Test #35: test_core_rerun_004_serial ............   Passed    2.08 sec
      Start 36: test_core_rerun_005_serial
36/54 Test #36: test_core_rerun_005_serial ............   Passed    2.07 sec
      Start 37: test_core_rerun_006_serial
37/54 Test #37: test_core_rerun_006_serial ............   Passed    2.00 sec
      Start 38: test_core_respa_000_serial
38/54 Test #38: test_core_respa_000_serial ............   Passed   12.82 sec
      Start 39: test_core_respa_001_serial
39/54 Test #39: test_core_respa_001_serial ............   Passed   12.80 sec
      Start 40: test_core_respa_002_serial
40/54 Test #40: test_core_respa_002_serial ............   Passed    0.03 sec
      Start 41: test_core_respa_003_serial
41/54 Test #41: test_core_respa_003_serial ............   Passed    0.03 sec
      Start 42: test_core_respa_004_serial
42/54 Test #42: test_core_respa_004_serial ............   Passed    0.03 sec
      Start 43: test_core_respa_005_serial
43/54 Test #43: test_core_respa_005_serial ............   Passed    0.03 sec
      Start 44: test_core_respa_006_serial
44/54 Test #44: test_core_respa_006_serial ............   Passed    0.03 sec
      Start 45: test_core_respa_007_serial
45/54 Test #45: test_core_respa_007_serial ............   Passed    0.03 sec
      Start 46: test_core_respa_008_serial
46/54 Test #46: test_core_respa_008_serial ............   Passed    0.03 sec
      Start 47: test_core_respa_100_serial
47/54 Test #47: test_core_respa_100_serial ............   Passed   13.37 sec
      Start 48: test_core_respa_101_serial
48/54 Test #48: test_core_respa_101_serial ............   Passed   13.42 sec
      Start 49: test_core_respa_102_serial
49/54 Test #49: test_core_respa_102_serial ............   Passed   13.47 sec
      Start 50: test_core_respa_103_serial
50/54 Test #50: test_core_respa_103_serial ............   Passed   10.67 sec
      Start 51: test_core_respa_200_serial
51/54 Test #51: test_core_respa_200_serial ............   Passed    0.52 sec
      Start 52: test_core_respa_201_serial
52/54 Test #52: test_core_respa_201_serial ............   Passed    0.59 sec
      Start 53: test_core_respa_202_serial
53/54 Test #53: test_core_respa_202_serial ............   Passed    0.65 sec
      Start 54: ShowHelp
54/54 Test #54: ShowHelp ..............................   Passed    0.04 sec
100% tests passed, 0 tests failed out of 54
Total Test time (real) = 123.42 sec
make: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/serial'
+ test -n ''
+ for mpi in ''\'''\''' mpich openmpi
+ test -n mpich
+ module load mpi/mpich-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh load mpi/mpich-aarch64
+ eval LD_LIBRARY_PATH=/usr/lib64/mpich/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/mpich-aarch64' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/mpich:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/mpich/bin' ';export' 'MPI_BIN;MPI_COMPILER=mpich-aarch64' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich-aarch64' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/mpich' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/mpich-aarch64' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/mpich/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/mpich' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_mpich' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/mpich-aarch64' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:/usr/lib64/pkgconfig:/usr/share/pkgconfig' ';export' 'PKG_CONFIG_PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/mpich' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/mpich-aarch64' ';export' '_LMFILES_;'
BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
BUILDSTDERR: ++ export LD_LIBRARY_PATH
BUILDSTDERR: ++ LOADEDMODULES=mpi/mpich-aarch64
BUILDSTDERR: ++ export LOADEDMODULES
BUILDSTDERR: ++ MANPATH=/usr/share/man/mpich:/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ MPI_BIN=/usr/lib64/mpich/bin
BUILDSTDERR: ++ export MPI_BIN
BUILDSTDERR: ++ MPI_COMPILER=mpich-aarch64
BUILDSTDERR: ++ export MPI_COMPILER
BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich-aarch64
BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ MPI_HOME=/usr/lib64/mpich
BUILDSTDERR: ++ export MPI_HOME
BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/mpich-aarch64
BUILDSTDERR: ++ export MPI_INCLUDE
BUILDSTDERR: ++ MPI_LIB=/usr/lib64/mpich/lib
BUILDSTDERR: ++ export MPI_LIB
BUILDSTDERR: ++ MPI_MAN=/usr/share/man/mpich
BUILDSTDERR: ++ export MPI_MAN
BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/mpich
BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ MPI_SUFFIX=_mpich
BUILDSTDERR: ++ export MPI_SUFFIX
BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/mpich-aarch64
BUILDSTDERR: ++ export MPI_SYSCONFIG
BUILDSTDERR: ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:/usr/lib64/pkgconfig:/usr/share/pkgconfig
BUILDSTDERR: ++ export PKG_CONFIG_PATH
BUILDSTDERR: ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/mpich
BUILDSTDERR: ++ export PYTHONPATH
BUILDSTDERR: ++ _LMFILES_=/etc/modulefiles/mpi/mpich-aarch64
BUILDSTDERR: ++ export _LMFILES_
+ make -C mpich -j4 test CTEST_OUTPUT_ON_FAILURE=1
make: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
Running tests...
/usr/bin/ctest3 --force-new-ctest-process 
Test project /builddir/build/BUILD/lammps-stable_5Jun2019/mpich
      Start  1: test_core_balance_001_serial
 1/54 Test  #1: test_core_balance_001_serial ..........   Passed    0.26 sec
      Start  2: test_core_balance_002_serial
 2/54 Test  #2: test_core_balance_002_serial ..........   Passed    0.26 sec
      Start  3: test_core_balance_003_serial
 3/54 Test  #3: test_core_balance_003_serial ..........   Passed    0.27 sec
      Start  4: test_core_balance_004_serial
 4/54 Test  #4: test_core_balance_004_serial ..........   Passed    0.28 sec
      Start  5: test_core_balance_005_serial
 5/54 Test  #5: test_core_balance_005_serial ..........   Passed    0.26 sec
      Start  6: test_core_balance_006_serial
 6/54 Test  #6: test_core_balance_006_serial ..........   Passed    0.26 sec
      Start  7: test_core_comm_style_001_serial
 7/54 Test  #7: test_core_comm_style_001_serial .......   Passed    0.25 sec
      Start  8: test_core_comm_style_002_serial
 8/54 Test  #8: test_core_comm_style_002_serial .......   Passed    0.25 sec
      Start  9: test_core_displace_atoms_000_serial
 9/54 Test  #9: test_core_displace_atoms_000_serial ...   Passed    1.59 sec
      Start 10: test_core_displace_atoms_001_serial
10/54 Test #10: test_core_displace_atoms_001_serial ...   Passed    1.60 sec
      Start 11: test_core_displace_atoms_002_serial
11/54 Test #11: test_core_displace_atoms_002_serial ...   Passed    1.60 sec
      Start 12: test_core_empty_000_serial
12/54 Test #12: test_core_empty_000_serial ............   Passed    0.04 sec
      Start 13: test_core_empty_001_serial
13/54 Test #13: test_core_empty_001_serial ............   Passed    0.03 sec
      Start 14: test_core_empty_002_serial
14/54 Test #14: test_core_empty_002_serial ............   Passed    0.03 sec
      Start 15: test_core_min_001_serial
15/54 Test #15: test_core_min_001_serial ..............   Passed    2.17 sec
      Start 16: test_core_min_002_serial
16/54 Test #16: test_core_min_002_serial ..............   Passed   10.72 sec
      Start 17: test_core_min_003_serial
17/54 Test #17: test_core_min_003_serial ..............   Passed    2.28 sec
      Start 18: test_core_min_004_serial
18/54 Test #18: test_core_min_004_serial ..............   Passed    1.17 sec
      Start 19: test_core_min_005_serial
19/54 Test #19: test_core_min_005_serial ..............   Passed    1.19 sec
      Start 20: test_core_min_006_serial
20/54 Test #20: test_core_min_006_serial ..............   Passed    1.17 sec
      Start 21: test_core_min_007_serial
21/54 Test #21: test_core_min_007_serial ..............   Passed    2.28 sec
      Start 22: test_core_min_008_serial
22/54 Test #22: test_core_min_008_serial ..............   Passed    1.16 sec
      Start 23: test_core_min_009_serial
23/54 Test #23: test_core_min_009_serial ..............   Passed    2.35 sec
      Start 24: test_core_processors_001_serial
24/54 Test #24: test_core_processors_001_serial .......   Passed    0.26 sec
      Start 25: test_core_processors_002_serial
25/54 Test #25: test_core_processors_002_serial .......   Passed    0.26 sec
      Start 26: test_core_read_data_001_serial
26/54 Test #26: test_core_read_data_001_serial ........   Passed    0.03 sec
      Start 27: test_core_read_data_002_serial
27/54 Test #27: test_core_read_data_002_serial ........   Passed    0.03 sec
      Start 28: test_core_read_data_003_serial
28/54 Test #28: test_core_read_data_003_serial ........   Passed    0.03 sec
      Start 29: test_core_read_data_004_serial
29/54 Test #29: test_core_read_data_004_serial ........   Passed    0.03 sec
      Start 30: test_core_read_data_005_serial
30/54 Test #30: test_core_read_data_005_serial ........   Passed    0.03 sec
      Start 31: test_core_read_data_006_serial
31/54 Test #31: test_core_read_data_006_serial ........   Passed    0.03 sec
      Start 32: test_core_rerun_001_serial
32/54 Test #32: test_core_rerun_001_serial ............   Passed    1.99 sec
      Start 33: test_core_rerun_002_serial
33/54 Test #33: test_core_rerun_002_serial ............   Passed    2.47 sec
      Start 34: test_core_rerun_003_serial
34/54 Test #34: test_core_rerun_003_serial ............   Passed    1.98 sec
      Start 35: test_core_rerun_004_serial
35/54 Test #35: test_core_rerun_004_serial ............   Passed    2.09 sec
      Start 36: test_core_rerun_005_serial
36/54 Test #36: test_core_rerun_005_serial ............   Passed    2.08 sec
      Start 37: test_core_rerun_006_serial
37/54 Test #37: test_core_rerun_006_serial ............   Passed    2.01 sec
      Start 38: test_core_respa_000_serial
38/54 Test #38: test_core_respa_000_serial ............   Passed   12.90 sec
      Start 39: test_core_respa_001_serial
39/54 Test #39: test_core_respa_001_serial ............   Passed   12.77 sec
      Start 40: test_core_respa_002_serial
40/54 Test #40: test_core_respa_002_serial ............   Passed    0.03 sec
      Start 41: test_core_respa_003_serial
41/54 Test #41: test_core_respa_003_serial ............   Passed    0.03 sec
      Start 42: test_core_respa_004_serial
42/54 Test #42: test_core_respa_004_serial ............   Passed    0.03 sec
      Start 43: test_core_respa_005_serial
43/54 Test #43: test_core_respa_005_serial ............   Passed    0.03 sec
      Start 44: test_core_respa_006_serial
44/54 Test #44: test_core_respa_006_serial ............   Passed    0.03 sec
      Start 45: test_core_respa_007_serial
45/54 Test #45: test_core_respa_007_serial ............   Passed    0.03 sec
      Start 46: test_core_respa_008_serial
46/54 Test #46: test_core_respa_008_serial ............   Passed    0.03 sec
      Start 47: test_core_respa_100_serial
47/54 Test #47: test_core_respa_100_serial ............   Passed   13.35 sec
      Start 48: test_core_respa_101_serial
48/54 Test #48: test_core_respa_101_serial ............   Passed   13.42 sec
      Start 49: test_core_respa_102_serial
49/54 Test #49: test_core_respa_102_serial ............   Passed   13.52 sec
      Start 50: test_core_respa_103_serial
50/54 Test #50: test_core_respa_103_serial ............   Passed   10.70 sec
      Start 51: test_core_respa_200_serial
51/54 Test #51: test_core_respa_200_serial ............   Passed    0.52 sec
      Start 52: test_core_respa_201_serial
52/54 Test #52: test_core_respa_201_serial ............   Passed    0.58 sec
      Start 53: test_core_respa_202_serial
53/54 Test #53: test_core_respa_202_serial ............   Passed    0.66 sec
      Start 54: ShowHelp
54/54 Test #54: ShowHelp ..............................   Passed    0.04 sec
100% tests passed, 0 tests failed out of 54
Total Test time (real) = 123.62 sec
make: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/mpich'
+ test -n mpich
+ module unload mpi/mpich-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh unload mpi/mpich-aarch64
+ eval MANPATH=/usr/share/man:/usr/local/share/man ';export' 'MANPATH;PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;PKG_CONFIG_PATH=/usr/lib64/pkgconfig:/usr/share/pkgconfig' ';export' 'PKG_CONFIG_PATH;unset' 'LD_LIBRARY_PATH;unset' 'LOADEDMODULES;unset' 'MPI_BIN;unset' 'MPI_COMPILER;unset' 'MPI_FORTRAN_MOD_DIR;unset' 'MPI_HOME;unset' 'MPI_INCLUDE;unset' 'MPI_LIB;unset' 'MPI_MAN;unset' 'MPI_PYTHON_SITEARCH;unset' 'MPI_SUFFIX;unset' 'MPI_SYSCONFIG;unset' 'PYTHONPATH;unset' '_LMFILES_;'
BUILDSTDERR: ++ MANPATH=/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PKG_CONFIG_PATH=/usr/lib64/pkgconfig:/usr/share/pkgconfig
BUILDSTDERR: ++ export PKG_CONFIG_PATH
BUILDSTDERR: ++ unset LD_LIBRARY_PATH
BUILDSTDERR: ++ unset LOADEDMODULES
BUILDSTDERR: ++ unset MPI_BIN
BUILDSTDERR: ++ unset MPI_COMPILER
BUILDSTDERR: ++ unset MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ unset MPI_HOME
BUILDSTDERR: ++ unset MPI_INCLUDE
BUILDSTDERR: ++ unset MPI_LIB
BUILDSTDERR: ++ unset MPI_MAN
BUILDSTDERR: ++ unset MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ unset MPI_SUFFIX
BUILDSTDERR: ++ unset MPI_SYSCONFIG
BUILDSTDERR: ++ unset PYTHONPATH
BUILDSTDERR: ++ unset _LMFILES_
+ for mpi in ''\'''\''' mpich openmpi
+ test -n openmpi
+ module load mpi/openmpi-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh load mpi/openmpi-aarch64
+ eval LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ';export' 'LD_LIBRARY_PATH;LOADEDMODULES=mpi/openmpi-aarch64' ';export' 'LOADEDMODULES;MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:/usr/local/share/man' ';export' 'MANPATH;MPI_BIN=/usr/lib64/openmpi/bin' ';export' 'MPI_BIN;MPI_COMPILER=openmpi-aarch64' ';export' 'MPI_COMPILER;MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-aarch64' ';export' 'MPI_FORTRAN_MOD_DIR;MPI_HOME=/usr/lib64/openmpi' ';export' 'MPI_HOME;MPI_INCLUDE=/usr/include/openmpi-aarch64' ';export' 'MPI_INCLUDE;MPI_LIB=/usr/lib64/openmpi/lib' ';export' 'MPI_LIB;MPI_MAN=/usr/share/man/openmpi-aarch64' ';export' 'MPI_MAN;MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'MPI_PYTHON_SITEARCH;MPI_SUFFIX=_openmpi' ';export' 'MPI_SUFFIX;MPI_SYSCONFIG=/etc/openmpi-aarch64' ';export' 'MPI_SYSCONFIG;PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi' ';export' 'PYTHONPATH;_LMFILES_=/etc/modulefiles/mpi/openmpi-aarch64' ';export' '_LMFILES_;'
BUILDSTDERR: ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export LD_LIBRARY_PATH
BUILDSTDERR: ++ LOADEDMODULES=mpi/openmpi-aarch64
BUILDSTDERR: ++ export LOADEDMODULES
BUILDSTDERR: ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ MPI_BIN=/usr/lib64/openmpi/bin
BUILDSTDERR: ++ export MPI_BIN
BUILDSTDERR: ++ MPI_COMPILER=openmpi-aarch64
BUILDSTDERR: ++ export MPI_COMPILER
BUILDSTDERR: ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi-aarch64
BUILDSTDERR: ++ export MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ MPI_HOME=/usr/lib64/openmpi
BUILDSTDERR: ++ export MPI_HOME
BUILDSTDERR: ++ MPI_INCLUDE=/usr/include/openmpi-aarch64
BUILDSTDERR: ++ export MPI_INCLUDE
BUILDSTDERR: ++ MPI_LIB=/usr/lib64/openmpi/lib
BUILDSTDERR: ++ export MPI_LIB
BUILDSTDERR: ++ MPI_MAN=/usr/share/man/openmpi-aarch64
BUILDSTDERR: ++ export MPI_MAN
BUILDSTDERR: ++ MPI_PYTHON_SITEARCH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ MPI_SUFFIX=_openmpi
BUILDSTDERR: ++ export MPI_SUFFIX
BUILDSTDERR: ++ MPI_SYSCONFIG=/etc/openmpi-aarch64
BUILDSTDERR: ++ export MPI_SYSCONFIG
BUILDSTDERR: ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ PYTHONPATH=/usr/lib64/python2.7/site-packages/openmpi
BUILDSTDERR: ++ export PYTHONPATH
BUILDSTDERR: ++ _LMFILES_=/etc/modulefiles/mpi/openmpi-aarch64
BUILDSTDERR: ++ export _LMFILES_
+ make -C openmpi -j4 test CTEST_OUTPUT_ON_FAILURE=1
make: Entering directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
Running tests...
/usr/bin/ctest3 --force-new-ctest-process 
Test project /builddir/build/BUILD/lammps-stable_5Jun2019/openmpi
      Start  1: test_core_balance_001_serial
 1/54 Test  #1: test_core_balance_001_serial ..........   Passed    0.26 sec
      Start  2: test_core_balance_002_serial
 2/54 Test  #2: test_core_balance_002_serial ..........   Passed    0.26 sec
      Start  3: test_core_balance_003_serial
 3/54 Test  #3: test_core_balance_003_serial ..........   Passed    0.26 sec
      Start  4: test_core_balance_004_serial
 4/54 Test  #4: test_core_balance_004_serial ..........   Passed    0.26 sec
      Start  5: test_core_balance_005_serial
 5/54 Test  #5: test_core_balance_005_serial ..........   Passed    0.26 sec
      Start  6: test_core_balance_006_serial
 6/54 Test  #6: test_core_balance_006_serial ..........   Passed    0.26 sec
      Start  7: test_core_comm_style_001_serial
 7/54 Test  #7: test_core_comm_style_001_serial .......   Passed    0.26 sec
      Start  8: test_core_comm_style_002_serial
 8/54 Test  #8: test_core_comm_style_002_serial .......   Passed    0.26 sec
      Start  9: test_core_displace_atoms_000_serial
 9/54 Test  #9: test_core_displace_atoms_000_serial ...   Passed    1.60 sec
      Start 10: test_core_displace_atoms_001_serial
10/54 Test #10: test_core_displace_atoms_001_serial ...   Passed    1.60 sec
      Start 11: test_core_displace_atoms_002_serial
11/54 Test #11: test_core_displace_atoms_002_serial ...   Passed    1.60 sec
      Start 12: test_core_empty_000_serial
12/54 Test #12: test_core_empty_000_serial ............   Passed    0.03 sec
      Start 13: test_core_empty_001_serial
13/54 Test #13: test_core_empty_001_serial ............   Passed    0.03 sec
      Start 14: test_core_empty_002_serial
14/54 Test #14: test_core_empty_002_serial ............   Passed    0.03 sec
      Start 15: test_core_min_001_serial
15/54 Test #15: test_core_min_001_serial ..............   Passed    2.16 sec
      Start 16: test_core_min_002_serial
16/54 Test #16: test_core_min_002_serial ..............   Passed   10.76 sec
      Start 17: test_core_min_003_serial
17/54 Test #17: test_core_min_003_serial ..............   Passed    2.26 sec
      Start 18: test_core_min_004_serial
18/54 Test #18: test_core_min_004_serial ..............   Passed    1.17 sec
      Start 19: test_core_min_005_serial
19/54 Test #19: test_core_min_005_serial ..............   Passed    1.18 sec
      Start 20: test_core_min_006_serial
20/54 Test #20: test_core_min_006_serial ..............   Passed    1.16 sec
      Start 21: test_core_min_007_serial
21/54 Test #21: test_core_min_007_serial ..............   Passed    2.27 sec
      Start 22: test_core_min_008_serial
22/54 Test #22: test_core_min_008_serial ..............   Passed    1.16 sec
      Start 23: test_core_min_009_serial
23/54 Test #23: test_core_min_009_serial ..............   Passed    2.36 sec
      Start 24: test_core_processors_001_serial
24/54 Test #24: test_core_processors_001_serial .......   Passed    0.26 sec
      Start 25: test_core_processors_002_serial
25/54 Test #25: test_core_processors_002_serial .......   Passed    0.26 sec
      Start 26: test_core_read_data_001_serial
26/54 Test #26: test_core_read_data_001_serial ........   Passed    0.03 sec
      Start 27: test_core_read_data_002_serial
27/54 Test #27: test_core_read_data_002_serial ........   Passed    0.03 sec
      Start 28: test_core_read_data_003_serial
28/54 Test #28: test_core_read_data_003_serial ........   Passed    0.03 sec
      Start 29: test_core_read_data_004_serial
29/54 Test #29: test_core_read_data_004_serial ........   Passed    0.03 sec
      Start 30: test_core_read_data_005_serial
30/54 Test #30: test_core_read_data_005_serial ........   Passed    0.03 sec
      Start 31: test_core_read_data_006_serial
31/54 Test #31: test_core_read_data_006_serial ........   Passed    0.03 sec
      Start 32: test_core_rerun_001_serial
32/54 Test #32: test_core_rerun_001_serial ............   Passed    1.99 sec
      Start 33: test_core_rerun_002_serial
33/54 Test #33: test_core_rerun_002_serial ............   Passed    2.48 sec
      Start 34: test_core_rerun_003_serial
34/54 Test #34: test_core_rerun_003_serial ............   Passed    1.99 sec
      Start 35: test_core_rerun_004_serial
35/54 Test #35: test_core_rerun_004_serial ............   Passed    2.07 sec
      Start 36: test_core_rerun_005_serial
36/54 Test #36: test_core_rerun_005_serial ............   Passed    2.08 sec
      Start 37: test_core_rerun_006_serial
37/54 Test #37: test_core_rerun_006_serial ............   Passed    2.00 sec
      Start 38: test_core_respa_000_serial
38/54 Test #38: test_core_respa_000_serial ............   Passed   12.78 sec
      Start 39: test_core_respa_001_serial
39/54 Test #39: test_core_respa_001_serial ............   Passed   12.83 sec
      Start 40: test_core_respa_002_serial
40/54 Test #40: test_core_respa_002_serial ............   Passed    0.03 sec
      Start 41: test_core_respa_003_serial
41/54 Test #41: test_core_respa_003_serial ............   Passed    0.03 sec
      Start 42: test_core_respa_004_serial
42/54 Test #42: test_core_respa_004_serial ............   Passed    0.03 sec
      Start 43: test_core_respa_005_serial
43/54 Test #43: test_core_respa_005_serial ............   Passed    0.03 sec
      Start 44: test_core_respa_006_serial
44/54 Test #44: test_core_respa_006_serial ............   Passed    0.03 sec
      Start 45: test_core_respa_007_serial
45/54 Test #45: test_core_respa_007_serial ............   Passed    0.03 sec
      Start 46: test_core_respa_008_serial
46/54 Test #46: test_core_respa_008_serial ............   Passed    0.03 sec
      Start 47: test_core_respa_100_serial
47/54 Test #47: test_core_respa_100_serial ............   Passed   13.48 sec
      Start 48: test_core_respa_101_serial
48/54 Test #48: test_core_respa_101_serial ............   Passed   13.42 sec
      Start 49: test_core_respa_102_serial
49/54 Test #49: test_core_respa_102_serial ............   Passed   13.52 sec
      Start 50: test_core_respa_103_serial
50/54 Test #50: test_core_respa_103_serial ............   Passed   10.73 sec
      Start 51: test_core_respa_200_serial
51/54 Test #51: test_core_respa_200_serial ............   Passed    0.52 sec
      Start 52: test_core_respa_201_serial
52/54 Test #52: test_core_respa_201_serial ............   Passed    0.58 sec
      Start 53: test_core_respa_202_serial
53/54 Test #53: test_core_respa_202_serial ............   Passed    0.66 sec
      Start 54: ShowHelp
54/54 Test #54: ShowHelp ..............................   Passed    0.04 sec
100% tests passed, 0 tests failed out of 54
Total Test time (real) = 123.64 sec
make: Leaving directory `/builddir/build/BUILD/lammps-stable_5Jun2019/openmpi'
+ test -n openmpi
+ module unload mpi/openmpi-aarch64
BUILDSTDERR: ++ /usr/bin/modulecmd sh unload mpi/openmpi-aarch64
+ eval MANPATH=/usr/share/man:/usr/local/share/man ';export' 'MANPATH;PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin' ';export' 'PATH;unset' 'LD_LIBRARY_PATH;unset' 'LOADEDMODULES;unset' 'MPI_BIN;unset' 'MPI_COMPILER;unset' 'MPI_FORTRAN_MOD_DIR;unset' 'MPI_HOME;unset' 'MPI_INCLUDE;unset' 'MPI_LIB;unset' 'MPI_MAN;unset' 'MPI_PYTHON_SITEARCH;unset' 'MPI_SUFFIX;unset' 'MPI_SYSCONFIG;unset' 'PYTHONPATH;unset' '_LMFILES_;'
BUILDSTDERR: ++ MANPATH=/usr/share/man:/usr/local/share/man
BUILDSTDERR: ++ export MANPATH
BUILDSTDERR: ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
BUILDSTDERR: ++ export PATH
BUILDSTDERR: ++ unset LD_LIBRARY_PATH
BUILDSTDERR: ++ unset LOADEDMODULES
BUILDSTDERR: ++ unset MPI_BIN
BUILDSTDERR: ++ unset MPI_COMPILER
BUILDSTDERR: ++ unset MPI_FORTRAN_MOD_DIR
BUILDSTDERR: ++ unset MPI_HOME
BUILDSTDERR: ++ unset MPI_INCLUDE
BUILDSTDERR: ++ unset MPI_LIB
BUILDSTDERR: ++ unset MPI_MAN
BUILDSTDERR: ++ unset MPI_PYTHON_SITEARCH
BUILDSTDERR: ++ unset MPI_SUFFIX
BUILDSTDERR: ++ unset MPI_SYSCONFIG
BUILDSTDERR: ++ unset PYTHONPATH
BUILDSTDERR: ++ unset _LMFILES_
Processing files: lammps-20190605-3.el7.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GuR3dj
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ DOCDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/doc/lammps-20190605
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/doc/lammps-20190605
+ cp -pr README /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/doc/lammps-20190605
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MbWWef
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ LICENSEDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-20190605
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-20190605
+ cp -pr LICENSE /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-20190605
+ exit 0
Provides: lammps = 20190605-3.el7 lammps(aarch-64) = 20190605-3.el7 liblammps.so.0()(64bit)
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libOpenCL.so.1(OPENCL_2.0)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libdl.so.2()(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libhdf5.so.8()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) libkim-api.so.2()(64bit) liblammps.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenblas.so.0()(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsz.so.2()(64bit) libvoro++.so.0()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: lammps-openmpi-20190605-3.el7.aarch64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XTChGg
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ LICENSEDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-openmpi-20190605
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-openmpi-20190605
+ cp -pr LICENSE /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-openmpi-20190605
+ exit 0
Provides: lammps-openmpi = 20190605-3.el7 lammps-openmpi(aarch-64) = 20190605-3.el7 liblammps_openmpi.so.0()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libOpenCL.so.1(OPENCL_2.0)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libdl.so.2()(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libhdf5.so.8()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) libkim-api.so.2()(64bit) liblammps_openmpi.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenblas.so.0()(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsz.so.2()(64bit) libvoro++.so.0()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: lammps-mpich-20190605-3.el7.aarch64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.sZuJhi
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ LICENSEDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-mpich-20190605
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-mpich-20190605
+ cp -pr LICENSE /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-mpich-20190605
+ exit 0
Provides: lammps-mpich = 20190605-3.el7 lammps-mpich(aarch-64) = 20190605-3.el7 liblammps_mpich.so.0()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libOpenCL.so.1()(64bit) libOpenCL.so.1(OPENCL_1.0)(64bit) libOpenCL.so.1(OPENCL_1.2)(64bit) libOpenCL.so.1(OPENCL_2.0)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libdl.so.2()(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libhdf5.so.8()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) libkim-api.so.2()(64bit) liblammps_mpich.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libopenblas.so.0()(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsz.so.2()(64bit) libvoro++.so.0()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: python36-lammps-20190605-3.el7.aarch64
Provides: python3-lammps = 20190605-3.el7 python3-lammps(aarch-64) = 20190605-3.el7 python36-lammps = 20190605-3.el7 python36-lammps(aarch-64) = 20190605-3.el7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.6
Processing files: lammps-headers-20190605-3.el7.aarch64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MLhIHv
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ LICENSEDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-headers-20190605
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-headers-20190605
+ cp -pr LICENSE /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-headers-20190605
+ exit 0
Provides: lammps-headers = 20190605-3.el7 lammps-headers(aarch-64) = 20190605-3.el7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: lammps-devel-20190605-3.el7.aarch64
Provides: lammps-devel = 20190605-3.el7 lammps-devel(aarch-64) = 20190605-3.el7 pkgconfig(liblammps) = 20190605
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/pkg-config liblammps.so.0()(64bit)
Processing files: lammps-mpich-devel-20190605-3.el7.aarch64
Provides: lammps-mpich-devel = 20190605-3.el7 lammps-mpich-devel(aarch-64) = 20190605-3.el7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: liblammps_mpich.so.0()(64bit)
Processing files: lammps-openmpi-devel-20190605-3.el7.aarch64
Provides: lammps-openmpi-devel = 20190605-3.el7 lammps-openmpi-devel(aarch-64) = 20190605-3.el7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: liblammps_openmpi.so.0()(64bit)
Processing files: lammps-data-20190605-3.el7.noarch
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wxLMfQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ LICENSEDIR=/builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-data-20190605
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-data-20190605
+ cp -pr LICENSE /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64/usr/share/licenses/lammps-data-20190605
+ exit 0
Provides: config(lammps-data) = 20190605-3.el7 lammps-data = 20190605-3.el7
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: lammps-debuginfo-20190605-3.el7.aarch64
Provides: lammps-debuginfo = 20190605-3.el7 lammps-debuginfo(aarch-64) = 20190605-3.el7
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64
Wrote: /builddir/build/RPMS/lammps-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-openmpi-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-mpich-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/python36-lammps-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-headers-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-devel-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-mpich-devel-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-openmpi-devel-20190605-3.el7.aarch64.rpm
Wrote: /builddir/build/RPMS/lammps-data-20190605-3.el7.noarch.rpm
Wrote: /builddir/build/RPMS/lammps-debuginfo-20190605-3.el7.aarch64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.VijXOc
+ umask 022
+ cd /builddir/build/BUILD
+ cd lammps-stable_5Jun2019
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/lammps-20190605-3.el7.aarch64
+ exit 0
Child return code was: 0